BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39415.1
Length=360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934699 jgi|Araly1|934699|scaffold_402687.1 494 2e-139
Ahg333309 jgi|Araly1|333309|fgenesh1_pm.C_scaffold_380000002 302 1e-81
> Ahg934699 jgi|Araly1|934699|scaffold_402687.1
Length=1435
Score = 494 bits (267), Expect = 2e-139
Identities = 319/344 (93%), Gaps = 4/344 (1%)
Strand=Plus/Plus
Query 9 GGCAGACGACGGCGGAAACGGAGACGGTGCCACCGCCGGTGACTGCTACGCTCATCATCA 68
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 25 GGCAGACGACGGTGGAAACGGAGACGGCGCCACCGCCGGTGACTGCTACGCTCATCATCA 84
Query 69 CT-ACAGAGATGTCAAACTAGCAAGAGATGCAAGTGAAAATATAGACTCAATCAGCTCGC 127
| | ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| |
Sbjct 85 -TCGCCGAGATATCAAACTAGCAGGAGATTCAAGTGAAAATTTAGACTCAATCAGCTCTC 143
Query 128 TTCCTGATGTGATCCTCCAACAAATCCTCTCCTCTCTTCCGACCAATTTAGCTATCAGAA 187
| ||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||
Sbjct 144 TGCCTGATGTGATCCTCCAACAAATCCTCTCCTATCTTCCGACCAAATTATCCATCAGAA 203
Query 188 CTTCAGTCTTGTCCACACGATGGAGGCATGTATGGT-CTGACACACCTTACATATACTTT 246
||||||||||||||||| |||||||||||||||||| | || ||||||| | | ||||||
Sbjct 204 CTTCAGTCTTGTCCACAAGATGGAGGCATGTATGGTAC-GATACACCTTCCCTCTACTTT 262
Query 247 GATGGACCAGGAACTTTGTATAGGGGACTGAAGGCTGATACGATAAACAAAACCCTAGCT 306
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 263 GATGGACCAGGAACTTTTTATAGGGGACTGAAGGCTGATACGTTAAACAAAACCCTAGCT 322
Query 307 CGATACAAGCTTCCCAAGATTATGAGTTTTCACCTCTATACCAA 350
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CGATACAAGCTTCCCAAGATTATGAGTTTTCACCTCTATACCAA 366
> Ahg333309 jgi|Araly1|333309|fgenesh1_pm.C_scaffold_380000002
Length=1275
Score = 302 bits (163), Expect = 1e-81
Identities = 197/214 (92%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 9 GGCAGACGACGGCGGAAACGGAGACGGTGCCACCGCCGGTGACTGCTACGCTCATCATCA 68
|||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 3 GGCAGACGACGGTGGAAACGGAGACGGCGCCACCTCCGGTGACTGCTACGCTCATCATCA 62
Query 69 CTACAGAGATGTCAAACTAGCAAGAGATGCAAGTGAAAATATAGACTCAATCAGCTCGCT 128
| | ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| ||
Sbjct 63 CCGCCGAGATATCAAACTAGCAGGAGATTCAAGTGAAAATTTAGACTCAATCAGCTCTCT 122
Query 129 TCCTGATGTGATCCTCCAACAAATCCTCTCCTCTCTTCCGACCAATTTAGCTATCAGAAC 188
||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||
Sbjct 123 GCCTGATGTGATCCTCCAACAAATCCTCTCCTATCTTCCGACCAAATTATCCATCAGAAC 182
Query 189 TTCAGTCTTGTCCACACGATGGAGGCATGTATGG 222
|||||||||||||||| |||||||||||||||||
Sbjct 183 TTCAGTCTTGTCCACAAGATGGAGGCATGTATGG 216
Score = 150 bits (81), Expect = 6e-36
Identities = 86/88 (98%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 263 TGTATAGGGGACTGAAGGCTGATACGATAAACAAAACCCTAGCTCGATACAAGCTTCCCA 322
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 210 TGTAT-GGGGACTGAAGGCTGATACGTTAAACAAAACCCTAGCTCGATACAAGCTTCCCA 268
Query 323 AGATTATGAGTTTTCACCTCTATACCAA 350
||||||||||||||||||||||||||||
Sbjct 269 AGATTATGAGTTTTCACCTCTATACCAA 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12820277904
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5