BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39490.1 Length=1594 Score E Sequences producing significant alignments: (Bits) Value Ahg482972 jgi|Araly1|482972|fgenesh2_kg.4__2032__AT2G39490.1 2001 0.0 Ahg497550 jgi|Araly1|497550|fgenesh2_kg.938__1__AT2G39490.1 1652 0.0 > Ahg482972 jgi|Araly1|482972|fgenesh2_kg.4__2032__AT2G39490.1 Length=1545 Score = 2001 bits (1083), Expect = 0.0 Identities = 1350/1474 (92%), Gaps = 37/1474 (3%) Strand=Plus/Plus Query 29 TATATATCAAGAAGTGTGTTTAACAACAAAAGTAACATGATCGACGCCGAGAATCCAGTT 88 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 1 TATATATCAAGAAGTGTGTTTAACAACAAAAGTAACATGATCAACGCCGAGAATCCAGCT 60 Query 89 TTATGAAAATCCAAATCCGTACGTACC-TAAACGTACATTTCTTTAAAACCTCTCCATAG 147 |||| |||| ||||||||||||||||| ||||||||| |||||||||||||||||| | | Sbjct 61 TTATAAAAACCCAAATCCGTACGTACCATAAACGTACTTTTCTTTAAAACCTCTCCGTTG 120 Query 148 CAAATTCAAAGCAATACCTCACAGTGAAATAACCATGGAGGAACACAAACCAGATATCCT 207 |||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 121 CAAATTCAAAGC---ACCTCAAAGTGCAATAACCATGGAGGAACACAAACCAGACATCCT 177 Query 208 CTCGTGCCTACCGCTAGAGCTTCTACTCTACATCATCAGCTTCCTCCCTTTCGAATCCGC 267 ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 178 CTCAAGCCTACCGCTAGAGCTTCTCCTCTACATCATCAGCTTCCTCCCTTTCGAATCCGC 237 Query 268 AAGACTAACCCCTTTGGTCTCCACACGGTTTAGGTCCGTTTGGAACCAAGCCATACTCGT 327 |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 238 AAGACTAATCCCTTTGGTCTCCACACGGTTTAGGTCCGTTTGGAACCAAGCCTTACTCGT 297 Query 328 CGCTCACAGCCACAACGGCTCCATCGAAGACATATCTCATGCT-GTCTCTCGCTTCATCA 386 ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| Sbjct 298 CGCTCACAGCCACAACGGCTCCATCGAAGACATATCTCACG-TCGTCTCTCGCTTCATCA 356 Query 387 ACAACTTCGATGAGCATGATCCTTCTAAAAACACTCGGAAGCTGGAGTTACACGTTGACA 446 |||||||||| |||||||||||| ||||||||||||||| ||| |||||||||||||||| Sbjct 357 ACAACTTCGACGAGCATGATCCTACTAAAAACACTCGGAGGCTAGAGTTACACGTTGACA 416 Query 447 AGTCAACCTTCGTGTCCACTATTCTCGCACCTCATAACGTCATGCATATGAGCTTCTTCT 506 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 417 AGTCAACCTTCGTGTCCACTATTCTCGCACCTCATAACCTCATGCATATGAGCTTCTTCT 476 Query 507 TCTCCGGTGGTTCTAAGAAAGAAGAGAGCTTTTGCTGGCGTCTTGAGATCGACGATCAGA 566 |||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| Sbjct 477 TCTCTGGTGGTTCTAACAAAGAAGAGAGCTTTTGCTGGCGTCTTGAGATCAATGATCAGA 536 Query 567 TCCCAAGACGTGTGGA--C-TCAAGCGGTTTCTTGGTGAAGACGCTTTGTTTAGACTCCG 623 |||||||||||| | | | |||||||||||||||||||||||||||||||||| ||| | Sbjct 537 TCCCAAGACGTGAGTACTCATCAAGCGGTTTCTTGGTGAAGACGCTTTGTTTAGCCTCGG 596 Query 624 TTAATTCCTTAACCCATGAGGTTGTTTCCTCAATGGTTTTGGAATTTTCTTTACTTGACA 683 | ||||| |||||| | ||||| |||||||| ||||| |||||||||||||||||||| | Sbjct 597 TGAATTCGTTAACCTACGAGGTCGTTTCCTCCATGGTATTGGAATTTTCTTTACTTGATA 656 Query 684 GCCTCAAGATTTGTCGTTGTAAGAGATTGACTTCTCTCACTATTGATTCACCAACTAAGC 743 |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 657 GCCTCAAGATTTGTGGTTGCAAGGGATTGACTTCTCTCACTATTGATTCACCAACTAAGC 716 Query 744 TTCTTCACTTGTCCATCTCGGGATGCCCGAAGCTGAGATACCTCGAGATCATATCATTTA 803 |||||||||| || |||||||||||||||||||||||||| |||||||||| |||||| | Sbjct 717 TTCTTCACTTATCAATCTCGGGATGCCCGAAGCTGAGATATCTCGAGATCAGATCATTGA 776 Query 804 AGCTTAAAACTTTTCATTACCAAGGATCTCTACCTTTGATCAAGATTCATGAACATTTCA 863 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 AGCTTAAAACTTTTCAATACCAAGGATCTCTACCTTTGATCAAGATTCATGAACATTTCA 836 Query 864 ACTTGACCAAGGCGGTTTTCGATGTAACACAAGGCCCAAGCTATTACAACAACGCGTTAG 923 ||||||||| |||| |||| || |||| |||||||||| | ||||||||||| || |||| Sbjct 837 ACTTGACCAGGGCGATTTTTGACGTAAGACAAGGCCCATGTTATTACAACAATGCTTTAG 896 Query 924 ACATCGGTCCTCTCTCGCTGACCATCAAGAATTCTCAATCTCTTACACTATGCAGATGGA 983 |||| |||||||||| ||||| |||||||||||||||||||||||| || |||||||||| Sbjct 897 ACATGGGTCCTCTCTTGCTGATCATCAAGAATTCTCAATCTCTTACTCTTTGCAGATGGA 956 Query 984 TGTTCGAGGAAGTAATCAAACCGTCCATATCATCATCTTGGAGATCATTCCAATTCTACA 1043 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 TGTTCGAGGAAGTAATAAAACCGTCCATATCATCATCTTGGAGATCATTCCAATTCTACA 1016 Query 1044 AGTTACAAGAATTGCGGTGGATCGATAACTCGATGAACCAAGAACAA-ATTAATTCTTTG 1102 ||||||||||||||| |||||||||||||||||||||||||||| || |||||||| || Sbjct 1017 AGTTACAAGAATTGCAGTGGATCGATAACTCGATGAACCAAGAA-AACATTAATTCCATG 1075 Query 1103 ATCTCTTTTCTCAAACTTTGTCCATCAATAGAGCGCCTCTTCATTACTATCGATTCAAAT 1162 || ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| Sbjct 1076 ATTTCTTTTCTCAAACTTTGCCCATCAATCGAGCGCCTCTTCATTTCTATCGATTCAAAT 1135 Query 1163 ACTTATAGTTCAAACGAAGAAGTTAGTGTTAATGCTGACCATGCAAG--AG--T--A-G- 1214 |||||||||||||||||||||||||||||| |||||| ||||||| | || | | | Sbjct 1136 ACTTATAGTTCAAACGAAGAAGTTAGTGTTGATGCTGTCCATGCATGCGAGCATGCAAGA 1195 Query 1215 -TACTAAGGGATCTAGAAG-TGGTCAAATTGGAAGGATTCAAGAGTGAAGA-AGATAAGA 1271 ||||||||||||| ||| |||||||||||||||||||| |||||||||| | |||| | Sbjct 1196 GTACTAAGGGATCT-GAAACTGGTCAAATTGGAAGGATTCGAGAGTGAAGATA-ATAAAA 1253 Query 1272 ATCAACTGATATTTGCTCTACAAGAGATAGTCAGTA-TCGATCAGCCTCTGCTTGTACTG 1330 ||||||||||||| ||||||||| |||||||||||| | ||||||| ||||||||||||| Sbjct 1254 ATCAACTGATATTGGCTCTACAACAGATAGTCAGTAAT-GATCAGCTTCTGCTTGTACTG 1312 Query 1331 TCTTCAATTTCTTGA---C--T--TCGG-CTTGGAATGGAAACGACAAAAGAGTTATGTC 1382 ||||| ||||||||| | | || | ||||||||||||||||||||||| ||||||| Sbjct 1313 TCTTCGATTTCTTGAGATCGATACTCTGACTTGGAATGGAAACGACAAAAGATTTATGTC 