BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39415.1 Length=360 Score E Sequences producing significant alignments: (Bits) Value Ahg934699 jgi|Araly1|934699|scaffold_402687.1 494 2e-139 Ahg333309 jgi|Araly1|333309|fgenesh1_pm.C_scaffold_380000002 302 1e-81 > Ahg934699 jgi|Araly1|934699|scaffold_402687.1 Length=1435 Score = 494 bits (267), Expect = 2e-139 Identities = 319/344 (93%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 9 GGCAGACGACGGCGGAAACGGAGACGGTGCCACCGCCGGTGACTGCTACGCTCATCATCA 68 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 25 GGCAGACGACGGTGGAAACGGAGACGGCGCCACCGCCGGTGACTGCTACGCTCATCATCA 84 Query 69 CT-ACAGAGATGTCAAACTAGCAAGAGATGCAAGTGAAAATATAGACTCAATCAGCTCGC 127 | | ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| | Sbjct 85 -TCGCCGAGATATCAAACTAGCAGGAGATTCAAGTGAAAATTTAGACTCAATCAGCTCTC 143 Query 128 TTCCTGATGTGATCCTCCAACAAATCCTCTCCTCTCTTCCGACCAATTTAGCTATCAGAA 187 | ||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||| Sbjct 144 TGCCTGATGTGATCCTCCAACAAATCCTCTCCTATCTTCCGACCAAATTATCCATCAGAA 203 Query 188 CTTCAGTCTTGTCCACACGATGGAGGCATGTATGGT-CTGACACACCTTACATATACTTT 246 ||||||||||||||||| |||||||||||||||||| | || ||||||| | | |||||| Sbjct 204 CTTCAGTCTTGTCCACAAGATGGAGGCATGTATGGTAC-GATACACCTTCCCTCTACTTT 262 Query 247 GATGGACCAGGAACTTTGTATAGGGGACTGAAGGCTGATACGATAAACAAAACCCTAGCT 306 ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 263 GATGGACCAGGAACTTTTTATAGGGGACTGAAGGCTGATACGTTAAACAAAACCCTAGCT 322 Query 307 CGATACAAGCTTCCCAAGATTATGAGTTTTCACCTCTATACCAA 350 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 CGATACAAGCTTCCCAAGATTATGAGTTTTCACCTCTATACCAA 366 > Ahg333309 jgi|Araly1|333309|fgenesh1_pm.C_scaffold_380000002 Length=1275 Score = 302 bits (163), Expect = 1e-81 Identities = 197/214 (92%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 9 GGCAGACGACGGCGGAAACGGAGACGGTGCCACCGCCGGTGACTGCTACGCTCATCATCA 68 |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 3 GGCAGACGACGGTGGAAACGGAGACGGCGCCACCTCCGGTGACTGCTACGCTCATCATCA 62 Query 69 CTACAGAGATGTCAAACTAGCAAGAGATGCAAGTGAAAATATAGACTCAATCAGCTCGCT 128 | | ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| || Sbjct 63 CCGCCGAGATATCAAACTAGCAGGAGATTCAAGTGAAAATTTAGACTCAATCAGCTCTCT 122 Query 129 TCCTGATGTGATCCTCCAACAAATCCTCTCCTCTCTTCCGACCAATTTAGCTATCAGAAC 188 ||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||| Sbjct 123 GCCTGATGTGATCCTCCAACAAATCCTCTCCTATCTTCCGACCAAATTATCCATCAGAAC 182 Query 189 TTCAGTCTTGTCCACACGATGGAGGCATGTATGG 222 |||||||||||||||| ||||||||||||||||| Sbjct 183 TTCAGTCTTGTCCACAAGATGGAGGCATGTATGG 216 Score = 150 bits (81), Expect = 6e-36 Identities = 86/88 (98%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 263 TGTATAGGGGACTGAAGGCTGATACGATAAACAAAACCCTAGCTCGATACAAGCTTCCCA 322 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 210 TGTAT-GGGGACTGAAGGCTGATACGTTAAACAAAACCCTAGCTCGATACAAGCTTCCCA 268 Query 323 AGATTATGAGTTTTCACCTCTATACCAA 350 |||||||||||||||||||||||||||| Sbjct 269 AGATTATGAGTTTTCACCTCTATACCAA 296 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12820277904 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5