BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G39500.1

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934715 jgi|Araly1|934715|scaffold_402703.1                        333    6e-91
  Ahg934713 jgi|Araly1|934713|scaffold_402701.1                        281    2e-75


> Ahg934715 jgi|Araly1|934715|scaffold_402703.1
Length=209

 Score =  333 bits (180),  Expect = 6e-91
 Identities = 199/208 (96%), Gaps = 2/208 (1%)
 Strand=Plus/Plus

Query  1    GCTTAACGAAAGGGTTTAATGGCGACGAGATTCGATGTGAAGACGATCGTCAAGGACAAG  60
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  4    GCTTAACGAAAGGGTTTAATGGCGACGAGATTTGATGTGAAGACGATCGTCAAGGACAAG  63

Query  61   AGATTCTGGATTGCTTCCTTCATCATCGTCTGGGCTGCTGGTCTTCAGGGTCACATGATG  120
            ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  64   AGATTCTGGGTTGCTTCCTTCCTCATCGTCTGGGCTGCTGGTCTTCAGGGTCACATGATG  123

Query  121  TGGCTGCAGAAGCAAGAATCTTTCAAGCAGAAATTTGGAACAATCGATGAAGACGACCAC  180
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  124  TGGCTGCAGAAGCAAGAATCTTTCAAGCAGAAATTCGGAACAATCGATGAAGACGATCAC  183

Query  181  AAGTGATTCATGACTTTATTACGTCTCT  208
            ||||||| ||||| ||||| | ||||||
Sbjct  184  AAGTGAT-CATGAGTTTAT-ATGTCTCT  209


> Ahg934713 jgi|Araly1|934713|scaffold_402701.1
Length=205

 Score =  281 bits (152),  Expect = 2e-75
 Identities = 169/177 (95%), Gaps = 1/177 (1%)
 Strand=Plus/Plus

Query  30   ATTCGATGTGAAGACGATCGTCAAGGACAAGAGATTCTGGATTGCTTCCTTCATCATCGT  89
            |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct  28   ATTCGATGTGAAGACGATCGTCAAGGACAAGAGATTCTGGGTCGCTTCCTTCCTCATCGT  87

Query  90   CTGGGCTGCTGGTCTTCAGGGTCACATGATGTGGCTGCAGAAGCAAGAATCTTTCAAGCA  149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  88   CTGGGCTGCTGGTCTTCAGGGTCACATGATGTGGCTGCAGAAGCAAGAATCTTTCAAGCA  147

Query  150  GAAATTTGGAACAATCGATGAAGACGACCACAAGTGATTCATGACTTTATTACGTCT  206
            |||||| |||||||||||||||||||| |||||||||||||||| ||||| | ||||
Sbjct  148  GAAATTCGGAACAATCGATGAAGACGATCACAAGTGATTCATGAGTTTAT-ATGTCT  203



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14346501464


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5