BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39470.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497434 jgi|Araly1|497434|fgenesh2_kg.463__2__AT2G39470.2 1149 0.0
Ahg482968 jgi|Araly1|482968|fgenesh2_kg.4__2028__AT2G39470.2 1147 0.0
> Ahg497434 jgi|Araly1|497434|fgenesh2_kg.463__2__AT2G39470.2
Length=1006
Score = 1149 bits (622), Expect = 0.0
Identities = 724/771 (94%), Gaps = 16/771 (2%)
Strand=Plus/Plus
Query 262 CTTACCAAAAAGGCAGCGGAAACAATTGGAAGAGAAGGCAAGCTCTTGTGGGAGTAGGAA 321
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTTACCAAAAAGGCAGCGGAAGCAATTGGAAGAGAAGGCAAGCTCTTGTGGGAGTAGGAA 295
Query 322 CTTTAGTGGCAACTTCAATTCCAGCAACTTTGCTTCTTGCTGAAGAGATACCAAAAAGCT 381
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 296 CCTTAGTGGCAACTTCAATTCCAGCAGCTTTGCTTCTTGCTGAAGAGATACCAAAAAGCT 355
Query 382 ACTCGCCTTTTGTGGATCGAGAAGACGGGTATTCTTACTATTACCCATCAGACTGGAGGG 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ACTCGCCTTTTGTGGATCGAGAAGACGGGTATTCTTACTATTACCCATCAGACTGGAGGG 415
Query 442 AATTTGACTTCAGGGCACATGATTCAGCCTTCAAAGATAGATACTTGCAACTGCAGAATG 501
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 416 AATTTGACTTCAGGGCGCATGATTCAGCCTTCAAAGACAGATATTTGCAACTGCAGAATG 475
Query 502 TGCGGGTCAGGTTCATACCAACGGAGAAAAACGACATCCATGAAGTAGGTCCTATGGAAG 561
| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 476 TTCGCGTCAGGTTCATACCAACTGAGAAAAACGACATCCGTGAAGTAGGTCCTATGGAAG 535
Query 562 AGGTGGTTTATGATCTAGTGAAGCATAAGTTTGCAGCACCAAACCAAGTAGCTACCATCT 621
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 536 AGGTGGTTTATGATCTAGTGAAGCATAAGTTTGCAGCACCAAACCAAGTAGCTACCATTT 595
Query 622 ACGATATGAAAGAGAGGGTGGAAGATGGAAAGAACTATTACACGTTTGAGTATGGACTAA 681
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 596 ACGATATGAAAGAGAGGGTGGAAGATGGAAGGAACTATTACACGTTTGAGTATGGACTTA 655
Query 682 GAACTCCTATCTATGCAACCACTTCCTTTGCAACAGTGGCAGTTGGAAACAACAGATACT 741
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GAACTCCCATCTATGCAACCACTTCCTTTGCAACAGTGGCAGTTGGAAACAACAGATACT 715
Query 742 ACACTCTCATAGTTGGAGCAAATGAGAGAAGGTGGAGGAAAGTGAAAAAGCAGCTTCAAG 801
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 716 ACACACTCATAGTTGGAGCAAATGAGAGGAGGTGGAGGAAAGTGAAAAAGCAGCTTCAAG 775
Query 802 TTGTGGCCGACTCTTTGAAGATCCTTCAGATTTGACAAACACAAGAAACATCTT-A---- 856
||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 776 TTGTGGCTGACTCTTTGAAGATCCTTGAGATTTGACAAACACAAGAAACATCTTTATGTT 835
Query 857 -CTCCTATATATCTTTCTCTCTCTGTGGTTACAAAACTGTCTGTAGATAACAATTTGATA 915
||||||| |||||||||||||||||||||||| || ||| ||||||| |||||||||||
Sbjct 836 ACTCCTATCTATCTTTCTCTCTCTGTGGTTACATAATTGTATGTAGATGACAATTTGATA 895
