BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39640.1
Length=1735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321648 jgi|Araly1|321648|fgenesh1_pm.C_scaffold_4001705 2342 0.0
Ahg925902 jgi|Araly1|925902|scaffold_201463.1 63.9 4e-09
Ahg908221 jgi|Araly1|908221|Al_scaffold_0002_1302 54.7 2e-06
> Ahg321648 jgi|Araly1|321648|fgenesh1_pm.C_scaffold_4001705
Length=1650
Score = 2342 bits (1268), Expect = 0.0
Identities = 1517/1635 (93%), Gaps = 25/1635 (2%)
Strand=Plus/Plus
Query 1 ATGGCCAAAACGATTCGGTCTTTCATTCTCCCTTTCCTCCTCATAGTCGCCGGCGTGATC 60
||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCCAAAACGACACGGTTTTTCACTCTCCCTTTCCTCCTCATTGTCGCCGGCGTGATC 60
Query 61 TTTCAACTCTCAGCCGTGACTTCCGCCATTGGTATCAACTATGGAACACTAGGGAACCTT 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 TTTCAACTCTCAGCCGTGACTTCCGCCATTGGTATCAACTATGGAACATTAGGGAACCTT 120
Query 121 CAACCTCCACAACAAGTGGTTGACTTCATCAAGACAAAGACCACTTTTGACA-GTGTCAA 179
|||||||| ||||||||||||||||||||||||| ||| |||||||||| || |||||||
Sbjct 121 CAACCTCCGCAACAAGTGGTTGACTTCATCAAGAAAAATACCACTTTTG-CAAGTGTCAA 179
Query 180 GATCTATGATGCTAATCCCGACATCCTCCGAGCCTTCGCGGGCTCTGAAATCAACATCAC 239
|||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 180 GATCTATGATGCGAATCCCGACATCCTCCGATCCTTCGCTGGCTCTGAAATCAACGTCAC 239
Query 240 CATCATGGTCCCTAACGGTAACATTCCTGCCATGGTCAACGTTGCAAATGCTCGTCAATG 299
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CATTATGGTCCCTAACGGTAACATTCCTGCGATGGTCAACGTTGCAAATGCTCGTCAATG 299
Query 300 GGTCGCTGCCAATGTCTTACCGTTTCAGCAGCAGATCAAGTTCAAATACGTTTGTGTCGG 359
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 300 GGTCGCTGCCAATGTCTTACCGTTTCATCAGCAGATCAAGTTCAAATACCTTTGTGTCGG 359
Query 360 AAACGAGATTCTTGCTAGTAACGACAATAACTTGATATCAAATCTTGTACCAGCGATGCA 419
||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 360 AAACGAGATTCTTTCTAGTAACGACAACAACTTGATATCAAATCTTGTGCCAGCGATGCA 419
Query 420 AAGTCTTAACGAAGCTTTAAAAGCTTCCAATCTCACTTATATCAAGGTGACAACTCCACA 479
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 420 AAGTCTTAACGAAGCTTTAAAAGCTTCCAATCTCACTTATATTAAGGTAACAACTCCACA 479
Query 480 TGCATTTACCATAAGCTATAACCGTAATACACCAAGTGAGAGCAGATTTACTAACGATCA 539
||||||||||||||||| ||||| |||||||||||| || |||||||||||| |||||||
Sbjct 480 TGCATTTACCATAAGCTTTAACCATAATACACCAAGCGAAAGCAGATTTACTGACGATCA 539
Query 540 AAAAGATATTTTTACAAAGATCTTGGAATTTCATCGTCAGGCTAAGTCCCCATTCATGAT 599
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 AAAAGATTTTTTTACAAAGATCTTGGAGTTTCATCGTCAGGCTAAGTCCCCATTCATGAT 599
Query 600 CAACGCCTACACTTTTTTCACGATGGACACGAACAATGTCAATTACGCAATATTTGGTCC 659
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 600 CAACGCCTACACTTTTTTCACGATGGACCCGAACAATGTCAGTTACGCAATATTTGGTCC 659
Query 660 ATCAAATGCAATAACGGATACCAATACACAACAAACCTACACCAACATGTTTGACGCAGT 719
||||||| || |||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 660 ATCAAATTCAGTAACGGATACCAATACACGACAGACCTACAACAACATGTTTGACGCAGT 719
Query 720 CATGGATGCAACATATTCTGCTATGAAAGCTCTTGGCTATGGCGACGTAGATATCGCGGT 779
|||||||||||| || ||||||||||| ||||||||||| |||||| |||||||||| ||
Sbjct 720 CATGGATGCAACTTACTCTGCTATGAATGCTCTTGGCTACGGCGACCTAGATATCGCTGT 779
Query 780 AGGGGAGACCGGTTGGCCCACGGCTTGTGACGCTTCATGGTGCTCACCTCAAAACGCTGA 839
|||||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||
Sbjct 780 AGGGGAGACCGGTTGGCCTACCGCTTGTGATGCTCCATGGTGCTCACCTCAAAACGCTGA 839
Query 840 AAACTACAACCTCAATATCATCAAGCGTGCACAAGTTATAGGGACACCTCTAATGCCCAA 899
