BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39630.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482983 jgi|Araly1|482983|fgenesh2_kg.4__2043__AT2G39630.1 2028 0.0
> Ahg482983 jgi|Araly1|482983|fgenesh2_kg.4__2043__AT2G39630.1
Length=1324
Score = 2028 bits (1098), Expect = 0.0
Identities = 1266/1344 (94%), Gaps = 23/1344 (2%)
Strand=Plus/Plus
Query 1 TTCACGGATCAATCATTAGACTTTAGCTTTTCTTGCTTATTCTTCACGGATTGGTTTCGA 60
|||||||||||||||||| | | |||||||||||||||||||||||| || |
Sbjct 1 TTCACGGATCAATCATTA-A----A-CTTTTCTTGCTTATTCTTCACGGA-----TT-G- 47
Query 61 tctctccttcttcactctctctctttctcGTGAAAGCAAAACAGATCTCAAATCTCGGGA 120
| |||||||||||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 48 ----T-CTTCTTCACTCTCTCTCTTTCTTGTGAAACCAAAACAGATCTCAAATCTGGGGA 102
Query 121 GCAACAATGGAGTTTCTGGTAACAGTTGCGGAATTCAGCCTCTGGCTGCTGCTGATCGTC 180
||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 103 GCAACAATGGAGTTTTTGGTAACAGTTGCGGAATTCGGCCTCTTGCTGCTGCTGATCGTC 162
Query 181 TTATTCGGATTTCTATCCGTTGTTGTTTTTGAAGCTTGGAGAAGGAGACACAGTAACGTC 240
|| ||||||||||| ||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 163 TTCTTCGGATTTCTCTCCGTCGTCGTTTTTGAAGCTTGGAGAAGGAGAAACAGTAACGTC 222
Query 241 TCTGTCGAGACCGTGACTACACTCGACGATCCGAAATCTATAAAACCGATTCCTTGCCCT 300
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 223 TCTGTCGAGACGGTGACTACACTGGAGGATCCGAAATCTATAAAACCGATTCCTTGCCCT 282
Query 301 CATATTACCGACCCTGCCGAGAAGTATTTGTCTTTAATAGTTCCAGCGTATAATGAAGAA 360
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 283 CATATCACCGACCCTGCCGAGAAGTATTTGTCATTAATAGTTCCAGCGTATAATGAAGAA 342
Query 361 CTGAGACTTCCTGCTGCTCTTGAGGAAACAATGGATTACCTTCAAGATCGTGCATCACGG 420
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CTAAGACTTCCTGCAGCTCTTGAGGAAACAATGGATTACCTTCAAGATCGTGCATCACGG 402
Query 421 GACAAGAGTTTTTCTTTTGAGGTGGTGATTGTTGATGATGGAAGTGTTGATGGAACAAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GACAAGAGTTTTTCTTTTGAGGTGGTGATTGTTGATGATGGAAGTGTTGATGGAACAAAA 462
Query 481 AGAGTAGCTTTTGATTTCATTAGAAAGTACACAATTGACAACATAAGGGTTATACCCCTT 540
||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 463 AGAGTAGCTTTTGATTTTGTTAGAAAGCACACAGTTGACAACATAAGGGTTATACCCCTT 522
Query 541 GGGAAGAATCAAGGCAAAGGAGAAGCTATAAGAAAAGGAATGTTGCATTCGCGGGGTCAG 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 523 GGGAAGAATCAAGGCAAAGGGGAAGCTATAAGAAAAGGAATGTTGCATTCGCGGGGTCAG 582
Query 601 CTACTTCTCATGTTGGATGCTGATGGAGCAACTAAAGTAACGGACCTAGAAAAACTTGAA 660
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 583 CTACTTCTCATGTTGGATGCTGATGGAGCAACTAAAGTAACCGACCTAGAAAAACTTGAA 642
Query 661 AATCAGATCAATGCAGTAGCCAGAGAAGAATATTCAATCAGAAATCCAGCATCTAAGGAT 720
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 643 AATCAGATCAACGCAGTAGCCAGCGAAGAATATTCAATCAGAAATCCAGCATCTAAGGAT 702
Query 721 ATGGATTTCAAAATAGGTGATGTTCAAGTATCCGCATTTGGTTCTCGTGCTCATCTCGAG 780
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 ATGGATTTTAGAATAGGTGATGTTCAAGTATCCGCATTTGGTTCTCGTGCTCATCTCGAG 762
Query 781 GAGAAAGCTCTTGCTACAAGGAAATGGTATCGCAACTTTCTGATGAAGGGTTTCCATCTT 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 763 GAGAAAGCTCTTGCTACAAGGAAATGGTATCGCAACTTTCTGATGAAGGGCTTCCATCTT 822
Query 841 GTGGTTCTATTAGCTGCTGGTCCTGGTATTCGGGATACACAGTGTGGCTTCAAGATGTTT 900
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 823 GTGGTTCTATTGGCTGCTGGTCCTGGTATTCGAGATACACAGTGTGGCTTCAAGATGTTT 882
Query 901 ACTAGGGCTGCTGCTAGGAGACTTTTCACAAACGTCCATCTGAAAAGGTGGTGCTTTGAT 960
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 ACTAGAGCTGCTGCTAGGAGACTTTTCACAAACGTCCATCTGAAAAGGTGGTGCTTTGAT 942
Query 961 GTTGAATTGGTGTACTTGTGCAAGCGTTTTAATATACCAATGGTTGAAATCTCTGTGAAA 1020
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 943 GTTGAATTGGTGTACTTGTGCAAACGTTTTAATATTCCAATGGTTGAGATCTCTGTGAAA 1002
Query 1021 TGGTCCGAAATTCCCGGGTCTAAAGTCAGTATGTTGAGCATTCCAAACATGCTTTGGGAG 1080
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TGGTCTGAAATCCCCGGGTCAAAAGTCAGTATGTTGAGCATTCCAAACATGCTTTGGGAG 1062
Query 1081 CTTGCTTTAATGTCTGTGGGATACAGAACTGGCATGTGGAAGATCCATCAAGTATGAGAC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 CTTGCTTTAATGTCTGTGGGATACAGAACTGGCATGTGGAAGATCCATCAAGTATGAGAC 1122
Query 1141 ACATAGACAACA-A-CATACATAGAGCATTTCCTCTTGGGAATAACAACTC-GTCCACGC 1197
|||||||||||| | |||||||||||| | |||||||||||| || ||| | ||||||||
Sbjct 1123 ACATAGACAACACAACATACATAGAGCGTCTCCTCTTGGGAAAAA-AACCCAGTCCACGC 1181
Query 1198 TGGTTTTCTGCAGAGAGGATATAGTTTTGATGTCTCTGAATTTCTGGTCAAGCTCAAGGA 1257
||||| ||||| |||||||||||||| ||||||||||||| |||| |||||| |||||
Sbjct 1182 GGGTTTGCTGCAAAGAGGATATAGTTT-GATGTCTCTGAATCTCTGATCAAGCAAAAGGA 1240
Query 1258 AAGCTAAGGCGATAGAAAATATGTCGGTCTTTGTTTCAATAGATGTGATAAAAATCTTAC 1317
|||||||||||||||||| |||| ||||||| ||||||||||||| |||||||||||||
Sbjct 1241 GAGCTAAGGCGATAGAAAACATGTTGGTCTTTCTTTCAATAGATGTAATAAAAATCTTAC 1300
Query 1318 CGGATTATAAATGATGAAATGAAA 1341
||||||| ||||||||||||||||
Sbjct 1301 CGGATTAGAAATGATGAAATGAAA 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5