BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39650.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934727 jgi|Araly1|934727|scaffold_402715.1 1483 0.0
> Ahg934727 jgi|Araly1|934727|scaffold_402715.1
Length=960
Score = 1483 bits (803), Expect = 0.0
Identities = 908/959 (95%), Gaps = 5/959 (1%)
Strand=Plus/Plus
Query 116 GACCGAGATTTGGGAACGATGGGTATGGACTTGAGAGTTGTTCCGGCGGAGGAATGGTTG 175
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 3 GACCGAGATTTGGGAACGATGGGGATGGACTTGAGGGTTGTTCCGGCGGAGGAATGGTTG 62
Query 176 AATCGAGGGATAGATTCGAGTCACGACGGTGAACATGACCTAGGCCTAATGGTTACAGAT 235
|||||||||| |||||||||||| |||||||||| ||||||||| || ||||||||||||
Sbjct 63 AATCGAGGGAGAGATTCGAGTCATGACGGTGAACGTGACCTAGGGCTCATGGTTACAGAT 122
Query 236 TTTCTGGAAAC--G-GGAGGTGGTAGCGGTGGTGCTGGTTCCTGGTGCAGCAGCGACAGC 292
||||||||||| | || ||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 123 TTTCTGGAAACGGGTGGCGGTGGAAGCGGTGGTGCTGGTTCCTGGTGTAGCAGCGATAGC 182
Query 293 GATTCTGGATTCCCAGATCCTTCTTACCTTTCCGATAAGATTCAGTATCTCAAGTACTCT 352
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 183 GATTCTGGATTCCCAGATCCTTCTTACCTTTCCGATAAGATTCAGTATCTTAAGTACTCT 242
Query 353 ATGGCTCAACACGAAACCGAGGTTCTCTCGGTGGTTCGTACATTGATGCTTACTATTAAG 412
|||||||||| ||||| ||||||||||||| |||||||||||||||||| |||||||||
Sbjct 243 GTGGCTCAACATGAAACTGAGGTTCTCTCGGCGGTTCGTACATTGATGCTGACTATTAAG 302
Query 413 GAGAAAGATCTACACTCTGTGAAATCCGGTACATGTAACGCTAGTTGCATCAGGTTTTAT 472
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 303 GAGAAAGATCTTCACTCTGTGAAATCCGGTACATGTAACGCCAGTTGCATTAGGTTTTAT 362
Query 473 CTCGCTAAGCTTTTGAGACTTTCTGGATATGATGCAGCTGTATGTTCAGCTAGATGGCAA 532
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 363 CTTGCAAAGCTTTTGAGACTTTCTGGATATGATGCAGCTGTTTGTTCAGCTAGATGGCAA 422
Query 533 GGTGGTGGCAAAGTTCCTGGTGGAGATAATGAGTATATAGATATCATATTGAGTGATACT 592
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GGCGGTGGCAAAGTTCCTGGTGGAGATAATGAGTATATAGATATCATATTGAGTGATACT 482
Query 593 GAAGTTGGTCAAGATGATCGTTTGATTGTTGATATTGATTTCAGAAGTCATTTTGAGATC 652
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 483 GAAGTTGGCCAAGATGATCGTTTGATTGTTGACATTGATTTCAGAAGTCATTTTGAAATC 542
Query 653 GCTAGAGCTGTGGATTCTTACCAACGGATAATGGAATCACTTCCTGTGGTTTATGTAGGA 712
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 543 GCTCGAGCTGTGGATTCTTACCAACGGATAATGGAATCACTCCCTGTGGTTTATGTAGGA 602
Query 713 ACTGTTGCAAGATTAAACCAGTTCCTTCAAGTAATGGTTGATGCAGCGAAATTCTCCTTA 772
|| || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 603 ACCGTGGCAAGATTAAACCAGTTCCTCCAAGTAATGGTTGATGCAGCTAAATTCTCCTTA 662
Query 773 AAGCAGAATTCAATGCCGTTACCTCCATGGAGATCTTTGAACTACCTGCGATCCAAATGG 832
||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 663 AAGCAGAATTCGATGCCGTTACCTCCTTGGAGATCTCTGAACTACCTGCGATCCAAATGG 722
Query 833 CATTCACCTCACAAAAGGCATCTCGGTCCTATCGATCAACAAGGTCCTGGAATGTTCTCA 892
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 723 CATTCACCTCACAAAAGGCATCTTGGTCCGATCGATCATCAAGGTCCTGGAATGTTCTCA 782
Query 893 CCGGGATTACATGGACAGTGTGCTGAGAATTTAAAGAGGCTTCAGTTTGCTCTCCAGGTT 952
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CCTGGATTGCATGGACAGTGTGCTGAGAATTTAAAGAGGCTTCAGTTTGCTCTCCAGGTC 842
Query 953 GAACAAGAGGCCGAGAGATTCATGAAGAAGAAG-AGCGGTTTTAGCCGCAGGAACTAACC 1011
||||||||| | ||||||||||||||||||| | ||||| ||||||||||||||| ||||
Sbjct 843 GAACAAGAGTCAGAGAGATTCATGAAGAAGA-GCAGCGGGTTTAGCCGCAGGAACAAACC 901
Query 1012 CGAGATAATGAGAATTCAAGGGGCTCGTGCTCCTTAAAGAGATTGTACAGATGTTTTTT 1070
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CGAGATAATGAGAATTCAAGGGGCTCGTGCTCCTTAAAGAGATTGTACAGATGTTTTTT 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5