BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39550.1
Length=1331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345735 jgi|Araly1|345735|fgenesh1_pg.C_scaffold_4002077 1546 0.0
> Ahg345735 jgi|Araly1|345735|fgenesh1_pg.C_scaffold_4002077
Length=990
Score = 1546 bits (837), Expect = 0.0
Identities = 941/992 (95%), Gaps = 4/992 (0%)
Strand=Plus/Plus
Query 182 ATGTACGAGTTGCTTCCGTACCATTACCAATCTCAGGAGATCAATCGTCTTACACTCGCT 241
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1 ATGTACGAGTTGCTTCCGTACCATTACCAATCTCAGGAGATCAATCGTCTCACTCTTGCT 60
Query 242 CA-TTTCATAATCTCGGGTCTTCATTTTCTCGGCGCAAGAGACCGTGTTGATAAAGATGT 300
|| ||| ||||||||||||||||| ||||||||||||| ||| |||||||| ||||||||
Sbjct 61 CACTTT-ATAATCTCGGGTCTTCACTTTCTCGGCGCAATAGATCGTGTTGACAAAGATGT 119
Query 301 TGTTGCAAAGTGGGTTTTGTCCTTCCAGGCCTTTCCTACTAACAGAGTTTCACTGAAAGA 360
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 120 TGTTGCAAAGTGGGTTTTGTCCTTCCAGGCCCTTCCTAGTAACAGAGTTTCACTGAAAGA 179
Query 361 TGGAGAATTCTATGGTTTCTTTGGTTCAAGGAGTTCTCAGTTTCCCATTGATGAGAATGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGGAGAATTCTATGGTTTCTTTGGTTCAAGGAGTTCTCAGTTTCCCATTGATGAGAATGG 239
Query 421 GGATTTAAAGCACAACGGTAGTCACTTGGCAAGCACTTACTGTGCTTTGGCTATTCTGAA 480
|||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 240 GGATTTAATTCACAACGGTAGTCACTTGGCAAGCACTTACTGTGCCTTGGCCATTCTTAA 299
Query 481 GGTCATTGGACATGATCTCTCGACCATCGACTCAAAATCATTGCTAATTTCCATGATAAA 540
||||||||||||||||||||||| ||||||||| | || | || ||||||||| |||
Sbjct 300 GGTCATTGGACATGATCTCTCGATCATCGACTCTGAGTCGGTACTGTTTTCCATGAAAAA 359
Query 541 CCTTCAACAGGATGATGGAAGCTTCATGCCTATCCATATTGGAGGTGAAACGGATCTTCG 600
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 360 CCTTCAACAGGATGATGGAAGCTTCATGCCTATCCATATTGGCGGAGAAACGGATCTTCG 419
Query 601 ATTTGTATATTGTGCAGCTGCAATCTGTTACATGCTGGATAGTTGGAGTGGAATGGATAA 660
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 420 ATTTGTATATTGTGCAGCTGCAATCTGTTACATGCTGGATAATTGGAGTGGAATGGACAA 479
Query 661 GGAGAGTGCTAAGAACTACATATTAAACTGTCAGTCATATGATGGTGGTTTTGGATTGAT 720
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 480 GGAGAGCGCTAAGAACTACATATTAAACTGTCAGTCATATGATGGTGGCTTTGGGTTGAT 539
Query 721 CCCTGGTTCTGAATCTCATGGTGGTGCCACTTACTGTGCTATTGCATCCCTTCGGTTGAT 780
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCCTGGTTCTGAGTCTCATGGTGGTGCCACTTACTGTGCTATTGCATCCCTTCGGTTGAT 599
Query 781 GGGATACATTGGAGTTGATCTGCTGTCAAATGATTCATCCAGTTCAATAATAGACCCTTC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGGATACATTGGAGTTGATCTGCTGTCAAATGATTCATCCAGTTCAATAATAGACCCTTC 659
Query 841 ATTACTTCTCAACTGGTGCCTACAGAGACAAG-CAAATGATGGTGGGTTTCAAGGTAGGA 899
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 660 ATTACTTCTCAACTGGTGCCTACAGAGACAAGGCAA-TGATGGTGGGTTTCAAGGTAGGA 718
Query 900 CTAACAAGCCAAGTGACACATGCTATGCATTTTGGATTGGAGCTGTCCTTAAACTTATAG 959
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 CTAATAAGCCAAGTGACACATGCTATGCATTTTGGATTGGAGCTGTCCTTAAACTCATAG 778
Query 960 GAGGCGATGCATTGATCGACAAAATGGCTCTGCGCAAATTTTTAATGAGTTGTCAGTCCA 1019
|||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||
Sbjct 779 GAGGCGATGCATTGATTGACAAAATTGCTCTGCGCAAATTTTTACTGAGTTGTCAGTCCA 838
Query 1020 AGTATGGTGGATTCAGTAAATTCCCCGGACAATTACCAGATCTGTATCATTCATACTACG 1079
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 839 AGTATGGTGGATTCAGTAAATTCTCCGGACAATTACCGGATCTGTATCATTCATACTACG 898
Query 1080 GTTACACGGCTTTTAGTCTCTTGGAAGAACAGGGCTTGAGTCCTCTATGTCCTGAGCTAG 1139
||||||||||||| || |||||||| |||| | |||||||||||||||||||||||||||
Sbjct 899 GTTACACGGCTTTCAGCCTCTTGGAGGAACCGAGCTTGAGTCCTCTATGTCCTGAGCTAG 958
Query 1140 GTTTACCTCTTCTTGCAGCCCCGGGAATTTGA 1171
| |||||||||||||||||| |||| ||||||
Sbjct 959 GGTTACCTCTTCTTGCAGCCTCGGGGATTTGA 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49788529602
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5