BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39490.1
Length=1594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482972 jgi|Araly1|482972|fgenesh2_kg.4__2032__AT2G39490.1 2001 0.0
Ahg497550 jgi|Araly1|497550|fgenesh2_kg.938__1__AT2G39490.1 1652 0.0
> Ahg482972 jgi|Araly1|482972|fgenesh2_kg.4__2032__AT2G39490.1
Length=1545
Score = 2001 bits (1083), Expect = 0.0
Identities = 1350/1474 (92%), Gaps = 37/1474 (3%)
Strand=Plus/Plus
Query 29 TATATATCAAGAAGTGTGTTTAACAACAAAAGTAACATGATCGACGCCGAGAATCCAGTT 88
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1 TATATATCAAGAAGTGTGTTTAACAACAAAAGTAACATGATCAACGCCGAGAATCCAGCT 60
Query 89 TTATGAAAATCCAAATCCGTACGTACC-TAAACGTACATTTCTTTAAAACCTCTCCATAG 147
|||| |||| ||||||||||||||||| ||||||||| |||||||||||||||||| | |
Sbjct 61 TTATAAAAACCCAAATCCGTACGTACCATAAACGTACTTTTCTTTAAAACCTCTCCGTTG 120
Query 148 CAAATTCAAAGCAATACCTCACAGTGAAATAACCATGGAGGAACACAAACCAGATATCCT 207
|||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 121 CAAATTCAAAGC---ACCTCAAAGTGCAATAACCATGGAGGAACACAAACCAGACATCCT 177
Query 208 CTCGTGCCTACCGCTAGAGCTTCTACTCTACATCATCAGCTTCCTCCCTTTCGAATCCGC 267
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 CTCAAGCCTACCGCTAGAGCTTCTCCTCTACATCATCAGCTTCCTCCCTTTCGAATCCGC 237
Query 268 AAGACTAACCCCTTTGGTCTCCACACGGTTTAGGTCCGTTTGGAACCAAGCCATACTCGT 327
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 238 AAGACTAATCCCTTTGGTCTCCACACGGTTTAGGTCCGTTTGGAACCAAGCCTTACTCGT 297
Query 328 CGCTCACAGCCACAACGGCTCCATCGAAGACATATCTCATGCT-GTCTCTCGCTTCATCA 386
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 298 CGCTCACAGCCACAACGGCTCCATCGAAGACATATCTCACG-TCGTCTCTCGCTTCATCA 356
Query 387 ACAACTTCGATGAGCATGATCCTTCTAAAAACACTCGGAAGCTGGAGTTACACGTTGACA 446
|||||||||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 357 ACAACTTCGACGAGCATGATCCTACTAAAAACACTCGGAGGCTAGAGTTACACGTTGACA 416
Query 447 AGTCAACCTTCGTGTCCACTATTCTCGCACCTCATAACGTCATGCATATGAGCTTCTTCT 506
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 417 AGTCAACCTTCGTGTCCACTATTCTCGCACCTCATAACCTCATGCATATGAGCTTCTTCT 476
Query 507 TCTCCGGTGGTTCTAAGAAAGAAGAGAGCTTTTGCTGGCGTCTTGAGATCGACGATCAGA 566
|||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 477 TCTCTGGTGGTTCTAACAAAGAAGAGAGCTTTTGCTGGCGTCTTGAGATCAATGATCAGA 536
Query 567 TCCCAAGACGTGTGGA--C-TCAAGCGGTTTCTTGGTGAAGACGCTTTGTTTAGACTCCG 623
|||||||||||| | | | |||||||||||||||||||||||||||||||||| ||| |
Sbjct 537 TCCCAAGACGTGAGTACTCATCAAGCGGTTTCTTGGTGAAGACGCTTTGTTTAGCCTCGG 596
Query 624 TTAATTCCTTAACCCATGAGGTTGTTTCCTCAATGGTTTTGGAATTTTCTTTACTTGACA 683
| ||||| |||||| | ||||| |||||||| ||||| |||||||||||||||||||| |
