BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G39590.1

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg901888 jgi|Araly1|901888|Al_scaffold_0004_2538                    686    0.0  


> Ahg901888 jgi|Araly1|901888|Al_scaffold_0004_2538
Length=411

 Score =  686 bits (371),  Expect = 0.0
 Identities = 397/410 (97%), Gaps = 0/410 (0%)
 Strand=Plus/Plus

Query  1    ATGTGTGTAGAGGCGATAATGGTGAGGGCTAGCGTCTTAAACGATTGTCTCAAGAGCATG  60
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1    ATGTGTGTAGAGGCGATAATGGTGAGGGCTAGCGTCTTAAACGATTGTCTTAAGAGCATG  60

Query  61   AGTAATGCAGAGAAACAAGGGAAACGCCAAGTCATGATAAGACCATCTTCCAAAGTGATC  120
            |||||||||||||||| ||||||||||||||||||||| || |||||||| |||||||||
Sbjct  61   AGTAATGCAGAGAAACGAGGGAAACGCCAAGTCATGATCAGGCCATCTTCTAAAGTGATC  120

Query  121  ATTAAGTTTCTCACTGTGATGCAAAAGCATGGTTACATTGCAGAGTTTGAATATGTGGAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATTAAGTTTCTCACTGTGATGCAAAAGCATGGTTACATTGCAGAGTTTGAATATGTGGAT  180

Query  181  GATCACAGATCCGGGAAGATTGTGGTTGAGCTTAATGGAAGGCTTAACAACTGCGGTGTT  240
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GATCACAGATCCGGTAAGATTGTGGTTGAGCTTAATGGAAGGCTTAACAACTGCGGTGTT  240

Query  241  ATTAGTCCTCGATATGACCTTGGCGTCAAGGAAATTGAAGGTTGGACTGCTAAATTGCTC  300
            |||||||||||||||||  ||| ||||| |||||| |||||||||||||||||||| |||
Sbjct  241  ATTAGTCCTCGATATGATGTTGTCGTCACGGAAATCGAAGGTTGGACTGCTAAATTACTC  300

Query  301  CCTTCAAGACAGTTTGGGTACATTGTCCTGACAACATCAGCTGGAATCATGGACCATGAA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CCTTCAAGACAGTTTGGGTACATTGTCCTGACAACATCAGCTGGAATCATGGACCATGAA  360

Query  361  GAGGCTAGGAAGAAAAATGTTGGGGGCAAAGTGCTTGGTTTTTTCTACTA  410
            |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  361  GAGGCTAGGAAGAAAAATGTTGGGGGTAAAGTGCTTGGTTTTTTCTACTA  410



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14766212943


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5