BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39430.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482962 jgi|Araly1|482962|fgenesh2_kg.4__2022__AT2G39430.1 1823 0.0
Ahg485944 jgi|Araly1|485944|fgenesh2_kg.5__1936__AT3G55230.1 490 1e-137
> Ahg482962 jgi|Araly1|482962|fgenesh2_kg.4__2022__AT2G39430.1
Length=1158
Score = 1823 bits (987), Expect = 0.0
Identities = 1102/1159 (95%), Gaps = 1/1159 (0%)
Strand=Plus/Plus
Query 23 AAACATCAAACACAAACCAAAGACAACTTGAGTAACCAAACCAAAGACTAAAAATGGCCA 82
||||||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 1 AAACATCGAACACAAACCAAAGACAACTTGAGTAACCAAACGTAATACT-AAAATGGCCA 59
Query 83 AAGCTCTTCACATAACCATCTTTCTCTTCCTCATATCCTCCAATCTCCTCGCATTTATCA 142
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 60 AAGCTCTTCACATTACCATCTTTCTTTTCCTCATATCCTCCAATCTCCTCGCATTTATCA 119
Query 143 ACTCCGCCAGACTTCTTGACGAGATCCAACCTCAGCCTCAGTTAGTCCCTACCGGCCAAA 202
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 120 ACTCCGCTAGACTTCTTGACGAGATCCAACCTCAGCCTCAGTTGGTCCCTACTGGCCAAA 179
Query 203 TCCCCACTGTGGCTCCAACCGAAGCTGAGGAGGAGGATGGAACCGATGACAACCCAGGAC 262
|||||| |||||||||||||||||| |||||||| |||||||||||||||||| ||||||
Sbjct 180 TCCCCATTGTGGCTCCAACCGAAGCCGAGGAGGATGATGGAACCGATGACAACACAGGAC 239
Query 263 TAGCAACCACAACCACAACTGCATCAGCAGTTACAGTCCCAGCCGGTCCAGCAGAGGCTA 322
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 240 CCGCAACCACAACCACAACTGCATCAGCAATTACAGTCCCAGCCGGTCCAGCAGGGGCTA 299
Query 323 CAGAGCCATTACTAGAGTTCTTTATGCATGACGTGCTAGGCGGATCTCACCCATCAGCTC 382
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 300 CAGAGCCTTTACTAGAGTTCTTTATGCACGACGTGCTAGGCGGGTCTCACCCATCGGCTC 359
Query 383 GTGTGGTTACAGGTATAGTAGCTCAAACTGAAGTGAACGGAATACCATTCTCAAAGGCCA 442
|||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 360 GTGTGGTTACCGGTATAGTAGCTCAAACCGAGGTGAACGGAATACCATTCTCAAAGGCCA 419
Query 443 GTAACAGCATTTTCCCGGTTGACAATGGAGTCCCACTGGTCAACTCAAACAACATCAACA 502
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 GCAACAGCATTTTCCCGGTTGACAATGGAGTCCCACTGGTTAACTCAAACAACATCAACA 479
Query 503 GTGTCATTAACCCAAACACAGCTCCACTTCTCACCGGACTTGGCGGTGCTCAAACCTCCA 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTGTCATTAACCCAAACACAGCTCCACTTCTCACCGGACTTGGCGGTGCTCAAACCTCCA 539
Query 563 CCGTCATCCAAAACACTAACGGAAATTCCAACGATGCCCTTAGCGCCAACAGTCTCCCTT 622
|||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 540 CCGTAATCCAAAACACTAACGGCAATTCCAACGATGCCCTTAGCGCCAACAATCTCCCTT 599
