BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39630.1 Length=1401 Score E Sequences producing significant alignments: (Bits) Value Ahg482983 jgi|Araly1|482983|fgenesh2_kg.4__2043__AT2G39630.1 2028 0.0 > Ahg482983 jgi|Araly1|482983|fgenesh2_kg.4__2043__AT2G39630.1 Length=1324 Score = 2028 bits (1098), Expect = 0.0 Identities = 1266/1344 (94%), Gaps = 23/1344 (2%) Strand=Plus/Plus Query 1 TTCACGGATCAATCATTAGACTTTAGCTTTTCTTGCTTATTCTTCACGGATTGGTTTCGA 60 |||||||||||||||||| | | |||||||||||||||||||||||| || | Sbjct 1 TTCACGGATCAATCATTA-A----A-CTTTTCTTGCTTATTCTTCACGGA-----TT-G- 47 Query 61 tctctccttcttcactctctctctttctcGTGAAAGCAAAACAGATCTCAAATCTCGGGA 120 | |||||||||||||||||||||| |||||| ||||||||||||||||||| |||| Sbjct 48 ----T-CTTCTTCACTCTCTCTCTTTCTTGTGAAACCAAAACAGATCTCAAATCTGGGGA 102 Query 121 GCAACAATGGAGTTTCTGGTAACAGTTGCGGAATTCAGCCTCTGGCTGCTGCTGATCGTC 180 ||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| Sbjct 103 GCAACAATGGAGTTTTTGGTAACAGTTGCGGAATTCGGCCTCTTGCTGCTGCTGATCGTC 162 Query 181 TTATTCGGATTTCTATCCGTTGTTGTTTTTGAAGCTTGGAGAAGGAGACACAGTAACGTC 240 || ||||||||||| ||||| || |||||||||||||||||||||||| ||||||||||| Sbjct 163 TTCTTCGGATTTCTCTCCGTCGTCGTTTTTGAAGCTTGGAGAAGGAGAAACAGTAACGTC 222 Query 241 TCTGTCGAGACCGTGACTACACTCGACGATCCGAAATCTATAAAACCGATTCCTTGCCCT 300 ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 223 TCTGTCGAGACGGTGACTACACTGGAGGATCCGAAATCTATAAAACCGATTCCTTGCCCT 282 Query 301 CATATTACCGACCCTGCCGAGAAGTATTTGTCTTTAATAGTTCCAGCGTATAATGAAGAA 360 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 283 CATATCACCGACCCTGCCGAGAAGTATTTGTCATTAATAGTTCCAGCGTATAATGAAGAA 342 Query 361 CTGAGACTTCCTGCTGCTCTTGAGGAAACAATGGATTACCTTCAAGATCGTGCATCACGG 420 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 343 CTAAGACTTCCTGCAGCTCTTGAGGAAACAATGGATTACCTTCAAGATCGTGCATCACGG 402 Query 421 GACAAGAGTTTTTCTTTTGAGGTGGTGATTGTTGATGATGGAAGTGTTGATGGAACAAAA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 403 GACAAGAGTTTTTCTTTTGAGGTGGTGATTGTTGATGATGGAAGTGTTGATGGAACAAAA 462 Query 481 AGAGTAGCTTTTGATTTCATTAGAAAGTACACAATTGACAACATAAGGGTTATACCCCTT 540 ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct 463 AGAGTAGCTTTTGATTTTGTTAGAAAGCACACAGTTGACAACATAAGGGTTATACCCCTT 522 Query 541 GGGAAGAATCAAGGCAAAGGAGAAGCTATAAGAAAAGGAATGTTGCATTCGCGGGGTCAG 600 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 523 GGGAAGAATCAAGGCAAAGGGGAAGCTATAAGAAAAGGAATGTTGCATTCGCGGGGTCAG 582 Query 601 CTACTTCTCATGTTGGATGCTGATGGAGCAACTAAAGTAACGGACCTAGAAAAACTTGAA 660 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 583 