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 840 AAACTACAACCTCAATATCATCAAGCGTGCAGAGGTTATAGGGACACCTCTTATGCCCAA 899
Query 900 CCGCCACATCGATATCTTCATATTTGCATTGTTCAATGAAGATGGAAAACCCGGTCCAAC 959
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 CCGCCACATCGATATCTTCATATTTGCATTGTTCAATGAAGATGGGAAACCCGGTCCAAC 959
Query 960 ACGTGAGAGAAATTGGGGGATATTTAAACCGGATTTTTCACCGATGTATGATGTTGGAGT 1019
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 960 CCGTGAGAGAAATTGGGGGATATTTAAACCGGATTTTTCGCCGATGTATGATGTTGGGGT 1019
Query 1020 TCTAAAAGGCGGTGGAAGCCCGCTTCCGTTTCCACCGATAAACAACAATGGAAAATGGTG 1079
|||||||||||| |||||||||||| |||||||||||| ||||||||||||
Sbjct 1020 CCTAAAAGGCGGTATAAGCCCGCTTCC------ACCGATAAACAA---TGGAAAATGGTG 1070
Query 1080 TGTGGGAAAACCAGAAGCGACGTTA-ATGCAACTACAAGCAAATATTGATTGGGTATGCA 1138
||||| ||||| ||||||||| | | ||||||||||||||||||||||||||||| ||||
Sbjct 1071 TGTGGCAAAACAAGAAGCGACAT-ACATGCAACTACAAGCAAATATTGATTGGGTGTGCA 1129
Query 1139 GCCATGGTATTGATTGTACACCAATCTCACCTGGTGGCATATGTTTTGACAACAACAACA 1198
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1130 GCCATGGTATTGATTGTACACCAATCTCACTTGGTGGAATATGTTTTGACAACAACAACA 1189
Query 1199 TGACGACTCGGTCCTCGTTTATTATGAACGCTTATTACCAAAGCAAGGGATGCGT-TGAT 1257
|||||||||| |||||||| ||||||||||||||||| |||||||||||||| | ||||
Sbjct 1190 TGACGACTCGCTCCTCGTTCATTATGAACGCTTATTATCAAAGCAAGGGATGT-TCTGAT 1248
Query 1258 GTTGTCT-GTGATTTTAGCGGTACTGGCATCGTTACCAGTACCAACCCAAGCACTAGCAC 1316
| || || || |||||||||||| |||||| || |||| |||||||||||||||||||||
Sbjct 1249 GATG-CTTGTAATTTTAGCGGTAGTGGCATGGTCACCACTACCAACCCAAGCACTAGCAC 1307
Query 1317 ATGCCCTATACCGATAGGGGAAGGTGGCGGCGGCAATGGCGCAAAAAGCAAAAGTGCAAA 1376
|||||||||||| ||||||||||| || ||||||| | | |||||||||||| |||
Sbjct 1308 ATGCCCTATACCAATAGGGGAAGGCGGTGGCGGCA----C--AGAAAGCAAAAGTGGAAA 1361
Query 1377 TTGGTGTATGGCGAAACAAGAAGCGACAGAGACACAACTACAAGCTAATATTGATTGGGT 1436
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1362 TTGGTGTATGGCGAAACAAGAAGCGACAGAGACACAACTACAAGCGAATATTGATTGGGT 1421
Query 1437 GTGTAGCCAAGGTATTGATTGTAAACCAATATCACCTGGTGGCATATGTTTTGATAACAA 1496
||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1422 GTGCAGCCAAGGTATAGATTGTAAACCAATCTCACCTGGTGGCCTATGTTTTGATAACAA 1481
Query 1497 CAACATGAAGACTCGATCCACGTTCATAATGAACGCTTATTACGAGAGCAAAGGATACTC 1556
|||||| ||||||||||| |||||||| ||||||||||||||| | ||||||||||||||
Sbjct 1482 CAACATTAAGACTCGATCTACGTTCATTATGAACGCTTATTACCAAAGCAAAGGATACTC 1541
Query 1557 CAAAGACGCTTGTGACTTCC-GTGGTAGTGGCATCGTCACTACTACCAACCCAAGCACTA 1615
|| ||| |||||||| ||| | ||||||||||| ||||||| |||||||||||||||||
Sbjct 1542 CAGAGAGGCTTGTGATTTCAAG-GGTAGTGGCATTGTCACTAATACCAACCCAAGCACTA 1600
Query 1616 GCACATGCGTCGTAC 1630
|||||||||||||||
Sbjct 1601 GCACATGCGTCGTAC 1615
> Ahg925902 jgi|Araly1|925902|scaffold_201463.1
Length=295
Score = 63.9 bits (34), Expect = 4e-09
Identities = 44/49 (90%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1400 CGACAGAGACACAACTACAAGCTAATATTGATTGGGTGTGTAGCCAAGG 1448
||||||| |||||||||||||||||||||||||||| |||| | ||||
Sbjct 31 CGACAGATACACAACTACAAGCTAATATTGATTGGGCATGTAACGAAGG 79
> Ahg908221 jgi|Araly1|908221|Al_scaffold_0002_1302
Length=336
Score = 54.7 bits (29), Expect = 2e-06
Identities = 33/35 (94%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1408 ACACAACTACAAGCTAATATTGATTGGGTGTGTAG 1442
|||||||||||||||||||||||||||| |||||
Sbjct 106 ACACAACTACAAGCTAATATTGATTGGGCATGTAG 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65096228705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5