BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39510.1
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482973 jgi|Araly1|482973|fgenesh2_kg.4__2033__AT2G39510.1 2156 0.0
> Ahg482973 jgi|Araly1|482973|fgenesh2_kg.4__2033__AT2G39510.1
Length=1409
Score = 2156 bits (1167), Expect = 0.0
Identities = 1335/1415 (94%), Gaps = 15/1415 (1%)
Strand=Plus/Plus
Query 1 ATCAGCTCTTTCTTACATCATATTCCAA--TC-TATCACTTTATAACAAATTAAAGTCTA 57
|||||||||||||||||||||||| ||| || ||||||||||| |||||| |||| ||
Sbjct 1 ATCAGCTCTTTCTTACATCATATTGCAATTTCACATCACTTTATACCAAATTCAAGTATA 60
Query 58 CGTTGAGATATGGCTTTAAAAACATGGAAGCCATTCATAACTGTTGTTTCTCTACAATTT 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTTGAGATATGGCTTTAAAAACATGGAAGCCATTCATAACTGTTGTTTCTCTACAATTC 120
Query 118 GGATATGCTGGATTGTCGATCATAGCGAAATTCGCACTGAACCAAGGCATGAGTCCTCAC 177
|||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 121 GGATATGCTGGACTGTCGATCATAGCGAAATTTGCACTGAACCAAGGCATGAGCCCTCAC 180
Query 178 GTTCTAGCGT-CGTATCGCCATATCGTCGCTACAATTTTCATTGCTCCATTTGCCTATTT 236
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTCTAGC-TGCATATCGCCATATCGTCGCTACAATTTTCATTGCTCCATTTGCCTATTT 239
Query 237 CTTGGATAGAAAAATACGGCCGAAGATGACGCTATCCATCTTCTTCAAGATATTGTTGCT 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 240 CTTGGATAGAAAAATACGGCCGAAGATGACGCTACCCATCTTCTTCAAGATATTGCTGCT 299
Query 297 TGGGTTATTGGAACCAACAATTGATCAGAACTTATACTACACTGGTATGAAGTACACTTC 356
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 TGGGTTATTGGAACCAACAATTGACCAGAACTTATACTACACTGGTATGAAGTACACTTC 359
Query 357 CGCCACTTTCACAGCTGCAATGACAAATGTTCTTCCTGCCTTTGCCTTTATTATGGCATG 416
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 360 CGCCACTTTCACAGCTGCAATGACCAATGTTCTTCCTGCCTTTGCCTTTATCATGGCATG 419
Query 417 GATCTTTAGACTTGAGAAGGTTAACGTCAAGAAAATACACAGCCAAGCCAAGATTCTAGG 476
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATATTTAGACTTGAGAAGGTTAACGTCAAGAAAATACACAGCCAAGCCAAGATTCTAGG 479
Query 477 AACAATTGTGACAGTTGGTGGAGCAATGCTTATGACTGTTGTGAAAGGACCTTTAATTCC 536
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 GACAGTTGTGACAGTTGGTGGAGCAATGCTTATGACTCTTGTGAAAGGACCTTTAATTCC 539
Query 537 TTTGCCTTGGGCTAATCCTCACGACATTCATCAAGACTCATCCAATACCGGAGTCAAACA 596
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 540 TTTGCCTTGGGCTAATCCTCACGACATTCATCAAGACCCATCCAATACCGGAGTCCAACA 599
Query 597 AGACCTAACCAAAGGCGCAAGCCTCATCGCTATCGGTTGTATCTGCTGGGCCGGTTTTAT 656
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGACCTAACTAAAGGCGCAAGCCTCATCGCTATCGGTTGTATCTGCTGGGCCGGTTTTAT 659
Query 657 CAATCTCCAAGCGATCACGCTTAAGTCGTACCCTGTAGAGCTATCCTTGACAGCTTACAT 716