1372 Query 1383 TAAAGATACACGTATGAACATGCTTTAATTAACCTGCTGTCATTTTAACGCGTGGATATA 1442 |||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1373 TAAATATACACGCATGAACATGCTTTAATTAATCTGCTGTCATTTTAACGCGTGGAT-TC 1431 Query 1443 TTCCATTTCTTGCTATACAAGAAATCCTCGTGTA 1476 | |||||||||| ||||||||| ||||||||| Sbjct 1432 CT--ATTTCTTGCTGTACAAGAAACCCTCGTGTA 1463 Score = 132 bits (71), Expect = 9e-30 Identities = 79/83 (95%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 1512 ATTAAAGATTTTTCACCAGTATGTATTATTGTAATGTACTTACTATGATAAATTACTTAA 1571 |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||| Sbjct 1463 ATTAAAGATTTTTCACCAGTATGTATTATTCTAATGTATTTACTATGATATATTAATTAA 1522 Query 1572 AACAACATCAAGTTGATTTTCGC 1594 ||||||||||||||||||||||| Sbjct 1523 AACAACATCAAGTTGATTTTCGC 1545 > Ahg497550 jgi|Araly1|497550|fgenesh2_kg.938__1__AT2G39490.1 Length=1257 Score = 1652 bits (894), Expect = 0.0 Identities = 1095/1187 (92%), Gaps = 33/1187 (3%) Strand=Plus/Plus Query 432 AGTTACACGTTGACAAGTCAACCTTCGTGTCCACTATTCTCGCACCTCATAACGTCATGC 491 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 80 AGTTACACGTTGACAAGTCAGCCTTCGTGTCCACTATTCTCGCACCTCATAACGTCATGC 139 Query 492 ATATGAGCTTCTTCTTCTCCGGTGGTTCTAAGAAAGAAGAGAGCTTTTGCTGGCGTCTTG 551 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 140 ATATGAGCTTCTTCTTCTCTGGTGGTTCTAACAAAGAAGAGAGCTTTTGCTGGCGTCTTG 199 Query 552 AGATCGACGATCAGATCCCAAGACGTGTGGACTCAAGCGGTTTCTTGGTGAAGACGCTTT 611 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 200 AGATCAACGATCAGATCCCAAGACGTGTGGACTCAAGCGGTTTCTTGGTGAAGACGCTTT 259 Query 612 GTTTAGACTCCGTTAATTCCTTAACCCATGAGGTTGTTTCCTCAATGGTTTTGGAATTTT 671 |||||||||| || ||||| |||||||| ||||| |||||||| ||||| |||||||||| Sbjct 260 GTTTAGACTCGGTGAATTCGTTAACCCACGAGGTCGTTTCCTCCATGGTATTGGAATTTT 319 Query 672 CTTTACTTGACAGCCTCAAGATTTGTCGTTGTAAGAGATTGACTTCTCTCACTATTGATT 731 |||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||||||| Sbjct 320 CTTTACTTGATAGCCTCAAGATTTGTGGTTGCAAGGGATTGACTTCTCTCACTATTGATT 379 Query 732 CACCAACTAAGCTTCTTCACTTGTCCATCTCGGGATGCCCGAAGCTGAGATACCTCGAGA 791 |||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| Sbjct 380 CACCAACTAAGCTTCTTCACTTATCAATCTCGGGATGCCCGAAGCTGAGATATCTCGAGA 439 Query 792 TCATATCATTTAAGCTTAAAACTTTTCATTACCAAGGATCTCTACCTTTGATCAAGATTC 851 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 440 TCAGATCATTTAAGCTTAAAACTTTTCATTACCAAGGATCTCTACCTTTGATCAAGATTC 499 Query 852 ATGAACATTTCAACTTGACCAAGGCGGTTTTCGATGTAACACAAGGCCCAAGCTATTACA 911 |||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||| Sbjct 500 ATGAACATTTCAACTTGACCAAGGCGATTTTCGACGTAACACAAGGTCCAAGTTATTACA 