BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39518.1
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934717 jgi|Araly1|934717|scaffold_402705.1 804 0.0
Ahg934718 jgi|Araly1|934718|scaffold_402706.1 368 3e-101
> Ahg934717 jgi|Araly1|934717|scaffold_402705.1
Length=566
Score = 804 bits (435), Expect = 0.0
Identities = 527/571 (92%), Gaps = 7/571 (1%)
Strand=Plus/Plus
Query 38 TTCAACGTACTGATCAATTTTATGGCACCACCACCTCCTTCGCCACCAGCTGTTTCGTTG 97
||||||||||| ||||||| |||||||||||||||||| ||||||||| | ||||| |||
Sbjct 1 TTCAACGTACTTATCAATTATATGGCACCACCACCTCCATCGCCACCACCAGTTTCCTTG 60
Query 98 AAGGTTTTACTCCTT-TTACTTAGGGTTTTAACAGGAGTTTTCCTTGTTATAGCGCTAAT 156
||||| | ||||||| || |||||||| |||||||| |||||||| ||||| ||||| ||
Sbjct 61 AAGGTATCACTCCTTCTT-CTTAGGGTATTAACAGGGGTTTTCCTCGTTATTGCGCTCAT 119
Query 157 CATCCTCAGCACCAACAGTGTCACCATTGTATCTCAAGGAAGCGCATTGAAATTTCATTT 216
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 CATCCTCAGCACCAACAGTGTCACCATTGTATCTCAAGGAAGCGCATTAAAATTTCATTT 179
Query 217 CAAAGATGTTTATGCTTATAGATATATGCTTTCAGCTGCCGTCATTGGACTGGTTTACGC 276
||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 180 CAAAGATGTTTATGCCTATAGATACATGCTTTCAGCTGCCGTCATCGGACTACTTTACGC 239
Query 277 CGTCATACAACTGTTCTTCACAATCTCCGAATTCGCCACCGGAGTGAAAAACCCTTTTAA 336
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 240 CGTCATACAACTGTTCTTCACAATCTCCGAATTCGCCACCGGAATGAAAAATCCTTTTAA 299
Query 337 TTATCAACTTGATTTTTACGGTGACAAGTTAATATCATACCTAGTGGCGACGGGTTCTGC 396
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 300 TTATCAACTCGATTTTTACGGTGACAAGTTAATATCATATCTAGTGGCGACGGGTTCGGC 359
Query 397 AGCTGGATTTGGAGTGACCAAAGATTTGAAAGACACATTTCTAGCATTAGTCGCATTAGA 456
||||||||||||||||| ||| ||||||||||| ||||| |||||||||| ||||| ||
Sbjct 360 AGCTGGATTTGGAGTGAGCAAGGATTTGAAAGATGCATTTATAGCATTAGTGGCATTGGA 419
Query 457 TTCGACTGATCCAGTGGATAAGTTCTTTAGCAAAGGCTACGCATCGGCCAGTCTTCTTCT 516
|||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct 420 TTCGACTGATCCTGTGGATAGGTTCTTTAGCAGAGGATACGCATCGGCCAGTCTTCTTCT 479
Query 517 CTTTGCTTTCATCTGTCTTGCTGTTTTATCTGTTTTCTCATCCTTTGCCATGGCCAAACG 576
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 CTTTTCTTTCATCTGTCTTGCTGTTTTATCTGTTTTCTCATCCTTTGCCATTGCCAAACG 539
Query 577 AAATTAA-TTCTAGTCTGATCATCATTATAC 606
||||||| || |||||| || |||||||||
Sbjct 540 AAATTAACTT-TAGTCT--TC-TCATTATAC 566
> Ahg934718 jgi|Araly1|934718|scaffold_402706.1
Length=579
Score = 368 bits (199), Expect = 3e-101
Identities = 424/531 (80%), Gaps = 22/531 (4%)
Strand=Plus/Plus
Query 58 TATGGCACCACCACCTCCTTCGCCACCAG-CTGTTTCGTTGAAGG-TTTTACTCCTTTTA 115
|||||| ||||||||||| || || || | | ||| ||||| ||| ||||||| |
Sbjct 20 TATGGCTCCACCACCTCCGTCACCGCC-GTCCGTTACGTTG-AGGACAGTACTCCTCCTC 77
Query 116 CTTAGGGTTTTAACAGG-AGTTTTCCTTGTTATAGCGCTAATCATCCTCAGCACCAACAG 174
||||||||||| || || | |||||| || ||| || | || || ||||||||||||
Sbjct 78 CTTAGGGTTTTGAC-GGCTGCTTTCCTCGTCATAACGGTGGTCCTCATCAGCACCAACAC 136
Query 175 TGTCAC-CATTGTA-TCTCAAGGA-AGCGCATTGAAATTTCATTTCAAAGATGTTTATGC 231
||||| | | | | ||||||| | | | | | ||| | ||||| || ||||| |||||
Sbjct 137 CGTCACTC-TCGAAGTCTCAAGCACATC-TA-TAAAAATGCATTTTAACGATGTCTATGC 193
Query 232 TTATAGATATATGCTTTCAGCTGCCGTCATTGGACTGGTTTACGCCGTCATACAACTGTT 291
|||||| || ||| | || ||||||| ||| ||||| |||||||||| ||||||||||
Sbjct 194 TTATAGGTACATGATGTCCGCTGCCGCCATCGGACTCCTTTACGCCGTTGTACAACTGTT 253
Query 292 CTTCACAATCTCCGAATTCGCCACCGG-AGTGAAAAACCCTTTTAATTATCAACTT-GAT 349
||| ||||||||| ||||||||| ||| | | | | | ||| ||| ||||| | || ||
Sbjct 254 CTTAACAATCTCCCAATTCGCCA-CGGAAATTACACATCCTCTTAGTTATC-AGTTCAAT 311
Query 350 TTTTACGGTGACAAGTTAATATCATACCTAGTGGCGACGGGTTCTGCAGCTGGATTTGGA 409
|| |||||||| ||| |||||||||| || | ||||||||||| || ||||||||||||
Sbjct 312 TTCTACGGTGATAAGATAATATCATATATACTTGCGACGGGTTCGGCGGCTGGATTTGGA 371
Query 410 GTGACCAAAGATTTGAAAGACACATTTCTAGCATTAG-TCGCA-TTAGATTCGACTGATC 467
|||| |||||||||||||||||||| |||||||| | | | | || ||||| || ||||
Sbjct 372 GTGAGCAAAGATTTGAAAGACACATACCTAGCATT-GATAGAACTT-GATTCAACAGATC 429
Query 468 CAGTGGATAAGTTCTTTAGCAAAGGCTACGCATCGGCCAGTCTTCTTCTCTTTGCTTTCA 527
| ||||||| |||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 430 CGGTGGATAGGTTCTTCAGTAAAGGATACGCATCGGCCAGTCTTCTTCTCTTTGCTTTCA 489
Query 528 TCTGTCTTGCTGTTTTATCTGTTTTCTCATCCTTTGC-CATGGCCAAACGA 577
||| |||||| |||||||| |||||||||||| |||| | | ||||||||
Sbjct 490 TCTCTCTTGCGGTTTTATCCGTTTTCTCATCCCTTGCTCTTT-CCAAACGA 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27143516904
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5