Query 623 TTGTAACTGCCGGGAACCTTCCTCCCGGTGCTGCCCTCCAGCATCTCATGTTCGGAACCA 682
||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGTAACCGCCGGAAACCTCCCTCCCGGTGCTGCCCTCCAGCATCTCATGTTCGGAACCA 659
Query 683 TAACCGTTGTAGATGATGAGCTAACCGAAAGCCACGAGCTTGGCTCAGCCGTTATAGGGA 742
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 TAACCGTTGTAGATGATGAGCTAACCGAAAGCCACGAGCTCGGCTCAGCCGTTATAGGGA 719
Query 743 GAGCTCAAGGCTTTTACTTGGCCAGTTCCCTGGACGGAACAAGTCAGACTCTTTCTCTGA 802
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 720 GAGCTCAAGGCTTTTACTTGGCCAGTTCCTTGGACGGAACAAGTCAAACTCTTTCTCTGA 779
Query 803 CTGTATTGCTACATGGTGAGCATGACCAGCATGACACTTTAGACGATGCCATTAGTTTCT 862
| ||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 780 CAGTATTGCTACACGGAGAGCATGACCATCAAGACACTTTAGACGATGCCATTAGTTTCT 839
Query 863 TTGGGGTTCACAGAACCGCCTCTCATGCCTCCCAGATCGCGGTTATAGGCGGGACCGGGA 922
||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 840 TTGGGGTTCACCGGACCGCCTCTCATGCCTCCCAGATTGCGGTTATAGGCGGGACCGGGA 899
Query 923 AGTTTGAACACGCCAAAGGGTATGCCATAGTGGAAACTCTGCATAACCAGGACAACCAGC 982
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 AGTTTGAGCACGCCAAAGGGTATGCCATAGTTGAAACTCTGCATAACCAGGACAACCAGC 959
Query 983 ATATCACTGATGGTCAAGACACCATCCTCCATTTCAGTGTATACCTTACCTACAAAGCTT 1042
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 960 ATATCACTGATGGTCAAGATACCATCCTCCATTTCAGTGTATACCTCACCTACAAAGCTT 1019
Query 1043 GAAGAGAAAATGAGTGTTAAAACAAGAAATGATTGCTTTTTTATATGTTCTTGCTCACTA 1102
|| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1020 GAGGAGAAAATGAGACTTAAAACAAGAAATGATTGCTTTTGTATATGTTCTTGCTCACTA 1079
Query 1103 GCTTCCGCTTGGGGCCTTTTTCCTTTGTTGCGCAAATTTGATTTCTAAAGAAATTTATTT 1162
|| |||||||||| |||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 1080 GCCTCCGCTTGGGCCCTTTTTCCTTTGTTGTGCAAATCTGATATCTAAAGAAATTTATTT 1139
Query 1163 AAATGAGACTGTTTCAATC 1181
|||||||||||||||||||
Sbjct 1140 AAATGAGACTGTTTCAATC 1158
> Ahg485944 jgi|Araly1|485944|fgenesh2_kg.5__1936__AT3G55230.1
Length=1088
Score = 490 bits (265), Expect = 1e-137
Identities = 586/740 (79%), Gaps = 26/740 (4%)
Strand=Plus/Plus
Query 324 AGAGCCATTACTAGAGTTCTTTATGCATGACGTGCTAGGCGGATCTCACCCATCAGCTCG 383
||||||| | |||||||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 229 AGAGCCAATCCTAGAGTTCTTTATGCATGACGTGCTAGGCGGGTCACACCCGTCAGCACG 288
Query 384 TGTGGTTACAGGTATAGTAGCTCAAACTGAAGTGAACGGAATACCATTCTC-AAAGGCCA 442