Query 916 T-TTTC-ATATTCTCTATAACTCCAACGATGGTTT-TGGCATTGTG-------AGTTAGA 965
| |||| || ||||| | ||||||||||||| ||| |||||||||| |||| ||
Sbjct 896 TATTTCCATCTTCTCCACAACTCCAACGATGTTTTATGGCATTGTGGCTTGTGAGTTGGA 955
Query 966 TTCTGAGTTGGTTCAGTAATTCAATCAAACTTGCAAATAAAGTGGAAATAA 1016
||||||||||||||||||||| |||||||||||||||||||||| | ||||
Sbjct 956 TTCTGAGTTGGTTCAGTAATTGAATCAAACTTGCAAATAAAGTGCATATAA 1006
Score = 283 bits (153), Expect = 2e-75
Identities = 215/242 (89%), Gaps = 15/242 (6%)
Strand=Plus/Plus
Query 1 ATCCACATGTTGATGAATGGAGAAGTCCGAGAAATGACGAAAATCAGAAATTTCTTAT-C 59
||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||| |
Sbjct 1 ATCCACATGTTAATGAATGGAGAAG-CAAAGAAATGACGAAAATCAGAAATGTCTTATCC 59
Query 60 -CACA-TAGAACACTAAGGCAATGTTCATTGA--TCATCAAAAGTCTTGTGAATTGTAGC 115
|||| ||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 60 ACACACAAGAACACTAAGGCAATGTTCATTGATCTCGTCTAAAGTCTTGTGAATTGTAGC 119
Query 116 CACTAT-G--GCAGTCTCCTCACTCTCAATCCGCTGTGGTGGTTTCTCACCAACAATCTC 172
|| ||| | |||||||| ||||||||||| |||| |||| | ||||||||||||||||
Sbjct 120 CATTATGGCAGCAGTCTCGTCACTCTCAATACGCTATGGT-G--TCTCACCAACAATCTC 176
Query 173 CCACAAGACAGAAATTCTCTGTCCAAATCCATCACTCAAAGCTTGTTGTTTACTTTCATC 232
|||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 177 CCACAAGACAGAGATTCTCTGTCCAAATCCATCACTCAAAGCTTGTT-T--ACTTTCATC 233
Query 233 CG 234
||
Sbjct 234 CG 235
> Ahg482968 jgi|Araly1|482968|fgenesh2_kg.4__2028__AT2G39470.2
Length=1014
Score = 1147 bits (621), Expect = 0.0
Identities = 729/779 (94%), Gaps = 15/779 (2%)
Strand=Plus/Plus
Query 262 CTTACCAAAAAGGCAGCGGAAACAATTGGAAGAGAAGGCAAGCTCTTGTGGGAGTAGGAA 321
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTTACCAAAAAGGCAGCGGAAGCAATTGGAAGAGAAGGCAAGCTCTTGTGGGAGTAGGAA 295
Query 322 CTTTAGTGGCAACTTCAATTCCAGCAACTTTGCTTCTTGCTGAAGAGATACCAAAAAGCT 381
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 296 CCTTAGTGGCAACTTCAATTCCAGCAGCTTTGCTTCTTGCTGAAGAGATACCAAAAAGCT 355
Query 382 ACTCGCCTTTTGTGGATCGAGAAGACGGGTATTCTTACTATTACCCATCAGACTGGAGGG 441
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 356 ACTCGCCTTTTGTGGATCGAGAAGACGGGTATTCTTATTATTACCCATCAGACTGGAGGG 415
Query 442 AATTTGACTTCAGGGCACATGATTCAGCCTTCAAAGATAGATACTTGCAACTGCAGAATG 501
|||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||
Sbjct 416 AATTTGACTTCAGGGCGCACGATTCAGCCTTCAAAGATAGATACCTGCAACTGCAGAATG 475
Query 502 TGCGGGTCAGGTTCATACCAACGGAGAAAAACGACATCCATGAAGTAGGTCCTATGGAAG 561
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 476 TGCGGGTCAGGTTCATACCAACCGAGAAAAACGACATCCGTGAAGTAGGTCCTATGGAAG 535