Sbjct 597 TGAATTCGTTAACCTACGAGGTCGTTTCCTCCATGGTATTGGAATTTTCTTTACTTGATA 656
Query 684 GCCTCAAGATTTGTCGTTGTAAGAGATTGACTTCTCTCACTATTGATTCACCAACTAAGC 743
|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 657 GCCTCAAGATTTGTGGTTGCAAGGGATTGACTTCTCTCACTATTGATTCACCAACTAAGC 716
Query 744 TTCTTCACTTGTCCATCTCGGGATGCCCGAAGCTGAGATACCTCGAGATCATATCATTTA 803
|||||||||| || |||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct 717 TTCTTCACTTATCAATCTCGGGATGCCCGAAGCTGAGATATCTCGAGATCAGATCATTGA 776
Query 804 AGCTTAAAACTTTTCATTACCAAGGATCTCTACCTTTGATCAAGATTCATGAACATTTCA 863
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGCTTAAAACTTTTCAATACCAAGGATCTCTACCTTTGATCAAGATTCATGAACATTTCA 836
Query 864 ACTTGACCAAGGCGGTTTTCGATGTAACACAAGGCCCAAGCTATTACAACAACGCGTTAG 923
||||||||| |||| |||| || |||| |||||||||| | ||||||||||| || ||||
Sbjct 837 ACTTGACCAGGGCGATTTTTGACGTAAGACAAGGCCCATGTTATTACAACAATGCTTTAG 896
Query 924 ACATCGGTCCTCTCTCGCTGACCATCAAGAATTCTCAATCTCTTACACTATGCAGATGGA 983
|||| |||||||||| ||||| |||||||||||||||||||||||| || ||||||||||
Sbjct 897 ACATGGGTCCTCTCTTGCTGATCATCAAGAATTCTCAATCTCTTACTCTTTGCAGATGGA 956
Query 984 TGTTCGAGGAAGTAATCAAACCGTCCATATCATCATCTTGGAGATCATTCCAATTCTACA 1043
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGTTCGAGGAAGTAATAAAACCGTCCATATCATCATCTTGGAGATCATTCCAATTCTACA 1016
Query 1044 AGTTACAAGAATTGCGGTGGATCGATAACTCGATGAACCAAGAACAA-ATTAATTCTTTG 1102
||||||||||||||| |||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1017 AGTTACAAGAATTGCAGTGGATCGATAACTCGATGAACCAAGAA-AACATTAATTCCATG 1075
Query 1103 ATCTCTTTTCTCAAACTTTGTCCATCAATAGAGCGCCTCTTCATTACTATCGATTCAAAT 1162
|| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||
Sbjct 1076 ATTTCTTTTCTCAAACTTTGCCCATCAATCGAGCGCCTCTTCATTTCTATCGATTCAAAT 1135
Query 1163 ACTTATAGTTCAAACGAAGAAGTTAGTGTTAATGCTGACCATGCAAG--AG--T--A-G- 1214
|||||||||||||||||||||||||||||| |||||| ||||||| | || | | |
Sbjct 1136 ACTTATAGTTCAAACGAAGAAGTTAGTGTTGATGCTGTCCATGCATGCGAGCATGCAAGA 1195
Query 1215 -TACTAAGGGATCTAGAAG-TGGTCAAATTGGAAGGATTCAAGAGTGAAGA-AGATAAGA 1271
||||||||||||| ||| |||||||||||||||||||| |||||||||| | |||| |
Sbjct 1196 GTACTAAGGGATCT-GAAACTGGTCAAATTGGAAGGATTCGAGAGTGAAGATA-ATAAAA 1253
Query 1272 ATCAACTGATATTTGCTCTACAAGAGATAGTCAGTA-TCGATCAGCCTCTGCTTGTACTG 1330
||||||||||||| ||||||||| |||||||||||| | ||||||| |||||||||||||
Sbjct 1254 ATCAACTGATATTGGCTCTACAACAGATAGTCAGTAAT-GATCAGCTTCTGCTTGTACTG 1312
Query 1331 TCTTCAATTTCTTGA---C--T--TCGG-CTTGGAATGGAAACGACAAAAGAGTTATGTC 1382
||||| ||||||||| | | || | ||||||||||||||||||||||| |||||||
Sbjct 1313 TCTTCGATTTCTTGAGATCGATACTCTGACTTGGAATGGAAACGACAAAAGATTTATGTC 1372