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 660 CAATCTCCAAGCAATCACGCTTAAGTCCTACCCGGTAGAGCTATCCTTGACAGCTTACAT 719
Query 717 ATGTTTTTTGGGGTCTATTGAAAGCACTATTGTGGCACTTTTTATTGAAAGAGGAAATCC 776
||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 ATGCTTCATGGGGTCTATTGAAAGCACTATTGTGGCACTTTTTATTGAAAGGGGAAATCC 779
Query 777 ATCTGCGTGGGCCATCCACTTGGATTCCAAATTACTAGCTGCTGTTTATGGTGGAGTCAT 836
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 780 TTCTGCTTGGGCCATCCAATTGGATTCCAAATTACTAGCTGCTGTTTATGGTGGGGTGAT 839
Query 837 ATGTTCAGGGATTGGTTACTACGTTCAAGGAGTGATAATGAAAACTCGTGGACCCGTGTT 896
|||||||||||||||||| |||||||||||||| || ||||||||||| ||||| |||||
Sbjct 840 ATGTTCAGGGATTGGTTATTACGTTCAAGGAGTAATTATGAAAACTCGAGGACCGGTGTT 899
Query 897 TGTTACTGCCTTCAATCCATTGAGCATGGTCATTGTTGCGATCTTGGGGTCTATAATTCT 956
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 900 TGTGACTGCCTTCAATCCATTGAGCATGGTCATAGTTGCCATCTTGGGGTCTATAATTCT 959
Query 957 TGCTGAGGTTATGTTCCTTGGAAGGATTCTTGGAGCAATAGTGATAGTTCTTGGACTCTA 1016
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 960 TGCTGAGGTTATGTTCCTTGGGAGGATTCTTGGAGCGATAGTGATAGTTCTTGGACTCTA 1019
Query 1017 TTCGGTTTTGTGGGGAAAAAGCAAAGACGAACCATCTTCATCATTTTCAGACATGGACAA 1076
||| ||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||
Sbjct 1020 TTCAGTTTTGTGGGGCAAAAGTAAAGACGAACCATCTTCATCATTTTCCGACACGGACAA 1079
Query 1077 GGAGCTACCACTTAGTACACCACAAATTGTG-C--TCCCATCAAAAGCAAATGCAAAAAT 1133
||| || ||||||||||| |||||||||||| | ||||||| |||||||||||||||||
Sbjct 1080 GGAACTCCCACTTAGTACTCCACAAATTGTGACACTCCCATCGAAAGCAAATGCAAAAAT 1139
Query 1134 GGACACAAATGATGCAAGTGTTGTGATCTCGAGGCCTAACACCAATGAATCAGTCTAAAA 1193
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GGATACACATGATGCAAGTGTTGTGATCTCGAGGCCTAACACCAATGAATCAGTCTAAAT 1199
Query 1194 TAAAGAAAAGACTAACGGCGATTATTAAAATATAATAAGAGAAAACAATGAGTGTCCGAT 1253
|||| |||| |||||||||||| || ||||||||||||||||||||||||||| ||| |
Sbjct 1200 TAAACAAAAAACTAACGGCGATAATAAAAATATAATAAGAGAAAACAATGAGT--CCGGT 1257
Query 1254 TTCTAAACACCGGATCG-ATCGTTGCTTATTGGTAGAGTGTTATTGTAATGCTAATTTTG 1312
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTCTAAACACCG---CGGATCGTTGCTTATTGGTAGAGTGTTATTGTAATGCTAATTTTG 1314
Query 1313 GCTTTGTTAAATTTTGTATCCGGCTACAATATATGAAATGTTTTGCACTACTAAAAGTAC 1372
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1315 GCTTTGTTAAATTTTGTATCCGGCTATAATATATGAAATGTTTTGCACTACTTAAAGTAC 1374
Query 1373 CTTT-ACTTAAAATTATATAGTGTTTTGAGTTCTT 1406
|||| |||||||||||| | |||||||||||||||
Sbjct 1375 CTTTTACTTAAAATTATCTGGTGTTTTGAGTTCTT 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52564538100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5