BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39518.1 Length=737 Score E Sequences producing significant alignments: (Bits) Value Ahg934717 jgi|Araly1|934717|scaffold_402705.1 804 0.0 Ahg934718 jgi|Araly1|934718|scaffold_402706.1 368 3e-101 > Ahg934717 jgi|Araly1|934717|scaffold_402705.1 Length=566 Score = 804 bits (435), Expect = 0.0 Identities = 527/571 (92%), Gaps = 7/571 (1%) Strand=Plus/Plus Query 38 TTCAACGTACTGATCAATTTTATGGCACCACCACCTCCTTCGCCACCAGCTGTTTCGTTG 97 ||||||||||| ||||||| |||||||||||||||||| ||||||||| | ||||| ||| Sbjct 1 TTCAACGTACTTATCAATTATATGGCACCACCACCTCCATCGCCACCACCAGTTTCCTTG 60 Query 98 AAGGTTTTACTCCTT-TTACTTAGGGTTTTAACAGGAGTTTTCCTTGTTATAGCGCTAAT 156 ||||| | ||||||| || |||||||| |||||||| |||||||| ||||| ||||| || Sbjct 61 AAGGTATCACTCCTTCTT-CTTAGGGTATTAACAGGGGTTTTCCTCGTTATTGCGCTCAT 119 Query 157 CATCCTCAGCACCAACAGTGTCACCATTGTATCTCAAGGAAGCGCATTGAAATTTCATTT 216 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 120 CATCCTCAGCACCAACAGTGTCACCATTGTATCTCAAGGAAGCGCATTAAAATTTCATTT 179 Query 217 CAAAGATGTTTATGCTTATAGATATATGCTTTCAGCTGCCGTCATTGGACTGGTTTACGC 276 ||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||| Sbjct 180 CAAAGATGTTTATGCCTATAGATACATGCTTTCAGCTGCCGTCATCGGACTACTTTACGC 239 Query 277 CGTCATACAACTGTTCTTCACAATCTCCGAATTCGCCACCGGAGTGAAAAACCCTTTTAA 336 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 240 CGTCATACAACTGTTCTTCACAATCTCCGAATTCGCCACCGGAATGAAAAATCCTTTTAA 299 Query 337 TTATCAACTTGATTTTTACGGTGACAAGTTAATATCATACCTAGTGGCGACGGGTTCTGC 396 ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 300 TTATCAACTCGATTTTTACGGTGACAAGTTAATATCATATCTAGTGGCGACGGGTTCGGC 359 Query 397 AGCTGGATTTGGAGTGACCAAAGATTTGAAAGACACATTTCTAGCATTAGTCGCATTAGA 456 ||||||||||||||||| ||| ||||||||||| ||||| |||||||||| ||||| || Sbjct 360 AGCTGGATTTGGAGTGAGCAAGGATTTGAAAGATGCATTTATAGCATTAGTGGCATTGGA 419 Query 457 TTCGACTGATCCAGTGGATAAGTTCTTTAGCAAAGGCTACGCATCGGCCAGTCTTCTTCT 516 |||||||||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||| Sbjct 420 TTCGACTGATCCTGTGGATAGGTTCTTTAGCAGAGGATACGCATCGGCCAGTCTTCTTCT 479 Query 517 CTTTGCTTTCATCTGTCTTGCTGTTTTATCTGTTTTCTCATCCTTTGCCATGGCCAAACG 576 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 480 CTTTTCTTTCATCTGTCTTGCTGTTTTATCTGTTTTCTCATCCTTTGCCATTGCCAAACG 539 Query 577 AAATTAA-TTCTAGTCTGATCATCATTATAC 606 ||||||| || |||||| || ||||||||| Sbjct 540 AAATTAACTT-TAGTCT--TC-TCATTATAC 566 > Ahg934718 jgi|Araly1|934718|scaffold_402706.1 Length=579 Score = 368 bits (199), Expect = 3e-101 Identities = 424/531 (80%), Gaps = 22/531 (4%) Strand=Plus/Plus Query 58 TATGGCACCACCACCTCCTTCGCCACCAG-CTGTTTCGTTGAAGG-TTTTACTCCTTTTA 115 |||||| ||||||||||| || || || | | ||| ||||| ||| ||||||| | Sbjct 20 TATGGCTCCACCACCTCCGTCACCGCC-GTCCGTTACGTTG-AGGACAGTACTCCTCCTC 77 Query 116 CTTAGGGTTTTAACAGG-AGTTTTCCTTGTTATAGCGCTAATCATCCTCAGCACCAACAG 174 ||||||||||| || || | |||||| || ||| || | || || |||||||||||| Sbjct 78 CTTAGGGTTTTGAC-GGCTGCTTTCCTCGTCATAACGGTGGTCCTCATCAGCACCAACAC 136 Query 175 TGTCAC-CATTGTA-TCTCAAGGA-AGCGCATTGAAATTTCATTTCAAAGATGTTTATGC 231 ||||| | | | | ||||||| | | | | | ||| | ||||| || ||||| ||||| Sbjct 137 CGTCACTC-TCGAAGTCTCAAGCACATC-TA-TAAAAATGCATTTTAACGATGTCTATGC 193 Query 232 TTATAGATATATGCTTTCAGCTGCCGTCATTGGACTGGTTTACGCCGTCATACAACTGTT 291 |||||| || ||| | || ||||||| ||| ||||| |||||||||| |||||||||| Sbjct 194 TTATAGGTACATGATGTCCGCTGCCGCCATCGGACTCCTTTACGCCGTTGTACAACTGTT 253 Query 292 CTTCACAATCTCCGAATTCGCCACCGG-AGTGAAAAACCCTTTTAATTATCAACTT-GAT 349 ||| ||||||||| ||||||||| ||| | | | | | ||| ||| ||||| | || || Sbjct 254 CTTAACAATCTCCCAATTCGCCA-CGGAAATTACACATCCTCTTAGTTATC-AGTTCAAT 311 Query 350 TTTTACGGTGACAAGTTAATATCATACCTAGTGGCGACGGGTTCTGCAGCTGGATTTGGA 409 || |||||||| ||| |||||||||| || | ||||||||||| || |||||||||||| Sbjct 312 TTCTACGGTGATAAGATAATATCATATATACTTGCGACGGGTTCGGCGGCTGGATTTGGA 371 Query 410 GTGACCAAAGATTTGAAAGACACATTTCTAGCATTAG-TCGCA-TTAGATTCGACTGATC 467 |||| |||||||||||||||||||| |||||||| | | | | || ||||| || |||| Sbjct 372 GTGAGCAAAGATTTGAAAGACACATACCTAGCATT-GATAGAACTT-GATTCAACAGATC 429 Query 468 CAGTGGATAAGTTCTTTAGCAAAGGCTACGCATCGGCCAGTCTTCTTCTCTTTGCTTTCA 527 | ||||||| |||||| || ||||| |||||||||||||||||||||||||||||||||| Sbjct 430 CGGTGGATAGGTTCTTCAGTAAAGGATACGCATCGGCCAGTCTTCTTCTCTTTGCTTTCA 489 Query 528 TCTGTCTTGCTGTTTTATCTGTTTTCTCATCCTTTGC-CATGGCCAAACGA 577 ||| |||||| |||||||| |||||||||||| |||| | | |||||||| Sbjct 490 TCTCTCTTGCGGTTTTATCCGTTTTCTCATCCCTTGCTCTTT-CCAAACGA 539 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27143516904 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5