BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39570.1
Length=1760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482978 jgi|Araly1|482978|fgenesh2_kg.4__2038__AT2G39570.1 2176 0.0
> Ahg482978 jgi|Araly1|482978|fgenesh2_kg.4__2038__AT2G39570.1
Length=1621
Score = 2176 bits (1178), Expect = 0.0
Identities = 1280/1330 (96%), Gaps = 4/1330 (0%)
Strand=Plus/Plus
Query 7 tttttttCCTCTGTTCGGTCGGCCATTGAATTGTTGTTGATTCATTGGCTCTAAAAC-GA 65
|||||||||||||||||||| ||||||||| | || ||||||||||||||||||||| ||
Sbjct 1 TTTTTTTCCTCTGTTCGGTCAGCCATTGAA-T-TT-TTGATTCATTGGCTCTAAAACAGA 57
Query 66 AAATGGGAATTCTCAACGACGACGCCGTTTTAATCGAACCGGGAAAAATCTCCGGAGATC 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 58 AAATGGGAATTCTCAACGACGACGCCGTTTTAATCGAACCGGGAAAAATCTCCGGCGATC 117
Query 126 CCACCGTCGTTACCGTCAATTGTCCTGATGAATCCGGTCTCGGTTCAACTCTGTGTAGAA 185
|||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 118 CCACAATCGTTACCGTCAATTGTCCCGATGAATCCGGTCTCGGTTCAACTCTCTGTAGAA 177
Query 186 TCATCCTCGAATTTGGTCTCTCCATTACCCGAGCAGATTTTTCAACAGATGGAAGATGGT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCATCCTCGAATTTGGTCTCTCCATTACCCGAGCAGATTTTTCAACAGATGGAAGATGGT 237
Query 246 GTTATATAGTGTTTTGGGTTACTCCAGATATTAGCTCTCCTAAAATTGATTGGGACAGCT 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GTTATATAGTGTTTTGGGTTACTCCAGATATTAGCTCTCCTAAAATTGATTGGGACAGCT 297
Query 306 TAAAGAATCGTCTTTTATCAGCTTGTCCTTCTTGCTTAGGCTCTTTCTACTTCTGCCTTC 365
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 298 TAAAGAATCGTCTTTTATCTGCTTGTCCTTCTTGCTTAGGCTCTTTCTACTTCTGTCTCC 357
Query 366 AATCCAATGTCTCTAAGCCTCCTTCCCTTTATCTTCTCAAGTTCTTTTGCCGTGATAGGA 425
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 358 AATCCAATGTCTCTAAGCCTCCTTCCCTTTATCTTCTCAAGTTCTTCTGCCGTGACAGGA 417
Query 426 AAGGATTGCTTCATGATGTTACTAAAGTTTTGACAGAGCTAGAGTTTACAATACAAAGAG 485
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 418 AAGGATTGCTTCATGATGTTACTAAAGTCTTGACAGAGCTAGAGTTTACGATACAAAGAG 477
Query 486 TCAAAGTCATGACAACACCAGATGGAAGAGTTTTGGATATGTTTTTCATCACTGACGCAA 545
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 478 TCAAAGTCATGACAACACCAGATGGAAGAGTTTTGGACATGTTTTTCATCACTGACGCAA 537
Query 546 TGGATCTATTGCACACGAAACAGAGACAAACCAAAACGTGTGACCATCTAACGGCTGTGC 605
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 538 TGGATCTATTGCACACGAAACAGAGGCAAACCAAAACGTGTGACCATCTAACGGCTGTGC 597
Query 606 TTGGTGAGCATGGTGTGAGTTGTGAGCTTGAACTAGCTGGGCCTGAGTTAGAGAGTGTGC 665
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTGGTGAGCATGGTGTGAGCTGTGAGCTTGAACTAGCTGGGCCTGAGTTAGAGAGTGTGC 657
Query 666 AACGATTCTCTTCACTTCCACCTTTGGCTGCTGATGAGCTGTTTGGCCCAGATGGGTTTG 725
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 658 AACGGTTCTCTTCACTTCCACCTCTGGCTGCTGATGAGCTGTTTGGCCCAGATGGGTTTG 717
Query 726 ATATTAGCGGCTCTAGCTCTAACAAAGCGGTTCTTACCGTTGATAATCAGTTGAGCCCTG 785
||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 718 ATAATAGCGGCTCTAGCTCTAACAAAGCGGTTCTCACGGTTGATAATCAGTTGAGCCCTG 777
