BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39540.1
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471179 jgi|Araly1|471179|fgenesh2_kg.1__1133__AT1G10588.1 368 1e-101
Ahg484630 jgi|Araly1|484630|fgenesh2_kg.5__622__AT1G10588.2 359 6e-99
Ahg482976 jgi|Araly1|482976|fgenesh2_kg.4__2036__AT2G39540.1 289 8e-78
Ahg919845 jgi|Araly1|919845|scaffold_101126.1 200 4e-51
> Ahg471179 jgi|Araly1|471179|fgenesh2_kg.1__1133__AT1G10588.1
Length=526
Score = 368 bits (199), Expect = 1e-101
Identities = 245/266 (92%), Gaps = 8/266 (3%)
Strand=Plus/Plus
Query 6 GCTCGTGGTTGTACAATTCTTCATAATCTCTCTTCTCCTCACATCTTCATTTTCTGTACT 65
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 17 GCTCGTGGCTGTACAATTCTTCATAATCTCTCTTCTCCTCACATCTTCATTTTTTGTACT 76
Query 66 TTCAAGTGCTGATTCGT---CATGCGGTGGAAAGTGCAATGTGAGATGCTCAAAGGCAGG 122
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 77 TTCAAGCGCTGATTCGTCAGCATGCGGTGGAAAGTGCAATGTGAGATGCTCAAAGGCA-G 135
Query 123 A-C--A-ACATGAAGAATGCCTCAAGTACTGCAATATATGTTGCCAGAAGTGTAATTGTG 178
| | | |||||| || ||||| || |||||||||||||||||||| ||||||||||||
Sbjct 136 ATCGAACACATGAGGAGTGCCTTGAGGACTGCAATATATGTTGCCAGCAGTGTAATTGTG 195
Query 179 TTCCTTCGGGAACTTTTGGACACAAAGATGAATGTCCTTGCTACCGTGATATGAAAAACT 238
|||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 196 TTCCTTCGGGTACTTATGGAAACAAAGATGAATGTCCTTGCTACCGTGATATGAAAAACT 255
Query 239 CCAAAGGTGGATCCAAGTGTCCTTGA 264
||||||| ||||||||||||||||||
Sbjct 256 CCAAAGGCGGATCCAAGTGTCCTTGA 281
> Ahg484630 jgi|Araly1|484630|fgenesh2_kg.5__622__AT1G10588.2
Length=514
Score = 359 bits (194), Expect = 6e-99
Identities = 240/262 (92%), Gaps = 3/262 (1%)
Strand=Plus/Plus
Query 6 GCTCGTGGTTGTACAATTCTTCATAATCTCTCTTCTCCTCACATCTTCATTTTCTGTACT 65
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 149 GCTCGTGGTTGTACAATTCTTCATAATCTCTCTTCTACTCACATCATCATTTTTTGTACT 208
Query 66 TTCAAGTGCTGATTCGTCATGCGGTGGAAAGTGCAATGTGAGATGCTCAAAGGC--A-GG 122
|||||| |||||||| |||||||||||||||||| ||||||||||||||||||| | |
Sbjct 209 TTCAAGCGCTGATTCATCATGCGGTGGAAAGTGCGATGTGAGATGCTCAAAGGCTGATCG 268
Query 123 ACAACATGAAGAATGCCTCAAGTACTGCAATATATGTTGCCAGAAGTGTAATTGTGTTCC 182
||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 269 ACAACATGAGGAGTGCCTTAAGGACTGCAATATATGTTGCCAGAAGTGTAATTGTGTTCC 328
Query 183 TTCGGGAACTTTTGGACACAAAGATGAATGTCCTTGCTACCGTGATATGAAAAACTCCAA 242
|||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 329 TTCGGGCACTTATGGAAACAAAGATGAATGTCCTTGCTACCGTGATTTGAAAAACTCTAA 388
Query 243 AGGTGGATCCAAGTGTCCTTGA 264
|| | ||||||||||||||||
Sbjct 389 GGGCGAATCCAAGTGTCCTTGA 410
> Ahg482976 jgi|Araly1|482976|fgenesh2_kg.4__2036__AT2G39540.1
Length=246
Score = 289 bits (156), Expect = 8e-78
Identities = 217/244 (89%), Gaps = 14/244 (6%)
Strand=Plus/Plus
Query 34 TCTCTTCTCCTCACATCTTCATTTTCTGTACTTTCAAGTGCTGATT-CG-T-CATGCGGT 90
|||||||||||| ||||| |||||| ||||||||| || ||||||| | | ||||||||
Sbjct 4 TCTCTTCTCCTCGCATCTACATTTTTTGTACTTTCTAGCGCTGATTGTGTTACATGCGGT 63
Query 91 GGAAAGTGCAATGTGAGATGCTCAAAGGCAGGACAACATGAAGAATGCCTCAAGTACTGC 150
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 64 GGAAAGTGCAATGTGAGATGCTCAAAGGCAGGACAACATGAAGAGTGCCTCAAGTACTAC 123
Query 151 AATATATGTTGCCAGAAGTGTAATTGT----G----T-TCCTTCGGGA-ACTTTTGGACA 200
|||||||||||||| |||||||||||| | | |||||||| | ||||||||| |
Sbjct 124 AATATATGTTGCCATAAGTGTAATTGTACACGGCACTGTCCTTCGG-ACACTTTTGGAAA 182
Query 201 CAAAGATGAATGTCCTTGCTACCGTGATATGAAAAACTCCAAAGGTGGATCCAAGTGTCC 260
|||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 183 CAAAGATGAATGCCCTTGCTACCGTGATATGAAAAACTCCAAAGGCGGATCAAAGTGTCC 242
Query 261 TTGA 264
||||
Sbjct 243 TTGA 246
> Ahg919845 jgi|Araly1|919845|scaffold_101126.1
Length=199
Score = 200 bits (108), Expect = 4e-51
Identities = 154/176 (88%), Gaps = 4/176 (2%)
Strand=Plus/Minus
Query 92 GAAAGTGCAATGTGAGATGCTCAAAGGCAGGACAACATGAAGAATGCCTCAAGTACTGCA 151
||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 199 GAAAGTGAAATGTGAGATGCTCAAAGGCAGGACAACATGAAGAGTGCCTCAAGCACTGCA 140
Query 152 ATATATGTTGCCAGAAGTGTAATTGTGTTC-CTTCGGGAACTTTTGGACACAAAGATGAA 210
| ||||||||| ||||| |||||||||||| || || | | | ||| |||||||||||
Sbjct 139 ACATATGTTGCGAGAAGAGTAATTGTGTTCTCTGAGGCA-CATACGGAAACAAAGATGAA 81
Query 211 TGTCCTTGCTACCGTGATATGAAAAACTCCAAAGGTGG--ATCCAAGTGTCCTTGA 264
|||| ||| ||||| |||| ||||||||||||||| || ||||||||||||||||
Sbjct 80 TGTCTTTGTTACCGCGATAGGAAAAACTCCAAAGGCGGGGATCCAAGTGTCCTTGA 25
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9203370901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5