BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39560.1 Length=1163 Score E Sequences producing significant alignments: (Bits) Value Ahg482977 jgi|Araly1|482977|fgenesh2_kg.4__2037__AT2G39560.1 1478 0.0 > Ahg482977 jgi|Araly1|482977|fgenesh2_kg.4__2037__AT2G39560.1 Length=1070 Score = 1478 bits (800), Expect = 0.0 Identities = 989/1075 (92%), Gaps = 34/1075 (3%) Strand=Plus/Plus Query 99 TTTGGTCGAATCGGATAAAAAGGTCTTCTCTTTGTGTTGGAGT-AACGATGAACAAGAGA 157 |||||||||||| ||||||||||||||||| || ||| || | ||||||| | |||||| Sbjct 20 TTTGGTCGAATCTGATAAAAAGGTCTTCTC-TT-TGTCGG-TTAAACGATGTATAAGAGA 76 Query 158 AGTGAATCTTATCT---AGAAGAAGAAAGATGAGATCTCTGAGCAGTGTGGGACTTGCTC 214 |||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 77 AGTGAATCTTATCTGGAAGAAGAAGAACGATGAGATCTTTGAGCAGTGTGGGACTTGCTC 136 Query 215 TAAGCATAGTCTTTGGTTGCTTGCTATTAGCTCTTCTCGCTGAGCTTTATTACTTGCTTT 274 ||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct 137 TAAGCATAGTCTTTGGTTGTTTGCTATTAGCTCTTCTCGCTGAACTCTATTACTTGCTTT 196 Query 275 GGTGTAAGAAGAGGTCGACGACGAGAAGACCTGATTTTCGAAATGACTATTCTACCCCTG 334 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 197 GGTGTAAGAAGAGGTCGACGACGAGAAGACCTGATTTTCGTAATGACTATTCTACCCCTG 256 Query 335 GAACCAGAGAGCTTCTCTTCATCTTCTGTTGCAGTAGTAGCACAAACCcttcttcttctt 394 |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||| Sbjct 257 GAACCAGAGAGCTTATCTTTATCTTCTGCTGCAGTAGTAGCACAAACCCTTCTTCTTCT- 315 Query 395 ctccttcttcttcctctttctCAAACCCTAAACCCATTGACACTCAACAACAGTGTCCTC 454 | | ||||||||||||||||||| |||||||||||||||| ||||||||||| |||| || Sbjct 316 C-C-TTCTTCTTCCTCTTTCTCAGACCCTAAACCCATTGAAACTCAACAACAATGTCTTC 373 Query 455 TTAATAATGGGTTTGAGAATGTTGGTGGTCCAGGGCTTGTGCCGAGGTTTCTGTTCACAA 514 ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 374 CTAATAATGGTTTTGAGAATGTGGGTGGTCCAGGGCTTGTGCCGAGGTTTCTGTTCACAA 433 Query 515 TCATGGAAGAAACAGTGGAAGAAATGGAATCTGAAGATGTGGTTTCCACAAAAGGAAAGA 574 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 434 TCATGGAGGAAACAGTGGAAGAAATGGAATCTGAAGATGTGGTTTCCACAAAAGGAAAGA 493 Query 575 GTTTGAATGATTTGTTTCTTAATATGGAAAGTGGTGTCATAACTCCTCCATATCTCACTC 634 ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 494 CTTTGAATGATTTGTTTCTTAACATGGAAAGTGGTGCCATAACTCCTCCATATCTCACTC 553 Query 635 CTCGTGCTTCTCCTTCGTTGTTCACGCCTCCTTTAACTCCATTGCTAATGGAGTCTTGTA 694 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 554 CTCGTGCTTCTCCTTCGTTGTTCACGCCTCCTTTAACTCCATTACTAATGGAGTCTTGTA 613 Query 695 ATGGTAGAAAAGAAGAGATCTCGAGTTTGTTTGAGTCATCCTCTGATGCTGAGTTTAATA 754 ||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||| Sbjct 614 ATGGTAGAAAAGAAGAGATGTCGAGTTTCTTCGAGTCATCTTCTGATGCTGAGTTTAATA 673 Query 755 GACTAGTGAGATCATCTCCATTGTCATCATCACATTCACCGTCATCTTCGCCATTGTCGA 814 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 674 GACTAGTGAGATCATCTCCACTGTCATCATCACATTCACCATCATCTTCGCCATTGTCGA 733 Query 815 GATTCAAGTTCTTAAGGGATGCAGAGGAGAAGCTTTACAAGAAGAAAGTGATGGAGATTG 874 |||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||| Sbjct 734 GATTCAAGTTCTTAAGAGACGCAGAAGAGAAGCTCTACAAGAAGAAAGTGATGGAGATTG 793 Query 875 CAGAAGCTTAGTAAATTCAAGTGGTAAAAGTTTGGTAAAACACAGTTCAAGAATCGGATT 934 |||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 794 CAGAAGCTGAGTAAATTCAAGTGCTAAAA-TT-GGTAAAACACAGTTCAAGAATCGGATT 851 Query 935 TGGT-AA-T-CAAGATTCAAGAAGATGAGGTCTAGGAGAGAAAAACCAGGAATGATTAAT 991 || | || | ||| | |||||||||||||||| ||||| ||| ||||| ||||||||| Sbjct 852 TGTTCAAGTTCAA--T-CAAGAAGATGAGGTCTTGGAGA-AAA--CCAGGGATGATTAAT 905 Query 992 AGAATTAAACCGGTTTTT--AGTCTGATTTAAT-TGTCCTTAATCATCAACAtttttttt 1048 |||||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||| Sbjct 906 AGAATTAAACCGGTTTTTTTAGTCTGATTTAATCT-TCCTTAATCGTCAACATTTTTTT- 963 Query 1049 GGTCTAGCTCGTCATCGGATTAAACCGGTTGTAAATTTTCGGTGGATAGAGAATTTGTTA 1108 ||||| |||| | |||||||||||||| |||||||||||||||||| | |||| Sbjct 964 GGTCTGGCTCTTAATCGGATTAAACCGACTGTAAATTTTCGGTGGAT------T--GTTA 1015 Query 1109 GCCAAATTTGTGGATTTTGAGTCAAATCACGCGAATAAAGATAGGCTTTGGATTC 1163 |||||||||||| ||||||| ||||||| |||||||||||| |||||||||||| Sbjct 1016 GCCAAATTTGTGAATTTTGAATCAAATCTTGCGAATAAAGATGGGCTTTGGATTC 1070 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43383879546 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5