BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39660.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482986 jgi|Araly1|482986|fgenesh2_kg.4__2046__AT2G39660.1 2612 0.0
Ahg485972 jgi|Araly1|485972|fgenesh2_kg.5__1964__AT3G55450.1 736 0.0
> Ahg482986 jgi|Araly1|482986|fgenesh2_kg.4__2046__AT2G39660.1
Length=1767
Score = 2612 bits (1414), Expect = 0.0
Identities = 1669/1787 (93%), Gaps = 37/1787 (2%)
Strand=Plus/Plus
Query 1 CTTCTCCTTCTTCTAGTCACCCCTCGTGCCTCTCTTTAACACCAAACCC-AAA-Actccc 58
||||| |||||||| ||||||||||||||||||| |||||||||||||| ||| ||| ||
Sbjct 1 CTTCTTCTTCTTCTGGTCACCCCTCGTGCCTCTCATTAACACCAAACCCAAAACACTTCC 60
Query 59 ttctctttcttccttcctctccgatctccgttcacatctctctctcatcttta--t-ctt 115
|||||||||||| |||| ||| |||||| ||||||| ||||||||||||| | |||
Sbjct 61 TTCTCTTTCTTCTTTCCGCTCTGATCTCTGTTCACA----TCTCTCATCTTTATCTCCTT 116
Query 116 cttctttttttGCCTTGTGGGTTGAAAGTTTCTATATTTTCTCTTTCTCTTCTGTTTACA 175
|| |||||||||||||||||| ||||||||||||||| |||||||| |||||||||||
Sbjct 117 TTTTTTTTTTTGCCTTGTGGGTCCAAAGTTTCTATATTTCCTCTTTCTGTTCTGTTTACA 176
Query 176 TAATCCATTTTCAGCTCAAGCAGCTGAAGAATAACGATCAAGAACCAAAAAAGAAGAAAA 235
|||||||| |||||||||||||||||||||| |||||||||||||| ||| | |||||||
Sbjct 177 TAATCCATATTCAGCTCAAGCAGCTGAAGAAGAACGATCAAGAACC-AAATATAAGAAAA 235
Query 236 CGAATCTGTTCTTAGCTTTGATGGGTTCTTGCTTCAGTTCTCGAGTCAAAGCAGACATCT 295
|||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||
Sbjct 236 CGAATCTGTTCTTAGC--TGATGGGTTCCTGCTTCAGTTCTCGAGTCAAAGCCGACATCT 293
Query 296 TCCACAATGGTAAGAGCAGCGATCTTTATGGTCTAAGTCTCTCAAGTCGGAAATCGTCTT 355
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 294 TCCACAATGGTAAGAGCAGCGATCTTTACGGTCTAAGTCTCTCCAGTCGGAAATCGTCGT 353
Query 356 CGACTGTAGCGGCGGCTCAGAAGACGGAAGGGGAGATATTGAGTTCGACCCCTGTCAAAA 415
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 354 CAACTGTAGCGGCGGCTCAGAAGACGGAAGGGGAGATATTGAGTTCGACCCCCGTCAAAA 413
Query 416 GCTTCACCTTTAACGAACTCAAACTCGCCACAAGAAACTTCAGACCAGATAGTGTGATCG 475
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 414 GCTTCACCTTTAACGAACTCAAACTCGCCACCAGAAACTTCAGACCAGATAGTGTGATCG 473
Query 476 GAGAAGGTGGCTTTGGTTGTGTCTTTAAAGGCTGGTTAGATGAGTCCACTCTCACTCCGA 535
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 474 GAGAAGGTGGCTTTGGTTGTGTCTTTAAAGGCTGGTTAGATGAGACCACTCTCACTCCGA 533
Query 536 CTAAACCTGGAACCGGTTTGGTCATCGCCGTTAAAAAGCTTAACCAAGAAGGTTTTCAAG 595
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 534 CTAAACCTGGAACCGGTTTGGTTATCGCCGTTAAAAAGCTTAACCAAGAAGGTTTTCAAG 593
Query 596 GTCACCGTGAATGGCTGACAGAGATCAATTACTTGGGGCAACTGAGTCACCCAAATCTAG 655