Query 786 CACATACGTTGCTTCAGATTCGTTGTGTTGATCAAAAGGGACTTTTCTATGATATCCTCA 845
| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 778 CGCATACGGTGCTTCAGATTCGTTGTGTTGATCAAAAGGGGCTTTTCTATGATATCCTCA 837
Query 846 GGACTTCCAAAGACTGCGATGTCCACATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAG 905
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 838 GGACTTCCAAAGATTGCGATGTCCACATTGCCTACGGCAGGTTCTCCTCCAAGGTTAAAG 897
Query 906 GTTATAGGAATTTGGAGTTGTTTGTTAGAGGCACAGACGGGAATAAAATAATGGACCCAA 965
| ||| |||||||||||||||||||| |||| |||||||| || |||||| |||||||||
Sbjct 898 GCTATCGGAATTTGGAGTTGTTTGTTCGAGGTACAGACGGTAAGAAAATAGTGGACCCAA 957
Query 966 AACATCAAGCCAACTTCTGTGCTCGACTTAAGGAGGAAATGGTGTGTCCTTTGCGAGTGA 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AACATCAAGCCAACTTCTGTGCTCGACTTAAGGAGGAAATGGTGTGTCCTTTGCGAGTGA 1017
Query 1026 TTATCGTGAACCGAGGACCAGATACTGAGCTATTAGTAGCCAACCCTGTGGAACTATCCG 1085
|||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1018 TTATTGTAAACCGAGGACCAGATACTGAGCTATTAGTAGCCAACCCTGTGGAGCTATCTG 1077
Query 1086 GAAAAGGAAGACCACGAGTTTTCTACGATGTCACACTTGCGTTGAAATCACTAGGAATCT 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GAAAAGGAAGACCACGAGTTTTCTACGATGTCACACTTGCGTTGAAATCACTAGGAATCT 1137
Query 1146 GCATCTTCTCCGCTGAGATTGGGAGACATTCGACTTTAGATCGACAATGGGAAGTTTATA 1205
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1138 GCATATTCTCCGCTGAGATTGGGAGGCATTCGACTTTAGATCGACAATGGGAAGTTTATA 1197
Query 1206 GATTTCTTTTGGATGAGAGTCGTGAATTCCCATTGGCTAGCCTCCGTGCGAGAAATCAAG 1265
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1198 GATTTCTTTTGGATGAGAGTCGTGAATTCCCGTTGGCTAGTCTCCGTGCGAGAAATCAAG 1257
Query 1266 TAGTAGATAGAGTCACAAAGACACTTATGGGTTGGTGAAGCGGATGAGAGTGAGCTTTCA 1325
|||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct 1258 TAGTAGATAGAGTCACAAAGACACTTATGGGTTGGTGAAGTGAATGATAGTGAGCTTTCA 1317
Query 1326 TGAACGTTAT 1335
||||| ||||
Sbjct 1318 TGAACATTAT 1327
Score = 239 bits (129), Expect = 6e-62
Identities = 209/242 (86%), Gaps = 27/242 (11%)
Strand=Plus/Plus
Query 1367 TTCTTCGCTTGCGGCTTCGGGTCGATGAAAAGAGTGATGCAAGGGGGTTGTGATTGCTGT 1426
|||||||||||| |||||||||||||| |||||||| |||| |||||||||||||||||
Sbjct 1327 TTCTTCGCTTGCAGCTTCGGGTCGATG--AAGAGTGA-GCAA-GGGGTTGTGATTGCTGT 1382
Query 1427 TGTGTGGAGCTAATAGCGTTGTAAAGCTTT-GGAAATTGTAAAAGGATTATATAACCGCA 1485
||| |||||||||||||||||||||| ||| ||||||||| | | | || | ||||
Sbjct 1383 TGTATGGAGCTAATAGCGTTGTAAAGATTTGGGAAATTGT---A--A--A-ATGA-CGCA 1433
Query 1486 ATTGCAATGAATGCTTGT--AAACTCACTTTGCAAAGGT-AA-C--A--TTT---CCGTT 1534
|||||||||||||||||| ||||||||||||||||||| || | | ||| |||||
Sbjct 1434 ATTGCAATGAATGCTTGTAAAAACTCACTTTGCAAAGGTAAACCGAATCTTTCGGCCGTT 1493
Query 1535 GACTAGGTGGTCACTACAAGAGAGCGACA-G-AGTTGACCCGAGCCAGAATCGCAAACAT 1592
|| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1494 GATTAGGTGGTCACTACAAGAGAGCAACACGGAGTTGACCCGAGCCAGAATCGCAAACAT 1553
Query 1593 GT 1594
||
Sbjct 1554 GT 1555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66048484830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5