|||||||||||| |||||||| ||||| || |||||||| ||||| || || ||| |||
Sbjct 289 TGTGGTTACAGGGATAGTAGCACAAACAGAGGTGAACGGGATACCGTTTTCTAAAT-CCA 347
Query 443 GTAACAGCATTTTCCCGGTTGACAATGGAGTCCCACTGGTCAACTCAAACAACATCAACA 502
| |||| ||||||||| || || || | ||| || || || ||| |||||| ||||||||
Sbjct 348 GCAACAACATTTTCCCCGTAGATAACGCAGTGCCGCTTGTGAACGCAAACAGCATCAACA 407
Query 503 GTGTCATTAACCCAAACACAGCTCCACTTCTCACCGGACTTGGCGG-TGCTCAAACCTCC 561
| | || |||||||||||||||||||| ||||| |||||| | || | ||||| || |
Sbjct 408 ATTTAATCAACCCAAACACAGCTCCACTCCTCACTGGACTTAGTGGCT-CTCAAGCCAAC 466
Query 562 ACCGTCATCCAAAACACTAACGGAAATTCC-AACGATGCCCTTAGCGCCAACAGTCT-CC 619
|||||||| ||||||| |||||| || ||| || ||| |||||||| |||||| || ||
Sbjct 467 ACCGTCATTCAAAACAGTAACGGTAACTCCCAAGGAT-CCCTTAGCTCCAACAACCTTCC 525
Query 620 CTTTTGTAACTGCCGGGA-ACCTTCCTCCCGGT-GCTGCCCTCCAGCATCTCATGTTCGG 677
|||| ||||| | ||| | || ||||| | ||||||||||| || |||||||| ||
Sbjct 526 CTTT-GTAACCAC-GGGTCAGCTCCCTCCTA-TAGCTGCCCTCCAACAGCTCATGTTTGG 582
Query 678 AACCATAACCGTTGTAGATGATGAGCTAACCGAAAGCCACGAGCTTGG-CTCAGCCGTTA 736
| || || || || || |||||||| || ||| |||| ||| |||| ||| || | |
Sbjct 583 CTCTATCACAGTGGTTGACGATGAGCTCACTGAAGGCCATGAG-TTGGGCTCTGCAATCA 641
Query 737 TAGGGAGAGCTCAAGGCTTTTACTTGGCCAGTTCCCTGGACGGAACAAGTCAGACTCTTT 796
| || ||||| ||||| |||||| | || || || |||||||||| || ||||| ||||
Sbjct 642 TTGGCAGAGCCCAAGGGTTTTACCTCGCTAGCTCTTTGGACGGAACTAGCCAGACCCTTT 701
Query 797 CTCTGA-CTGTATTGCTACATGGTGAGCATGACCAGCATGACACT-TTAGACGATGCCAT 854
| || | | || ||||| || | |||||||| || |||||||| || || ||||| ||
Sbjct 702 C-CTTAACCGTGTTGCTCCACGAAGAGCATGATCACCATGACACCCTT-GATGATGCGAT 759
Query 855 TAGTTTCTTTGGGGTTCACAGAACCGCCTCTCATGCCTCCCAGATCGCGGTTATAGGCGG 914
|| ||||| ||||||||| ||||||| ||||||||||| || ||||| ||| | || ||
Sbjct 760 CAGCTTCTTCGGGGTTCACCGAACCGCTTCTCATGCCTCGCATATCGCTGTTGTGGGTGG 819
Query 915 GACCGGGAAGTTT-GAACACGCCAAAGGGTATGCCATAGTGGAAACTCTGCATAACCAGG 973
||| || | | || || || || ||||||||||| | ||||| ||||| || |||||||
Sbjct 820 GACTGGCA-GATTCGAGCATGCTAAAGGGTATGCTGTCGTGGAGACTCTACACAACCAGG 878
Query 974 ACA-ACCAGCATATCACTGATGGTCAA-GACACCATCCTCCATTTCAGTGTATACCTTAC 1031
| | |||| ||| | |||||||||| | || ||||| |||||||||||||| || |||||
Sbjct 879 A-AGACCAACATGTTACTGATGGTCCATGATACCATTCTCCATTTCAGTGTTTATCTTAC 937
Query 1032 CTAC-A-AA-GCTTGAAGAG 1048
|||| | || ||||||||||
Sbjct 938 CTACTACAAAGCTTGAAGAG 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5