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 594 GTCACCGTGAATGGCTGACAGAGATCAATTACTTGGGGCAATTGAGTCACCCAAATCTAG 653
Query 656 TTAAACTGATCGGTTATTGCTTAGAAGATGAACACCGTCTTCTAGTCTACGAGTTTATGC 715
| ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 654 TCAAACTAATCGGGTATTGCTTAGAGGATGAACACCGTCTTCTTGTCTACGAGTTTATGC 713
Query 716 AAAAAGGAAGTCTTGAGAATCATCTATTCAGAAGAGGTGCATATTTTAAGCCACTCCCAT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 AAAAAGGAAGTCTTGAGAATCATCTATTCAGAAGAGGTGCATATTTTAAGCCACTCCCAT 773
Query 776 GGTTTCTACGGGTCAATGTTGCGCTTGATGCAGCAAAGGGGCTTGCTTTTCTTCACAGCG 835
||||| ||||| || | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 774 GGTTTTTACGGATCCAGGTTGCGCTTGATGCAGCAAAGGGTCTTGCTTTTCTTCACAGCG 833
Query 836 ATCCCGTCAAAGTGATATACCGAGACATTAAAGCCTCGAACATCTTACTTGATGCGGACT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 834 ATCCCGTCAAAGTGATATACCGAGACATTAAAGCCTCGAACATCTTACTTGATTCGGACT 893
Query 896 ACAACGCAAAACTTTCTGACTTTGGACTAGCTAGAGACGGTCCAATGGGTGATTTGAGTT 955
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 894 ACAACGCAAAACTTTCTGACTTTGGACTAGCTAGGGACGGTCCAATGGGTGATTTGAGCT 953
Query 956 ATGTTAGTACAAGGGTCATGGGTACTTATGGGTACGCCGCGCCTGAGTACATGTCATCAG 1015
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 954 ATGTTAGTACAAGGGTCATGGGTACATATGGCTACGCCGCACCTGAGTACATGTCATCAG 1013
Query 1016 GTCACTTGAATGCAAGAAGCGATGTGTACAGTTTCGGAGTTTTGCTTCTAGAGATTTTAT 1075
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1014 GTCACTTGAATGCAAGAAGCGATGTGTACAGTTTCGGAGTATTGCTTCTAGAGATTTTAT 1073
Query 1076 CTGGTAAGCGAGCGTTGGATCATAACAGACCGGCTAAAGAAGAAAACCTTGTGGATTGGG 1135
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1074 CAGGTAAGCGAGCGTTGGATCATAACAGGCCGGCTAAAGAAGAAAACCTTGTGGATTGGG 1133
Query 1136 CTCGACCGTACCTCACAAGCAAACGTAAGGTTCTCCTAATCGTGGACAATCGGCTAGACA 1195
||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1134 CTCGACCATACCTCACAAGCAAACGCAAGGTTCTCCTAATCGTGGACACTCGGCTAGACA 1193
Query 1196 CACAGTACCTACCTGAAGAAGCCGTGAGAATGGCAAGCGTGGCGGTGCAGTGTCTCTCAT 1255
|||||||| |||||||||||||||||||| |||| ||| | |||||||| ||||||||||
Sbjct 1194 CACAGTACTTACCTGAAGAAGCCGTGAGAGTGGCCAGCATTGCGGTGCAATGTCTCTCAT 1253
Query 1256 TTGAACCCAAGTCGCGCCCGACCATGGACCAAGTGGTCCGTGCCTTACAACAACTTCAGG 1315
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1254 TCGAACCCAAGTCGCGCCCGACCATGGACCAAGTGGTCCGTGCCTTGCAACAACTTCAGG 1313
Query 1316 ACAACTTGGGAAAACCGAGTCAGACCAATCCGGTTAAGGATACCAAGAAACTTGGTTTTA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 ACAACTTGGGAAAACCGAGTCAGACCAATCCGGTTAAGGATACCAAGAAACTTGGTTTTA 1373
Query 1376 AAACTGGTACTACTAAGTCATCCGAAAAACGGTTTACACAAAAACCTTTTGGCAGGCACC 1435