559 Query 912 ACAACGCG-TTAGACATCGGTCCTCTCTCGCTGACCATCAAGAATTCTCAATCTCTTACA 970 |||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 560 ACAACG-GTTTAGACATCGGTCCTCTCTCGCTGATCATCAAGAATTCTCAATATCTTACA 618 Query 971 CTATGCAGATGGATGTTCGAGGAAGTAATCAAACCGTCCATATCATCATCTTGGAGATCA 1030 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 619 CTTTGCAGATGGATGTTCGAGGAAGTAATCAAACCGTCCATATCATCATCTTGGAGATCA 678 Query 1031 TTCCAATTCTACAAGTTACAAGAATTGCGGTGGATCGATAACTCGATGAACCAAGAACAA 1090 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 679 TTCCAATTCTACAAGTTACAAGAATTGCGGTGGATCGATAACTCGATGAACCAAGAA-AA 737 Query 1091 -ATTAATTCTTTGATCTCTTTTCTCAAACTTTGTCCATCAATAGAGCGCCTCTTCATT-A 1148 |||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||| | Sbjct 738 CATTAATTCCATGATTTCTTTTCTCAAACTTTGCCCATCAATCGAGCGCCTCTTCATTGA 797 Query 1149 CTATCGATTCAAATACTTATAGTTCAAACGAAGAAGTTAGTGTTAATGCTGACCATGCAA 1208 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 798 -TATCGATTCAAATACTTATAGTTCAAACGAAGAAGTTAGTGTTGATGCTGTCCATGCAT 856 Query 1209 G--AG--T--A-G--TACTAAGGGATCTAGAAG-TGGTCAAATTGGAAGGATTCAAGAGT 1258 | || | | | ||||||||||||| ||| |||||||||||||||||||| ||||| Sbjct 857 GCGAGCATGCAAGAGTACTAAGGGATCT-GAAACTGGTCAAATTGGAAGGATTCGAGAGT 915 Query 1259 GAAGA-AGATAAGAATCAACTGATATTTGCTCTACAAGAGATAGTCAGTA-TCGATCAGC 1316 ||||| | |||| |||||||||||||| ||||||||| |||||||||||| | ||||||| Sbjct 916 GAAGATA-ATAAAAATCAACTGATATTGGCTCTACAACAGATAGTCAGTAAT-GATCAGC 973 Query 1317 CTCTGCTTGTACTGTCTTCAATTTCTTGA---C--T--TCGG-CTTGGAATGGAAACGAC 1368 |||||||||||||||||| ||||||||| | | || | ||||||||||||||||| Sbjct 974 TTCTGCTTGTACTGTCTTCGATTTCTTGAGATCGATACTCTGACTTGGAATGGAAACGAC 1033 Query 1369 AAAAGAGTTATGTCTAAAGATACACGTATGAACATGCTTTAATTAACCTGCTGTCATTTT 1428 |||||| ||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| Sbjct 1034 AAAAGATTTATGTCTAAATATACACGCATGAACATGCTTTAATTAATCTGCTGTCATTTT 1093 Query 1429 AACGCGTGGATATATTCCATTTCTTGCTATACAAGAAATCCTCGTGTAAACGGAACTTAA 1488 ||||||||||| | | |||||||||| ||||||||| |||||||||||| ||||| || Sbjct 1094 AACGCGTGGAT-TCCT--ATTTCTTGCTGTACAAGAAACCCTCGTGTAAACTGAACTCAA 1150 Query 1489 ATTTGGCTACGTCAAGTTTACAGATT-AAAGATTTTTCACCAGTATGTATTATTGTAATG 1547 |||||||| ||||||||| |||||| ||||||||||||||||||||||||||| ||||| Sbjct 1151 ATTTGGCTTCGTCAAGTTCGCAGATTTAAAGATTTTTCACCAGTATGTATTATTCTAATG 1210 Query 1548 TACTTACTATGATAAATTACTTAAAACAACATCAAGTTGATTTTCGC 1594 || ||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 1211 TATTTACTATGATATATTAATTAAAACAACATCAAGTTGATTTTCGC 1257 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59725504160 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5