BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39560.1
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482977 jgi|Araly1|482977|fgenesh2_kg.4__2037__AT2G39560.1 1478 0.0
> Ahg482977 jgi|Araly1|482977|fgenesh2_kg.4__2037__AT2G39560.1
Length=1070
Score = 1478 bits (800), Expect = 0.0
Identities = 989/1075 (92%), Gaps = 34/1075 (3%)
Strand=Plus/Plus
Query 99 TTTGGTCGAATCGGATAAAAAGGTCTTCTCTTTGTGTTGGAGT-AACGATGAACAAGAGA 157
|||||||||||| ||||||||||||||||| || ||| || | ||||||| | ||||||
Sbjct 20 TTTGGTCGAATCTGATAAAAAGGTCTTCTC-TT-TGTCGG-TTAAACGATGTATAAGAGA 76
Query 158 AGTGAATCTTATCT---AGAAGAAGAAAGATGAGATCTCTGAGCAGTGTGGGACTTGCTC 214
|||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 77 AGTGAATCTTATCTGGAAGAAGAAGAACGATGAGATCTTTGAGCAGTGTGGGACTTGCTC 136
Query 215 TAAGCATAGTCTTTGGTTGCTTGCTATTAGCTCTTCTCGCTGAGCTTTATTACTTGCTTT 274
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 137 TAAGCATAGTCTTTGGTTGTTTGCTATTAGCTCTTCTCGCTGAACTCTATTACTTGCTTT 196
Query 275 GGTGTAAGAAGAGGTCGACGACGAGAAGACCTGATTTTCGAAATGACTATTCTACCCCTG 334
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 197 GGTGTAAGAAGAGGTCGACGACGAGAAGACCTGATTTTCGTAATGACTATTCTACCCCTG 256
Query 335 GAACCAGAGAGCTTCTCTTCATCTTCTGTTGCAGTAGTAGCACAAACCcttcttcttctt 394
|||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 257 GAACCAGAGAGCTTATCTTTATCTTCTGCTGCAGTAGTAGCACAAACCCTTCTTCTTCT- 315
Query 395 ctccttcttcttcctctttctCAAACCCTAAACCCATTGACACTCAACAACAGTGTCCTC 454
| | ||||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||
Sbjct 316 C-C-TTCTTCTTCCTCTTTCTCAGACCCTAAACCCATTGAAACTCAACAACAATGTCTTC 373
Query 455 TTAATAATGGGTTTGAGAATGTTGGTGGTCCAGGGCTTGTGCCGAGGTTTCTGTTCACAA 514
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 374 CTAATAATGGTTTTGAGAATGTGGGTGGTCCAGGGCTTGTGCCGAGGTTTCTGTTCACAA 433
Query 515 TCATGGAAGAAACAGTGGAAGAAATGGAATCTGAAGATGTGGTTTCCACAAAAGGAAAGA 574
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TCATGGAGGAAACAGTGGAAGAAATGGAATCTGAAGATGTGGTTTCCACAAAAGGAAAGA 493
Query 575 GTTTGAATGATTTGTTTCTTAATATGGAAAGTGGTGTCATAACTCCTCCATATCTCACTC 634
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 494 CTTTGAATGATTTGTTTCTTAACATGGAAAGTGGTGCCATAACTCCTCCATATCTCACTC 553
Query 635 CTCGTGCTTCTCCTTCGTTGTTCACGCCTCCTTTAACTCCATTGCTAATGGAGTCTTGTA 694
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 554 CTCGTGCTTCTCCTTCGTTGTTCACGCCTCCTTTAACTCCATTACTAATGGAGTCTTGTA 613
Query 695 ATGGTAGAAAAGAAGAGATCTCGAGTTTGTTTGAGTCATCCTCTGATGCTGAGTTTAATA 754
||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||
Sbjct 614 ATGGTAGAAAAGAAGAGATGTCGAGTTTCTTCGAGTCATCTTCTGATGCTGAGTTTAATA 673
Query 755 GACTAGTGAGATCATCTCCATTGTCATCATCACATTCACCGTCATCTTCGCCATTGTCGA 814
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 674 GACTAGTGAGATCATCTCCACTGTCATCATCACATTCACCATCATCTTCGCCATTGTCGA 733
Query 815 GATTCAAGTTCTTAAGGGATGCAGAGGAGAAGCTTTACAAGAAGAAAGTGATGGAGATTG 874
|||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||
Sbjct 734 GATTCAAGTTCTTAAGAGACGCAGAAGAGAAGCTCTACAAGAAGAAAGTGATGGAGATTG 793
Query 875 CAGAAGCTTAGTAAATTCAAGTGGTAAAAGTTTGGTAAAACACAGTTCAAGAATCGGATT 934
|||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 794 CAGAAGCTGAGTAAATTCAAGTGCTAAAA-TT-GGTAAAACACAGTTCAAGAATCGGATT 851
Query 935 TGGT-AA-T-CAAGATTCAAGAAGATGAGGTCTAGGAGAGAAAAACCAGGAATGATTAAT 991
|| | || | ||| | |||||||||||||||| ||||| ||| ||||| |||||||||
Sbjct 852 TGTTCAAGTTCAA--T-CAAGAAGATGAGGTCTTGGAGA-AAA--CCAGGGATGATTAAT 905
Query 992 AGAATTAAACCGGTTTTT--AGTCTGATTTAAT-TGTCCTTAATCATCAACAtttttttt 1048
|||||||||||||||||| ||||||||||||| | ||||||||| |||||||||||||
Sbjct 906 AGAATTAAACCGGTTTTTTTAGTCTGATTTAATCT-TCCTTAATCGTCAACATTTTTTT- 963
Query 1049 GGTCTAGCTCGTCATCGGATTAAACCGGTTGTAAATTTTCGGTGGATAGAGAATTTGTTA 1108
||||| |||| | |||||||||||||| |||||||||||||||||| | ||||
Sbjct 964 GGTCTGGCTCTTAATCGGATTAAACCGACTGTAAATTTTCGGTGGAT------T--GTTA 1015
Query 1109 GCCAAATTTGTGGATTTTGAGTCAAATCACGCGAATAAAGATAGGCTTTGGATTC 1163
|||||||||||| ||||||| ||||||| |||||||||||| ||||||||||||
Sbjct 1016 GCCAAATTTGTGAATTTTGAATCAAATCTTGCGAATAAAGATGGGCTTTGGATTC 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43383879546
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5