Query 562 AGGTGGTTTATGATCTAGTGAAGCATAAGTTTGCAGCACCAAACCAAGTAGCTACCATCT 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 536 AGGTGGTTTATGATCTAGTGAAGCATAAGTTTGCAGCACCAAACCAAGTAGCTACTATCT 595
Query 622 ACGATATGAAAGAGAGGGTGGAAGATGGAAAGAACTATTACACGTTTGAGTATGGACTAA 681
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 596 ACGATATGAAAGAGAGGGTGGAAGATGGAAGGAACTATTACACGTTTGAGTATGGACTAA 655
Query 682 GAACTCCTATCTATGCAACCACTTCCTTTGCAACAGTGGCAGTTGGAAACAACAGATACT 741
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GAACTCCCATCTATGCAACCACTTCCTTTGCAACAGTGGCAGTTGGAAACAACAGATACT 715
Query 742 ACACTCTCATAGTTGGAGCAAATGAGAGAAGGTGGAGGAAAGTGAAAAAGCAGCTTCAAG 801
| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 716 ATACACTCATAGTTGGAGCAAATGAGAGGAGGTGGAGGAAAGTGAAAAAGCAACTTCAAG 775
Query 802 TTGTGGCCGACTCTTTGAAGATCCTTCAGATTTGACAAACACAAGAAACATCTT-A---- 856
||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 776 TTGTGGCTGACTCTTTGAAGATCCTTGAGATTTGACAAACACAAGAAACATCTTTATGTT 835
Query 857 -CTCCTATATATCTTTCTCTCTCTGTGGTTACAAAACTGTCTGTAGATAACAATTTGATA 915
||||||| |||||||||||||||||||||||| || ||| ||||||| ||||||||||
Sbjct 836 ACTCCTATCTATCTTTCTCTCTCTGTGGTTACATAATTGTATGTAGATGACAATTTGATG 895
Query 916 TTTTC--ATATTCTCTATAACTCCAACGATGGTTTTGGCATTGTG-------AGTTAGAT 966
| ||| || ||||| | ||||||||||||| ||||||||||||| |||| |||
Sbjct 896 TATTCCCATCTTCTCCACAACTCCAACGATGTTTTTGGCATTGTGGCTTGTGAGTTGGAT 955
Query 967 TCTGAGTTGGTTCAGTAATTCAATCAAACTTGCAAATAAAGTGGAAATAATGTATTTAC 1025
| |||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 956 TTTGAGCTGGTTCAGTAATTGAATCAAACTTGCAAATAAAGTGCATATAATGTATTTAC 1014
Score = 283 bits (153), Expect = 2e-75
Identities = 215/242 (89%), Gaps = 15/242 (6%)
Strand=Plus/Plus
Query 1 ATCCACATGTTGATGAATGGAGAAGTCCGAGAAATGACGAAAATCAGAAATTTCTTAT-C 59
||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||| |
Sbjct 1 ATCCACATGTTAATGAATGGAGAAG-CAAAGAAATGACGAAAATCAGAAATGTCTTATCC 59
Query 60 -CACA-TAGAACACTAAGGCAATGTTCATTGA--TCATCAAAAGTCTTGTGAATTGTAGC 115
|||| ||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 60 ACACACAAGAACACTAAGGCAATGTTCATTGATCTCGTCTAAAGTCTTGTGAATTGTAGC 119
Query 116 CACTAT-G--GCAGTCTCCTCACTCTCAATCCGCTGTGGTGGTTTCTCACCAACAATCTC 172
|| ||| | |||||||| ||||||||||| |||| |||| | ||||||||||||||||
Sbjct 120 CATTATGGCAGCAGTCTCGTCACTCTCAATACGCTATGGT-G--TCTCACCAACAATCTC 176
Query 173 CCACAAGACAGAAATTCTCTGTCCAAATCCATCACTCAAAGCTTGTTGTTTACTTTCATC 232
|||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 177 CCACAAGACAGAGATTCTCTGTCCAAATCCATCACTCAAAGCTTGTT-T--ACTTTCATC 233
Query 233 CG 234
||
Sbjct 234 CG 235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5