BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39420.1
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482961 jgi|Araly1|482961|fgenesh2_kg.4__2021__AT2G39420.1 1696 0.0
Ahg333308 jgi|Araly1|333308|fgenesh1_pm.C_scaffold_380000001 534 5e-151
> Ahg482961 jgi|Araly1|482961|fgenesh2_kg.4__2021__AT2G39420.1
Length=1168
Score = 1696 bits (918), Expect = 0.0
Identities = 1083/1160 (93%), Gaps = 22/1160 (2%)
Strand=Plus/Plus
Query 47 AGAGAGATTCAGACTCAAATCTC-TCAGTAGGAATGGCAAGTGAAACAGAGAACATCAAG 105
|||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 19 AGAGAGATTCAGAC-GAAATCTCTTC-GTAAGAATGGCAAGTGAAACAGAGAACATCAAG 76
Query 106 TATGAAGAGAGTTTCATCAAGAACACTCGAGGAATGAAACTGTTCACGTGCAAATGGGTA 165
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 77 TATGAAGAGAGTTTCATCAAGAACACTCGAGGAATGAAACTGTTCACGTGTAAATGGGTA 136
Query 166 CCAGCAAAGCAAGAGCCAAAGGCTTTAGTCTTTATTTGCCATGGATATGCAATGGAATGT 225
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 137 CCAGCAAATCAAGAGCCAAAGGCTTTAGTCTTCATTTGCCATGGTTATGCAATGGAATGT 196
Query 226 AGCATCACCATGAACAGTACTGCGAGGAGGCTGGTGAAAGCAGGATTTGCGGTATATGGA 285
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 197 AGCATCACCATGAACAGTACTGCAAGGAGGCTTGTGAAAGCAGGATTTGCGGTATATGGA 256
Query 286 ATTGATTACGAAGGGCATGGAAAATCTGATGGGCTTAGTGCTTATGTCCCAAACTTTGAC 345
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 ATTGATTACGAAGGACATGGAAAATCTGATGGGCTTAGTGCTTATGTCCCAAACTTTGAC 316
Query 346 CATCTCGTTGATGATGTCTCTACTCACTACACAAGCATTTGCGAGAAAGAAGAGAATAAA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CATCTCGTTGATGATGTCTCTACTCACTACACAAGCATTTGCGAGAAAGAAGAGAATAAA 376
Query 406 GGGAAGATGAGGTTCTTGTTAGGAGAATCAATGGGAGGAGCAGTGCTTTTGTTGTTACAC 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GGGAAGATGAGGTTCTTGTTAGGAGAATCAATGGGAGGAGCAGTGCTTTTGTTGTTACAC 436
Query 466 AGAAAGAAGCCTCAGTTTTGGGATGGGGCTGTCTTGGTTGCTCCAATGTGTAAGATTGCT 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 AGAAAGAAGCCTCAGTTTTGGGATGGGGCTGTCTTGGTTGCTCCAATGTGTAAGATTGCT 496
Query 526 GAAGAAATGAAACCAAGCCCTTTGGTAATTTCGATATTGGCCAAACTTAGTGGAGTGATA 585
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 497 GAAGAAATGAAACCAAGCCCTTTGGTAATTTCGATATTGTCCAAACTTAGCGGAGTGATA 556
Query 586 CCTTCGTGGAAAATCATCCCTGGCCAAGATATCATTGAGACTGCTTTTAAGCAGCCAGAA 645
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 CCTACGTGGAGAATCATCCCTGGCCAAGATATCATTGAGACTGCTTTTAAGCAGCCAGAA 616
Query 646 ATCAGGAAACAGGTTAGGGAAAATCCCTACTGCTACAAGGGACGTCCACGTTTGAAGACT 705
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 617 ATCAGGAAACAGGTTAGGGAAAATCCTTACTGCTACAAGGGACGTCCACGTTTGAAGACT 676
Query 706 GCTTATGAGCTTTTGAGGGTTAGCACCGATCTCGAGAAGAGGCTTAATGAGGTTTCATTA 765
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 677 GCCTATGAGCTATTGAGGGTTAGCACCGATCTCGAGAAGAGACTTAATGAGGTTTCATTA 736
Query 766 CCGTTCATAG-TTTTGCACGGTGAAGACGATAAAGTCACAGATAAAGCGGTGAGTCGACA 824