Query 1383 TAAAGATACACGTATGAACATGCTTTAATTAACCTGCTGTCATTTTAACGCGTGGATATA 1442
|||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1373 TAAATATACACGCATGAACATGCTTTAATTAATCTGCTGTCATTTTAACGCGTGGAT-TC 1431
Query 1443 TTCCATTTCTTGCTATACAAGAAATCCTCGTGTA 1476
| |||||||||| ||||||||| |||||||||
Sbjct 1432 CT--ATTTCTTGCTGTACAAGAAACCCTCGTGTA 1463
Score = 132 bits (71), Expect = 9e-30
Identities = 79/83 (95%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 1512 ATTAAAGATTTTTCACCAGTATGTATTATTGTAATGTACTTACTATGATAAATTACTTAA 1571
|||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||
Sbjct 1463 ATTAAAGATTTTTCACCAGTATGTATTATTCTAATGTATTTACTATGATATATTAATTAA 1522
Query 1572 AACAACATCAAGTTGATTTTCGC 1594
|||||||||||||||||||||||
Sbjct 1523 AACAACATCAAGTTGATTTTCGC 1545
> Ahg497550 jgi|Araly1|497550|fgenesh2_kg.938__1__AT2G39490.1
Length=1257
Score = 1652 bits (894), Expect = 0.0
Identities = 1095/1187 (92%), Gaps = 33/1187 (3%)
Strand=Plus/Plus
Query 432 AGTTACACGTTGACAAGTCAACCTTCGTGTCCACTATTCTCGCACCTCATAACGTCATGC 491
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 80 AGTTACACGTTGACAAGTCAGCCTTCGTGTCCACTATTCTCGCACCTCATAACGTCATGC 139
Query 492 ATATGAGCTTCTTCTTCTCCGGTGGTTCTAAGAAAGAAGAGAGCTTTTGCTGGCGTCTTG 551
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 140 ATATGAGCTTCTTCTTCTCTGGTGGTTCTAACAAAGAAGAGAGCTTTTGCTGGCGTCTTG 199
Query 552 AGATCGACGATCAGATCCCAAGACGTGTGGACTCAAGCGGTTTCTTGGTGAAGACGCTTT 611
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 AGATCAACGATCAGATCCCAAGACGTGTGGACTCAAGCGGTTTCTTGGTGAAGACGCTTT 259
Query 612 GTTTAGACTCCGTTAATTCCTTAACCCATGAGGTTGTTTCCTCAATGGTTTTGGAATTTT 671
|||||||||| || ||||| |||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 260 GTTTAGACTCGGTGAATTCGTTAACCCACGAGGTCGTTTCCTCCATGGTATTGGAATTTT 319
Query 672 CTTTACTTGACAGCCTCAAGATTTGTCGTTGTAAGAGATTGACTTCTCTCACTATTGATT 731
|||||||||| ||||||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct 320 CTTTACTTGATAGCCTCAAGATTTGTGGTTGCAAGGGATTGACTTCTCTCACTATTGATT 379
Query 732 CACCAACTAAGCTTCTTCACTTGTCCATCTCGGGATGCCCGAAGCTGAGATACCTCGAGA 791
|||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 380 CACCAACTAAGCTTCTTCACTTATCAATCTCGGGATGCCCGAAGCTGAGATATCTCGAGA 439
Query 792 TCATATCATTTAAGCTTAAAACTTTTCATTACCAAGGATCTCTACCTTTGATCAAGATTC 851
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TCAGATCATTTAAGCTTAAAACTTTTCATTACCAAGGATCTCTACCTTTGATCAAGATTC 499
Query 852 ATGAACATTTCAACTTGACCAAGGCGGTTTTCGATGTAACACAAGGCCCAAGCTATTACA 911
|||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||
Sbjct 500 ATGAACATTTCAACTTGACCAAGGCGATTTTCGACGTAACACAAGGTCCAAGTTATTACA 559