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AAACTGGTACTA--A-GTCATCCGAAAAACGGTTTACACAAAAACCTTTTGGCAGGCACC 1430
Query 1436 TTGTGTAGGTCAAGTTGATAACTGAATTCCAGGATGGACATTTTTCCGGCG-GTTTACTT 1494
|||||||||||||| || ||| ||| ||||||||||| ||||||| ||||| || ||||
Sbjct 1431 TTGTGTAGGTCAAGCTGGTAATTGAGTTCCAGGATGGGCATTTTTTCGGCGAGT--ACTT 1488
Query 1495 GAAACTGCCGATATCCGTTTTCGACGGATTGAATGCGGTTCTGGACAAACCGTGCAGGTC 1554
|||||||| || |||||||||| |||||||| | | | ||||||||||||||||||
Sbjct 1489 GAAACTGCGGAGATCCGTTTTCCACGGATTG--T----T-CAGGACAAACCGTGCAGGTC 1541
Query 1555 AAGACTAATAAAGGATACATTAAATTTTCCGGTTACATGTCCCATACCCA-A-CCTTAGA 1612
||||| |||| |||||| | |||| |||||||||||||||||||||||| | |||||||
Sbjct 1542 GAGACTGATAATGGATACGTCAAATATTCCGGTTACATGTCCCATACCCACAACCTTAGA 1601
Query 1613 GAACATGTGTAGCCTTTAGCTTAGGCTTCCTTGTGTGCTGTTATATTGAGT-A--TATAT 1669
|||||||| |||||||||| ||||||||||||||||||||||||||||||| | |||||
Sbjct 1602 GAACATGTTTAGCCTTTAGGTTAGGCTTCCTTGTGTGCTGTTATATTGAGTGAAGTATAT 1661
Query 1670 ----GAGGTAATTTTTGCCTCTTGTGTTGTAACACT-T-GTATTTTTGTTCCTTTAACAT 1723
|||||| ||||| |||||| |||||||||||| | |||||||||||||||||||||
Sbjct 1662 AACTGAGGTATTTTTTACCTCTTCTGTTGTAACACTCTTGTATTTTTGTTCCTTTAACAT 1721
Query 1724 TTGATGTAGAGATTTTTCCTATATCTTCAGTTTTGAAACCCAAATTT 1770
|||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1722 TTGATGTAGAGATTTT-CCTATATCTTCAGTTTTGAAATCCAAATTT 1767
> Ahg485972 jgi|Araly1|485972|fgenesh2_kg.5__1964__AT3G55450.1
Length=1584
Score = 736 bits (398), Expect = 0.0
Identities = 798/988 (81%), Gaps = 39/988 (4%)
Strand=Plus/Plus
Query 370 GCTCAGAAGACGGAAGGGGAGA-TATTGAGTTCGAC-CCCTGTCAAAAGCTTCACCTTTA 427
||||| ||||| ||||| |||| | || || || || | || |||| ||| | |||||
Sbjct 281 GCTCACAAGACAGAAGGAGAGATTCTT-AGCTCAACGAGC-GTTAAAAACTTTAGCTTTA 338
Query 428 ACGAACTCAAACTCGCCACAAGAAACTTCAGACCAGA-TAGTG-TGATCGGAGAAGGTGG 485
| ||||| ||||| || || |||||||||||| | || | || || | |||||||||||
Sbjct 339 ATGAACTTAAACTAGCAACCAGAAACTTCAGATCGGACT-CTGTTG-TTGGAGAAGGTGG 396
Query 486 CTTTGGTTGTGTCTTTAAAGGCTGG-TTAGATGAGTCCACTCTCACTCCGACTAAACCTG 544
||||||||||||||||| ||| ||| || |||||| | ||||| ||||| || ||| ||
Sbjct 397 CTTTGGTTGTGTCTTTAGAGGTTGGCTT-GATGAGACTACTCTTACTCCTACCAAATCTA 455
Query 545 GAACCGGT-TTGGTCATCGCCGTTAAAA-AGCTTAACCAAGAAGGTTTTCAAGGTCACCG 602
| | ||| ||| | || || |||||| | ||||||| || |||||||||||||||||
Sbjct 456 GCTCTGGTCTTG-TAATTGCTGTTAAACGA-CTTAACCCTGATGGTTTTCAAGGTCACCG 513
Query 603 TGAATGGCTGACAGAGATCAATTACTTGGGGCAACTGAGTCACCCAAATCTAGTTAAACT 662
|||||||||||| |||||||| ||||||||||| | |||||||| ||| | |||||| |