|||||||| | |||||||||| ||||||||||||||||| || ||||| ||||| |||||
Sbjct 737 CCGTTCAT-GCTTTTGCACGGAGAAGACGATAAAGTCACCGACAAAGCAGTGAGCCGACA 795
Query 825 ACTGTATGAAGTTGC-ATCTAGTTCGGACAAGACTTTCAAGTTGTACCCTGGGATGTGGC 883
|| ||||| ||||| | | ||| | ||||||||||||||||||||||||||||||||||
Sbjct 796 GCTCTATGAGGTTGCGA-CGAGTGCAGACAAGACTTTCAAGTTGTACCCTGGGATGTGGC 854
Query 884 ATGGTTTACTCTATGGAGAGACACCAGAGAATATCGAGACTGTTTTTGCTGACATCATTG 943
||||||||||||| || |||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 855 ATGGTTTACTCTACGGCGAGACACCAGAGAACATCGAGATTGTTTTTGCTGACATTATTG 914
Query 944 GCTGGTTGGATAAGAAAGTTGCTGATGAA-AGTGGAGGCTTTGAATCCGAGCTTAAACGT 1002
| |||||||| ||||||||| |||||| | | ||||||||||||||||||||||||||||
Sbjct 915 GTTGGTTGGACAAGAAAGTTTCTGATGGACA-TGGAGGCTTTGAATCCGAGCTTAAACGT 973
Query 1003 AAAAATGATGGTAT-TCCTTTGAAAGGGTAGTTATCACTTTAACATAAACAAATAAAGGA 1061
||||||||||| || || ||||||||||||||||||| | ||| ||||||||| ||| |
Sbjct 974 AAAAATGATGGCATCTC-TTTGAAAGGGTAGTTATCAATCTAA--TAAACAAATTAAGCA 1030
Query 1062 TAGTTAAAATCTGTTTGTCTGTTTGTTTTTCTCTCTTTTCCTGAATTCTGTTTATGTTAA 1121
|||||||| | ||||||| ||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1031 TAGTTAAATTGTGTTTGTTTGTTTGTTTTTCTCT-TTT-CCTGAATTCTGTTTATGTTAA 1088
Query 1122 TTAGTTGTTACCATGTTTGTCACTC-TCTGACTTAGTGTAA-TACTATTTAATAATTTAT 1179
||||| | || ||||||||||| | | ||||||| |||| | |||| |||||||||||
Sbjct 1089 GTAGTT-T-ACAATGTTTGTCACCCAT-TGACTTACCGTAAAT-CTATATAATAATTTAT 1144
Query 1180 GGATTTGATTTCACAAGAAA 1199
||| ||||| | ||||||
Sbjct 1145 GGAAAAGATTTGA-AAGAAA 1163
> Ahg333308 jgi|Araly1|333308|fgenesh1_pm.C_scaffold_380000001
Length=345
Score = 534 bits (289), Expect = 5e-151
Identities = 303/310 (98%), Gaps = 0/310 (0%)
Strand=Plus/Plus
Query 79 ATGGCAAGTGAAACAGAGAACATCAAGTATGAAGAGAGTTTCATCAAGAACACTCGAGGA 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAAGTGAAACAGAGAACATCAAGTATGAAGAGAGTTTCATCAAGAACACTCGAGGA 60
Query 139 ATGAAACTGTTCACGTGCAAATGGGTACCAGCAAAGCAAGAGCCAAAGGCTTTAGTCTTT 198
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 ATGAAACTGTTCACGTGTAAATGGGTACCAGCAAATCAAGAGCCAAAGGCTTTAGTCTTC 120
Query 199 ATTTGCCATGGATATGCAATGGAATGTAGCATCACCATGAACAGTACTGCGAGGAGGCTG 258
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 ATTTGCCATGGTTATGCAATGGAATGTAGCATCACCATGAACAGTACTGCAAGGAGGCTT 180
Query 259 GTGAAAGCAGGATTTGCGGTATATGGAATTGATTACGAAGGGCATGGAAAATCTGATGGG 318
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GTGAAAGCAGGATTTGCGGTATATGGAATTGATTACGAAGGACATGGAAAATCTGATGGG 240
Query 319 CTTAGTGCTTATGTCCCAAACTTTGACCATCTCGTTGATGATGTCTCTACTCACTACACA 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTAGTGCTTATGTCCCAAACTTTGACCATCTCGTTGATGATGTCTCTACTCACTACACA 300
Query 379 AGCATTTGCG 388
||||||||||
Sbjct 301 AGCATTTGCG 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45595008732
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5