BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39435.1
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321630 jgi|Araly1|321630|fgenesh1_pm.C_scaffold_4001687 1836 0.0
> Ahg321630 jgi|Araly1|321630|fgenesh1_pm.C_scaffold_4001687
Length=2160
Score = 1836 bits (994), Expect = 0.0
Identities = 1344/1500 (90%), Gaps = 76/1500 (5%)
Strand=Plus/Plus
Query 86 ATCTTTTGA-TGATAAAGATTACTTCATTTCTGGTTATTCTCGAAGAGTAGAGGTCTCAA 144
||||||| | |||||||||||||||| |||| |||||| | | || |||||||
Sbjct 696 ATCTTTT-AGTGATAAAGATTACTTCGTTTC----TATTCT-G--G-GT----GTCTCAA 742
Query 145 AAGAAATGGAGTCTAAGGAAATTAGATCCTCCTCTGTCTTTGAGAGATCGATGCGTTTTA 204
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 743 AAGAAATGGAGTCTAAGGAAATTAGATCCTCCTCCGTGATTGAGAGATCGATGCGTTTTA 802
Query 205 ATGGAC----T----CT-T---TCAAGATAAGCTGAGAGTTGTTGAGAAACAGAATCAAC 252
|||||| | || | |||||||||||||||||||||| |||||||| |||
Sbjct 803 ATGGACTATTTCAGCCTCTGCATCAAGATAAGCTGAGAGTTGTTAAGAAACAG----AAC 858
Query 253 CACCAAAACGGTTTAACCAAAAGGAGTCTAATTCTGGTTTCACAGTGATTCCAACGAAGC 312
|| | ||| | |||||||||||| | ||||||||||||||||||||||||| ||
Sbjct 859 CAAC-AAA-----T--CCAAAAGGAGTCCATTTCTGGTTTCACAGTGATTCCAACGCAGG 910
Query 313 AACTTTGTCGAGTTTATCTCCAGAAACCGAATTTGTTGGCTTCCAAGGGTATAATTGATG 372
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 911 AACTTTGTCGAGTTTATCTCCGGAAACCCAATTTGTTGGCTTCCAAGGGTATAATTGATG 970
Query 373 CACTAGCTAAGCCTCCTCATAGGATTTTTGGTAGGAGATATGATCAGCAAAACTTCAAGT 432
|||||||||||||||||||||||| || ||||||||| || |||| |||||||| ||||
Sbjct 971 CACTAGCTAAGCCTCCTCATAGGAATTATGGTAGGAG--AT-ATCATCAAAACTTGAAGT 1027
Query 433 CAAAGCTGAGACATCTTCACACAACAAGTATTGATCCTCTGAAACACAAATT-TGGCAAG 491
||||| ||||||||| ||||||||||||| ||||| |||||||||||||||| || |||
Sbjct 1028 CAAAGTTGAGACATCATCACACAACAAGTGTTGATACTCTGAAACACAAATTCCGG-AAG 1086
Query 492 GAAGAGAATTCTCTGAGATATTTCACTCCTCTTGGTTTCAGTAGTGGTTCTCGTTTAGGA 551
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1087 AAAGAGAATTCTCTGAGATATTTCACTCCTCTTGGTTTCGGTAGTGGTTCTTGTTTAGGA 1146
Query 552 GATAGGAAGAAAGGGAAAGACCTTTCCTTTCAGGAGGAGAAACCAAAGGAAATGAAGAAA 611
||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1147 GATAGGAAGAAAGTGAAAGACCTTT-CTTT--TGAGGAGAAACCAAAGGAAATGAAGAAA 1203
Query 612 C--TTTG-T-G------A-----TCAGAAGAAGGAGAGAGTTGTGAGAGAAGTTAAATCC 656
| |||| | | | |||||||||||| ||||||||||||||||||||||||
Sbjct 1204 CTTTTTGATGGTACTACATTTGGTCAGAAGAAGGATAGAGTTGTGAGAGAAGTTAAATCC 1263
Query 657 AGTTTGGTGGTTAGTACTTCTAGGGACAGAGTTGCAGCAGATGTGAAGTTCAGGGATTTA 716
|||||| |||||||||| |||||||||| |||||| |||||||||||||||| |||||||
Sbjct 1264 AGTTTGATGGTTAGTACATCTAGGGACAAAGTTGCTGCAGATGTGAAGTTCAAGGATTTA 1323
Query 717 TCTTCTTCTGGTTTCATTTCCAAGGATATAAATGCTGAGTCAGTAGATTGCTCCCATGGA 776
|||||||| ||||||||| |||||||| ||||| ||||||| ||||||||||| ||| |
Sbjct 1324 TCTTCTTCAGGTTTCATTAGCAAGGATAAAAATGATGAGTCATTAGATTGCTCCAATGCA 1383