Query 912 ACAACGCG-TTAGACATCGGTCCTCTCTCGCTGACCATCAAGAATTCTCAATCTCTTACA 970
|||||| | ||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 560 ACAACG-GTTTAGACATCGGTCCTCTCTCGCTGATCATCAAGAATTCTCAATATCTTACA 618
Query 971 CTATGCAGATGGATGTTCGAGGAAGTAATCAAACCGTCCATATCATCATCTTGGAGATCA 1030
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 CTTTGCAGATGGATGTTCGAGGAAGTAATCAAACCGTCCATATCATCATCTTGGAGATCA 678
Query 1031 TTCCAATTCTACAAGTTACAAGAATTGCGGTGGATCGATAACTCGATGAACCAAGAACAA 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 679 TTCCAATTCTACAAGTTACAAGAATTGCGGTGGATCGATAACTCGATGAACCAAGAA-AA 737
Query 1091 -ATTAATTCTTTGATCTCTTTTCTCAAACTTTGTCCATCAATAGAGCGCCTCTTCATT-A 1148
|||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 738 CATTAATTCCATGATTTCTTTTCTCAAACTTTGCCCATCAATCGAGCGCCTCTTCATTGA 797
Query 1149 CTATCGATTCAAATACTTATAGTTCAAACGAAGAAGTTAGTGTTAATGCTGACCATGCAA 1208
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 798 -TATCGATTCAAATACTTATAGTTCAAACGAAGAAGTTAGTGTTGATGCTGTCCATGCAT 856
Query 1209 G--AG--T--A-G--TACTAAGGGATCTAGAAG-TGGTCAAATTGGAAGGATTCAAGAGT 1258
| || | | | ||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 857 GCGAGCATGCAAGAGTACTAAGGGATCT-GAAACTGGTCAAATTGGAAGGATTCGAGAGT 915
Query 1259 GAAGA-AGATAAGAATCAACTGATATTTGCTCTACAAGAGATAGTCAGTA-TCGATCAGC 1316
||||| | |||| |||||||||||||| ||||||||| |||||||||||| | |||||||
Sbjct 916 GAAGATA-ATAAAAATCAACTGATATTGGCTCTACAACAGATAGTCAGTAAT-GATCAGC 973
Query 1317 CTCTGCTTGTACTGTCTTCAATTTCTTGA---C--T--TCGG-CTTGGAATGGAAACGAC 1368
|||||||||||||||||| ||||||||| | | || | |||||||||||||||||
Sbjct 974 TTCTGCTTGTACTGTCTTCGATTTCTTGAGATCGATACTCTGACTTGGAATGGAAACGAC 1033
Query 1369 AAAAGAGTTATGTCTAAAGATACACGTATGAACATGCTTTAATTAACCTGCTGTCATTTT 1428
|||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1034 AAAAGATTTATGTCTAAATATACACGCATGAACATGCTTTAATTAATCTGCTGTCATTTT 1093
Query 1429 AACGCGTGGATATATTCCATTTCTTGCTATACAAGAAATCCTCGTGTAAACGGAACTTAA 1488
||||||||||| | | |||||||||| ||||||||| |||||||||||| ||||| ||
Sbjct 1094 AACGCGTGGAT-TCCT--ATTTCTTGCTGTACAAGAAACCCTCGTGTAAACTGAACTCAA 1150
Query 1489 ATTTGGCTACGTCAAGTTTACAGATT-AAAGATTTTTCACCAGTATGTATTATTGTAATG 1547
|||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct 1151 ATTTGGCTTCGTCAAGTTCGCAGATTTAAAGATTTTTCACCAGTATGTATTATTCTAATG 1210
Query 1548 TACTTACTATGATAAATTACTTAAAACAACATCAAGTTGATTTTCGC 1594
|| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1211 TATTTACTATGATATATTAATTAAAACAACATCAAGTTGATTTTCGC 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59725504160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5