BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39460.1
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952212 jgi|Araly1|952212|scaffold_46300002.1 909 0.0
Ahg321633 jgi|Araly1|321633|fgenesh1_pm.C_scaffold_4001690 765 0.0
> Ahg952212 jgi|Araly1|952212|scaffold_46300002.1
Length=565
Score = 909 bits (492), Expect = 0.0
Identities = 544/568 (96%), Gaps = 8/568 (1%)
Strand=Plus/Plus
Query 99 TTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGATACTACCAAGAA 158
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCGAGTCTGAAGAATCATTTCGAGCCATGTCTCCGGCTAAAGTTGATACTACCAAGAA 60
Query 159 GGCTGATCCTAAGGCCAAGGCCTTGAAGGCGGCAAAGGCTGTGAAGTCTGGTCAAG-CCT 217
||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 61 GGCTGATCCTAAGGCTAAGGCCTTGAAGGCGGCAAAGGCTGTGAAATCTGGTC-AGACCT 119
Query 218 TCAAGAAGAAGGACAAAAAGATTAGGACCAAGGTCACCTTCCACAGGCCAAAGACTCTTA 277
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTAAGAAGAAGGACAAGAAGATTAGGACCAAGGTCACCTTCCACAGGCCAAAGACTCTTA 179
Query 278 CCAAGCCTAGA-ACTGGTAAGTACCCAAAAATCAGCGCTACTCCAAGGAACAAGTTGGAT 336
||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 CCAAGCCCAGAGA-TGGTAAGTACCCAAGAATCAGCGCTACTCCAAGGAACAAGTTGGAT 238
Query 337 CACTACCAAATCCTTAAGTACCCACTCACCACTGAATCTGCGATGAAGAAGATTGAAGAC 396
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 239 CATTACCAAATCCTTAAGTACCCACTCACCACTGAATCTGCAATGAAGAAGATTGAAGAC 298
Query 397 AACAACACTCTTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCT 456
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 AACAACACTCTTGTTTTCATTGTTGACATTCGTGCTGACAAAAAGAAGATTAAGGATGCT 358
Query 457 GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGGCCTGATGGA 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGGCCTGATGGA 418
Query 517 ACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAG 576
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAA 478
Query 577 ATCGGCATCATCTAAGTCT---ATCTATCTCTGCAGTTATAAAGACTATTGTGGTTTTGT 633
|| |||||||||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 479 ATTGGCATCATCTAAGTCTCTTATCTATCTTTGCAGTTATAAAGACTCTTGTGGTTTTGT 538
Query 634 CTCTTGTAGTCTCAGTTTTGCTTTTAAG 661
|||||||||||||||||||||||| |||
Sbjct 539 CTCTTGTAGTCTCAGTTTTGCTTT-AAG 565
> Ahg321633 jgi|Araly1|321633|fgenesh1_pm.C_scaffold_4001690
Length=465
Score = 765 bits (414), Expect = 0.0
Identities = 450/467 (96%), Gaps = 4/467 (1%)
Strand=Plus/Plus
Query 127 ATGTCTCCGGCTAAAGTTGATACTACCAAGAAGGCTGATCCTAAGGCCAAGGCCTTGAAG 186
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1 ATGTCTCCGGCTAAAGTTGATACTACCAAGAAGGTTGATCCTAAGGCTAAGGCCTTGAAG 60
Query 187 GCGGCAAAGGCTGTGAAGTCTGGTCAAGCCTTCAAGAAGAAGGACAAAAAGATTAGGACC 246
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||
Sbjct 61 GCGGCAAAGGCTGTGAAATCTGGTCAAACCTTCAAGAAGAAGGACAAGAAGATTAGGACT 120
Query 247 AAGGTCACCTTCCACAGGCCAAAGACTCTTACCAAGCCTAGA-ACTGGTAAGTACCCAAA 305
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 121 AAGGTCACCTTCCACAGGCCAAAGACTCTTACCAAGCCCAGAGA-TGGTAAGTACCCAAG 179
Query 306 AATCAGCGCTACTCCAAGGAACAAGTTGGATCACTACCAAATCCTTAAGTACCCACTCAC 365
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 AATCAGCGCTACTCCAAGGAACAAGTTGGATCATTACCAAATCCTTAAGTACCCACTCAC 239
Query 366 CACTGAATCTGCGATGAAGAAGATTGAAGACAACAACACTCTTGT-TTTCATTGTTGACA 424
|||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 240 CACTGAATCTGCTATGAAGAAGATTGAAGACAACAACACTCTTGTCTTT-ATTGTTGACA 298
Query 425 TTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCA 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCA 358
Query 485 AGAAAGTGAACACACTCATCAGGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACAC 544
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGAAAGTGAATACACTCATCAGGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACAC 418
Query 545 CAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAA 591
||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 419 CAGACTATGATGCTTTGGATGTTGCTAACAAAATTGGCATCATCTAA 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29354646090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5