Query 777 TCTCCGGAATGTCAGACGAATTCGGAAGATGCTCATCAACCTAGTCCTGTTTCTGTTCTG 836
|||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1384 TCTCTGGAATGTCAGACGAACTCGGAAGAAGCTCATCAACCTAGTCCTGTTTCTGTTCTG 1443
Query 837 GAGCCAATGTTTTATGAAGATAACTTAGACGATAGTGAAGATATTTTAGACGACAGTGAA 896
|||||||||||||| ||||||| ||||||||| ||||||||||| ||||| ||||| |||
Sbjct 1444 GAGCCAATGTTTTACGAAGATATCTTAGACGACAGTGAAGATATCTTAGATGACAGCGAA 1503
Query 897 GATCTTCCTTATCCCAATTTTCTAAGTCTAGAGAATCAGCTGGAAACCCTGAAATCTGAA 956
||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1504 GATCTTCCTTATCCCGATTTTCAAAGTCTAGAGAAACAGCTGGAAACCCTGAAATCTGAA 1563
Query 957 TCTGAGAGTTATTCAGATGGGAGTGGGATGGAAGTATCAAGCGATGAGGAGTCTGCACTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1564 TCTGAGAGTTATTCAGATGGGAGTGGGATGGAAGTATCAAGCGATGAGGAGTCCGTTCTT 1623
Query 1017 GATTCTGCAATCAAAGAAAGCAAGGAAAGTGA-ACCAATTGGGTTCTTGGATACCCAAGA 1075
||||||| || ||||||||||||||| | | | |||||| ||||||||||||||||||||
Sbjct 1624 GATTCTGAAACCAAAGAAAGCAAGGACATT-ACACCAATCGGGTTCTTGGATACCCAAGA 1682
Query 1076 AAGCAGGGATTCTTCTTACATTGATGATATCTTGGCTGAAGTTTTACTTGGGGACAAGAA 1135
|||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 1683 AAGCAGGGATTCTTCTTACATTGATGATATATCGGCTGAAGTTGTACTTGGGGACAAGAA 1742
Query 1136 TTGCGTTCCTGGCAAACG-G-------G-ATTTAGTCATCACCCCCAAGATCTTCGAGAA 1186
||| |||||||||||||| | | |||||||||||| |||||||||||| |||||
Sbjct 1743 TTGGGTTCCTGGCAAACGTGATTCACTGGATTTAGTCATCATCCCCAAGATCTTTGAGAA 1802
Query 1187 ACTGGAGAAGAAGTATTACACAGAGACATCTTGGAAAAGATCTGACAGAAAGATTTTGTT 1246
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1803 ACTGGAGAAGAAGTATTACGCAGAGACATCTTGGAAAAGATCTGAAAGAAAGATTTTGTT 1862
Query 1247 TGACAGAGTCAATTCAAGTCTTGTAGAGATTCTAGAATCCTTTTCAGCTACACCAACATG 1306
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1863 TGACAGAGTCAATTCAGGTCTTGTAGAGATTCTAGAATCCTTTTCAGCTACACCAACATG 1922
Query 1307 GAAGAAACCCGTTTCTAGGAGGCTAGGCACTGCGCTAAGCACATGTGGACTGAAACAAGA 1366
|||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1923 GAAGAAACCCGTTTCTAGAAGGCTTGGCACCACGCTAAGCACATGTGGACTGAAACAAGA 1982
Query 1367 ACTCTGGAAAGTACTTTCTAGGCAAGAGAAGCGATCCAAGAAAA-AATCATTGGCCAAAG 1425
|||||||||||||||| | ||||||||||||||| | || |||| |||||||||| ||||
Sbjct 1983 ACTCTGGAAAGTACTTGCCAGGCAAGAGAAGCGAGCAAA-AAAAGAATCATTGGCTAAAG 2041
Query 1426 TGCCAGTCATAGACATTGATGAGTGGTTAGAACTCGAAGCTGATGATGAGTCAGTGGTTT 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2042 TGCCAGTCATAGACATTGATGAGTGGTTAGAACTCGAAGCTGATGATGAGTCAGTGGTTT 2101
Query 1486 GTGAATTAGAAAG-TATGATAGTGGATGAGTTGTTGTCTGAGGTTGTCAGCTTCATGTAG 1544
||||||||||||| | ||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2102 GTGAATTAGAAAGCT-TGATAGTAGATGAGTTGTTGGCTGAGGTTGTCAGCTTCATGTAG 2160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61172933470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5