BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39510.1 Length=1406 Score E Sequences producing significant alignments: (Bits) Value Ahg482973 jgi|Araly1|482973|fgenesh2_kg.4__2033__AT2G39510.1 2156 0.0 > Ahg482973 jgi|Araly1|482973|fgenesh2_kg.4__2033__AT2G39510.1 Length=1409 Score = 2156 bits (1167), Expect = 0.0 Identities = 1335/1415 (94%), Gaps = 15/1415 (1%) Strand=Plus/Plus Query 1 ATCAGCTCTTTCTTACATCATATTCCAA--TC-TATCACTTTATAACAAATTAAAGTCTA 57 |||||||||||||||||||||||| ||| || ||||||||||| |||||| |||| || Sbjct 1 ATCAGCTCTTTCTTACATCATATTGCAATTTCACATCACTTTATACCAAATTCAAGTATA 60 Query 58 CGTTGAGATATGGCTTTAAAAACATGGAAGCCATTCATAACTGTTGTTTCTCTACAATTT 117 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGTTGAGATATGGCTTTAAAAACATGGAAGCCATTCATAACTGTTGTTTCTCTACAATTC 120 Query 118 GGATATGCTGGATTGTCGATCATAGCGAAATTCGCACTGAACCAAGGCATGAGTCCTCAC 177 |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 121 GGATATGCTGGACTGTCGATCATAGCGAAATTTGCACTGAACCAAGGCATGAGCCCTCAC 180 Query 178 GTTCTAGCGT-CGTATCGCCATATCGTCGCTACAATTTTCATTGCTCCATTTGCCTATTT 236 |||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GTTCTAGC-TGCATATCGCCATATCGTCGCTACAATTTTCATTGCTCCATTTGCCTATTT 239 Query 237 CTTGGATAGAAAAATACGGCCGAAGATGACGCTATCCATCTTCTTCAAGATATTGTTGCT 296 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 240 CTTGGATAGAAAAATACGGCCGAAGATGACGCTACCCATCTTCTTCAAGATATTGCTGCT 299 Query 297 TGGGTTATTGGAACCAACAATTGATCAGAACTTATACTACACTGGTATGAAGTACACTTC 356 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 300 TGGGTTATTGGAACCAACAATTGACCAGAACTTATACTACACTGGTATGAAGTACACTTC 359 Query 357 CGCCACTTTCACAGCTGCAATGACAAATGTTCTTCCTGCCTTTGCCTTTATTATGGCATG 416 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 360 CGCCACTTTCACAGCTGCAATGACCAATGTTCTTCCTGCCTTTGCCTTTATCATGGCATG 419 Query 417 GATCTTTAGACTTGAGAAGGTTAACGTCAAGAAAATACACAGCCAAGCCAAGATTCTAGG 476 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GATATTTAGACTTGAGAAGGTTAACGTCAAGAAAATACACAGCCAAGCCAAGATTCTAGG 479 Query 477 AACAATTGTGACAGTTGGTGGAGCAATGCTTATGACTGTTGTGAAAGGACCTTTAATTCC 536 ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 480 GACAGTTGTGACAGTTGGTGGAGCAATGCTTATGACTCTTGTGAAAGGACCTTTAATTCC 539 Query 537 TTTGCCTTGGGCTAATCCTCACGACATTCATCAAGACTCATCCAATACCGGAGTCAAACA 596 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 540 TTTGCCTTGGGCTAATCCTCACGACATTCATCAAGACCCATCCAATACCGGAGTCCAACA 599 Query 597 AGACCTAACCAAAGGCGCAAGCCTCATCGCTATCGGTTGTATCTGCTGGGCCGGTTTTAT 656 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 AGACCTAACTAAAGGCGCAAGCCTCATCGCTATCGGTTGTATCTGCTGGGCCGGTTTTAT 659 Query 657 CAATCTCCAAGCGATCACGCTTAAGTCGTACCCTGTAGAGCTATCCTTGACAGCTTACAT 716 |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 660 CAATCTCCAAGCAATCACGCTTAAGTCCTACCCGGTAGAGCTATCCTTGACAGCTTACAT 719 Query 717 ATGTTTTTTGGGGTCTATTGAAAGCACTATTGTGGCACTTTTTATTGAAAGAGGAAATCC 776 ||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 720 ATGCTTCATGGGGTCTATTGAAAGCACTATTGTGGCACTTTTTATTGAAAGGGGAAATCC 779 Query 777 ATCTGCGTGGGCCATCCACTTGGATTCCAAATTACTAGCTGCTGTTTATGGTGGAGTCAT 836 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || || Sbjct 780 TTCTGCTTGGGCCATCCAATTGGATTCCAAATTACTAGCTGCTGTTTATGGTGGGGTGAT 839 Query 837 ATGTTCAGGGATTGGTTACTACGTTCAAGGAGTGATAATGAAAACTCGTGGACCCGTGTT 896 |||||||||||||||||| |||||||||||||| || ||||||||||| ||||| ||||| Sbjct 840 ATGTTCAGGGATTGGTTATTACGTTCAAGGAGTAATTATGAAAACTCGAGGACCGGTGTT 899 Query 897 TGTTACTGCCTTCAATCCATTGAGCATGGTCATTGTTGCGATCTTGGGGTCTATAATTCT 956 ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 900 TGTGACTGCCTTCAATCCATTGAGCATGGTCATAGTTGCCATCTTGGGGTCTATAATTCT 959 Query 957 TGCTGAGGTTATGTTCCTTGGAAGGATTCTTGGAGCAATAGTGATAGTTCTTGGACTCTA 1016 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 960 TGCTGAGGTTATGTTCCTTGGGAGGATTCTTGGAGCGATAGTGATAGTTCTTGGACTCTA 1019 Query 1017 TTCGGTTTTGTGGGGAAAAAGCAAAGACGAACCATCTTCATCATTTTCAGACATGGACAA 1076 ||| ||||||||||| ||||| |||||||||||||||||||||||||| |||| |||||| Sbjct 1020 TTCAGTTTTGTGGGGCAAAAGTAAAGACGAACCATCTTCATCATTTTCCGACACGGACAA 1079 Query 1077 GGAGCTACCACTTAGTACACCACAAATTGTG-C--TCCCATCAAAAGCAAATGCAAAAAT 1133 ||| || ||||||||||| |||||||||||| | ||||||| ||||||||||||||||| Sbjct 1080 GGAACTCCCACTTAGTACTCCACAAATTGTGACACTCCCATCGAAAGCAAATGCAAAAAT 1139 Query 1134 GGACACAAATGATGCAAGTGTTGTGATCTCGAGGCCTAACACCAATGAATCAGTCTAAAA 1193 ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 GGATACACATGATGCAAGTGTTGTGATCTCGAGGCCTAACACCAATGAATCAGTCTAAAT 1199 Query 1194 TAAAGAAAAGACTAACGGCGATTATTAAAATATAATAAGAGAAAACAATGAGTGTCCGAT 1253 |||| |||| |||||||||||| || ||||||||||||||||||||||||||| ||| | Sbjct 1200 TAAACAAAAAACTAACGGCGATAATAAAAATATAATAAGAGAAAACAATGAGT--CCGGT 1257 Query 1254 TTCTAAACACCGGATCG-ATCGTTGCTTATTGGTAGAGTGTTATTGTAATGCTAATTTTG 1312 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 TTCTAAACACCG---CGGATCGTTGCTTATTGGTAGAGTGTTATTGTAATGCTAATTTTG 1314 Query 1313 GCTTTGTTAAATTTTGTATCCGGCTACAATATATGAAATGTTTTGCACTACTAAAAGTAC 1372 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 1315 GCTTTGTTAAATTTTGTATCCGGCTATAATATATGAAATGTTTTGCACTACTTAAAGTAC 1374 Query 1373 CTTT-ACTTAAAATTATATAGTGTTTTGAGTTCTT 1406 |||| |||||||||||| | ||||||||||||||| Sbjct 1375 CTTTTACTTAAAATTATCTGGTGTTTTGAGTTCTT 1409 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52564538100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5