CTACTTCTCATGTTGGATGCTGATGGAGCAACTAAAGTAACCGACCTAGAAAAACTTGAA 642 Query 661 AATCAGATCAATGCAGTAGCCAGAGAAGAATATTCAATCAGAAATCCAGCATCTAAGGAT 720 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 643 AATCAGATCAACGCAGTAGCCAGCGAAGAATATTCAATCAGAAATCCAGCATCTAAGGAT 702 Query 721 ATGGATTTCAAAATAGGTGATGTTCAAGTATCCGCATTTGGTTCTCGTGCTCATCTCGAG 780 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 703 ATGGATTTTAGAATAGGTGATGTTCAAGTATCCGCATTTGGTTCTCGTGCTCATCTCGAG 762 Query 781 GAGAAAGCTCTTGCTACAAGGAAATGGTATCGCAACTTTCTGATGAAGGGTTTCCATCTT 840 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 763 GAGAAAGCTCTTGCTACAAGGAAATGGTATCGCAACTTTCTGATGAAGGGCTTCCATCTT 822 Query 841 GTGGTTCTATTAGCTGCTGGTCCTGGTATTCGGGATACACAGTGTGGCTTCAAGATGTTT 900 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 823 GTGGTTCTATTGGCTGCTGGTCCTGGTATTCGAGATACACAGTGTGGCTTCAAGATGTTT 882 Query 901 ACTAGGGCTGCTGCTAGGAGACTTTTCACAAACGTCCATCTGAAAAGGTGGTGCTTTGAT 960 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 883 ACTAGAGCTGCTGCTAGGAGACTTTTCACAAACGTCCATCTGAAAAGGTGGTGCTTTGAT 942 Query 961 GTTGAATTGGTGTACTTGTGCAAGCGTTTTAATATACCAATGGTTGAAATCTCTGTGAAA 1020 ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| Sbjct 943 GTTGAATTGGTGTACTTGTGCAAACGTTTTAATATTCCAATGGTTGAGATCTCTGTGAAA 1002 Query 1021 TGGTCCGAAATTCCCGGGTCTAAAGTCAGTATGTTGAGCATTCCAAACATGCTTTGGGAG 1080 ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1003 TGGTCTGAAATCCCCGGGTCAAAAGTCAGTATGTTGAGCATTCCAAACATGCTTTGGGAG 1062 Query 1081 CTTGCTTTAATGTCTGTGGGATACAGAACTGGCATGTGGAAGATCCATCAAGTATGAGAC 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1063 CTTGCTTTAATGTCTGTGGGATACAGAACTGGCATGTGGAAGATCCATCAAGTATGAGAC 1122 Query 1141 ACATAGACAACA-A-CATACATAGAGCATTTCCTCTTGGGAATAACAACTC-GTCCACGC 1197 |||||||||||| | |||||||||||| | |||||||||||| || ||| | |||||||| Sbjct 1123 ACATAGACAACACAACATACATAGAGCGTCTCCTCTTGGGAAAAA-AACCCAGTCCACGC 1181 Query 1198 TGGTTTTCTGCAGAGAGGATATAGTTTTGATGTCTCTGAATTTCTGGTCAAGCTCAAGGA 1257 ||||| ||||| |||||||||||||| ||||||||||||| |||| |||||| ||||| Sbjct 1182 GGGTTTGCTGCAAAGAGGATATAGTTT-GATGTCTCTGAATCTCTGATCAAGCAAAAGGA 1240 Query 1258 AAGCTAAGGCGATAGAAAATATGTCGGTCTTTGTTTCAATAGATGTGATAAAAATCTTAC 1317 |||||||||||||||||| |||| ||||||| ||||||||||||| ||||||||||||| Sbjct 1241 GAGCTAAGGCGATAGAAAACATGTTGGTCTTTCTTTCAATAGATGTAATAAAAATCTTAC 1300 Query 1318 CGGATTATAAATGATGAAATGAAA 1341 ||||||| |||||||||||||||| Sbjct 1301 CGGATTAGAAATGATGAAATGAAA 1324 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52374086875 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5