BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39650.1 Length=1311 Score E Sequences producing significant alignments: (Bits) Value Ahg934727 jgi|Araly1|934727|scaffold_402715.1 1483 0.0 > Ahg934727 jgi|Araly1|934727|scaffold_402715.1 Length=960 Score = 1483 bits (803), Expect = 0.0 Identities = 908/959 (95%), Gaps = 5/959 (1%) Strand=Plus/Plus Query 116 GACCGAGATTTGGGAACGATGGGTATGGACTTGAGAGTTGTTCCGGCGGAGGAATGGTTG 175 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 3 GACCGAGATTTGGGAACGATGGGGATGGACTTGAGGGTTGTTCCGGCGGAGGAATGGTTG 62 Query 176 AATCGAGGGATAGATTCGAGTCACGACGGTGAACATGACCTAGGCCTAATGGTTACAGAT 235 |||||||||| |||||||||||| |||||||||| ||||||||| || |||||||||||| Sbjct 63 AATCGAGGGAGAGATTCGAGTCATGACGGTGAACGTGACCTAGGGCTCATGGTTACAGAT 122 Query 236 TTTCTGGAAAC--G-GGAGGTGGTAGCGGTGGTGCTGGTTCCTGGTGCAGCAGCGACAGC 292 ||||||||||| | || ||||| ||||||||||||||||||||||| |||||||| ||| Sbjct 123 TTTCTGGAAACGGGTGGCGGTGGAAGCGGTGGTGCTGGTTCCTGGTGTAGCAGCGATAGC 182 Query 293 GATTCTGGATTCCCAGATCCTTCTTACCTTTCCGATAAGATTCAGTATCTCAAGTACTCT 352 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 183 GATTCTGGATTCCCAGATCCTTCTTACCTTTCCGATAAGATTCAGTATCTTAAGTACTCT 242 Query 353 ATGGCTCAACACGAAACCGAGGTTCTCTCGGTGGTTCGTACATTGATGCTTACTATTAAG 412 |||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||| Sbjct 243 GTGGCTCAACATGAAACTGAGGTTCTCTCGGCGGTTCGTACATTGATGCTGACTATTAAG 302 Query 413 GAGAAAGATCTACACTCTGTGAAATCCGGTACATGTAACGCTAGTTGCATCAGGTTTTAT 472 ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 303 GAGAAAGATCTTCACTCTGTGAAATCCGGTACATGTAACGCCAGTTGCATTAGGTTTTAT 362 Query 473 CTCGCTAAGCTTTTGAGACTTTCTGGATATGATGCAGCTGTATGTTCAGCTAGATGGCAA 532 || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 363 CTTGCAAAGCTTTTGAGACTTTCTGGATATGATGCAGCTGTTTGTTCAGCTAGATGGCAA 422 Query 533 GGTGGTGGCAAAGTTCCTGGTGGAGATAATGAGTATATAGATATCATATTGAGTGATACT 592 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 GGCGGTGGCAAAGTTCCTGGTGGAGATAATGAGTATATAGATATCATATTGAGTGATACT 482 Query 593 GAAGTTGGTCAAGATGATCGTTTGATTGTTGATATTGATTTCAGAAGTCATTTTGAGATC 652 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 483 GAAGTTGGCCAAGATGATCGTTTGATTGTTGACATTGATTTCAGAAGTCATTTTGAAATC 542 Query 653 GCTAGAGCTGTGGATTCTTACCAACGGATAATGGAATCACTTCCTGTGGTTTATGTAGGA 712 ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 543 GCTCGAGCTGTGGATTCTTACCAACGGATAATGGAATCACTCCCTGTGGTTTATGTAGGA 602 Query 713 ACTGTTGCAAGATTAAACCAGTTCCTTCAAGTAATGGTTGATGCAGCGAAATTCTCCTTA 772 || || |||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 603 ACCGTGGCAAGATTAAACCAGTTCCTCCAAGTAATGGTTGATGCAGCTAAATTCTCCTTA 662 Query 773 AAGCAGAATTCAATGCCGTTACCTCCATGGAGATCTTTGAACTACCTGCGATCCAAATGG 832 ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 663 AAGCAGAATTCGATGCCGTTACCTCCTTGGAGATCTCTGAACTACCTGCGATCCAAATGG 722 Query 833 CATTCACCTCACAAAAGGCATCTCGGTCCTATCGATCAACAAGGTCCTGGAATGTTCTCA 892 ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| Sbjct 723 CATTCACCTCACAAAAGGCATCTTGGTCCGATCGATCATCAAGGTCCTGGAATGTTCTCA 782 Query 893 CCGGGATTACATGGACAGTGTGCTGAGAATTTAAAGAGGCTTCAGTTTGCTCTCCAGGTT 952 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 783 CCTGGATTGCATGGACAGTGTGCTGAGAATTTAAAGAGGCTTCAGTTTGCTCTCCAGGTC 842 Query 953 GAACAAGAGGCCGAGAGATTCATGAAGAAGAAG-AGCGGTTTTAGCCGCAGGAACTAACC 1011 ||||||||| | ||||||||||||||||||| | ||||| ||||||||||||||| |||| Sbjct 843 GAACAAGAGTCAGAGAGATTCATGAAGAAGA-GCAGCGGGTTTAGCCGCAGGAACAAACC 901 Query 1012 CGAGATAATGAGAATTCAAGGGGCTCGTGCTCCTTAAAGAGATTGTACAGATGTTTTTT 1070 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 CGAGATAATGAGAATTCAAGGGGCTCGTGCTCCTTAAAGAGATTGTACAGATGTTTTTT 960 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49026071262 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5