Sbjct 514 TGAATGGCTGACGGAGATCAACTACTTGGGGCAGTTAAGTCACCCGAATTTGGTTAAATT 573
Query 663 GATCGGTTATTGCTTAGAAGATGAACACCGTCTTCTAGTCTACGAGTTTATGCAAAAAGG 722
||| ||||||||||| ||||||||||| || ||||| || || ||||||||||| || ||
Sbjct 574 GATTGGTTATTGCTTGGAAGATGAACAACGGCTTCTGGTGTATGAGTTTATGCACAAGGG 633
Query 723 AAGTCTTGAGAATCATCTATT--CAGAA-G-AGGT-GCATATTTTAAGCCACTCCCATGG 777
||||||||||||||||| || || || | | | | |||||||||| ||| | |||
Sbjct 634 TAGTCTTGAGAATCATCTGTTTGCA-AATGGAAATCGGG-ATTTTAAGCCGCTCTCTTGG 691
Query 778 TTTCTACGGGTCAATGTTGCGCTTGATGCAGC-AAAGGGGCTTGCTTTTCTTCACAGCGA 836
|||||||| | || ||||| ||||||||||| ||||| ||||| |||||||| |||||
Sbjct 692 ATTCTACGGATTAAGGTTGCACTTGATGCAGCTAAAGGT-CTTGCATTTCTTCATAGCGA 750
Query 837 TCCCGTCAAAGTGATATACCGAGACATTAAAGCCTCGAACATCTTACTTGA-TGCGGACT 895
|||||||||||| ||||||||||||||||| || || |||||||| || || | ||||||
Sbjct 751 TCCCGTCAAAGTCATATACCGAGACATTAAGGCGTCAAACATCTTGCTGGACT-CGGACT 809
Query 896 ACAACGCAAAACTTTCTGACTTTGGACTAGCTAGAGACGGTCCAATGGGTGATTTGAGTT 955
|||||| || ||||| |||||||| |||| || |||||||||||||| || || |
Sbjct 810 TCAACGCTAAGCTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAGACAAGCT 869
Query 956 ATGTTAGTACAAGGGTCATGGGTAC-TTATGGGTACGCCGCGCCTGAGTACATGTCATCA 1014
||||||| ||||||||||||||||| || ||| ||||| || ||||||||| | ||| ||
Sbjct 870 ATGTTAGCACAAGGGTCATGGGTACATT-TGGCTACGCTGCTCCTGAGTACGTCTCAACA 928
Query 1015 GGTCACTTGAATGCAAGAAGCGATGTGTACAGTTTCGGAGTT-TTGCTTCTAGAGATTT- 1072
|||||||||||||| |||||||| |||||||||||||| || || || ||||| |||
Sbjct 929 GGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCGGGGTGGTT-CTGCTAGA-ATTAC 986
Query 1073 TATCTGGTAAG-CGAGCGTTGGATCATAACAGACCGGCTAAAGAAG-AAAACCTTGTGGA 1130
||| ||| ||| | ||| |||| |||||| | ||||| || || | |||||||||||||
Sbjct 987 TATGTGG-AAGGCAAGCACTGGACCATAACCGCCCGGCCAAGGA-GCAAAACCTTGTGGA 1044
Query 1131 TTGGGCTCGACCGTACCTCACAAGCAAACGTAAGGTTCTCCTAATCGTGGACAATCGGCT 1190
|||||||||||| ||||||||||||| || |||||||| ||||| ||||||| ||||||
Sbjct 1045 TTGGGCTCGACCATACCTCACAAGCAGGCGAAAGGTTCTACTAATTGTGGACACTCGGCT 1104
Query 1191 -AGACACACAGTACCTACCTGAAGAAGCCGTGAGAATGGCAAGCGTGGCGGTGCAGTGTC 1249
| || | |||||| ||| |||| || |||||| |||||||| | || |||||||| |
Sbjct 1105 TA-ACTCTCAGTACAAACCCGAAGGGGCTGTGAGACTGGCAAGCATTGCTGTGCAGTGCC 1163
Query 1250 TCTCATTTGAACCCAAGTCGCGCCCGACCATGGACCAAGTGGTCCGTGCCTT-ACAACAA 1308
||||||| |||||||| || ||||||||||||||||||||||| || ||||| | | ||
Sbjct 1164 TCTCATTCGAACCCAAATCACGCCCGACCATGGACCAAGTGGTTCGAGCCTTGATA-CAG 1222
Query 1309 CTTCAGGACAACTTGGGAAAACCGAGTC 1336
|| || |||| | ||| |||||| |||
Sbjct 1223 CTGCAAGACAGCGTGGTTAAACCGGGTC 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5