BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39670.2
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482988 jgi|Araly1|482988|fgenesh2_kg.4__2048__AT2G39670.2 2433 0.0
Ahg914114 jgi|Araly1|914114|Al_scaffold_0001_4368 368 7e-101
> Ahg482988 jgi|Araly1|482988|fgenesh2_kg.4__2048__AT2G39670.2
Length=1588
Score = 2433 bits (1317), Expect = 0.0
Identities = 1516/1609 (94%), Gaps = 25/1609 (2%)
Strand=Plus/Plus
Query 1 GCAGAGAGGTTTTAGCCGCAGAAGAAAAGGGTTTACTCTGTCTTCTTCAGACTTCTCAGT 60
||||||||||||||||||||||||||||||||||| | |||| | |||||||||
Sbjct 1 GCAGAGAGGTTTTAGCCGCAGAAGAAAAGGGTTTA------C-TCTT--GTCTTCTCAGT 51
Query 61 GATCGAAGCTATGATGACGACAACAACCAATACTATGGCTATGCTTCAAAACCTCGTCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 GATCGAAGCTATGATGACGACAACAACCAATACTATGGCTATGCTTCAAAACCTCGTCTT 111
Query 121 CTCTGTTCCAATCTCTCGTATGGTAGTTCGGCGTCACTCCCTCGCTACCACCTTCTCCGC 180
|||||||| |||||||||||||||||||||||||||||||| || ||| || ||||
Sbjct 112 TTCTGTTCCCATCTCTCGTATGGTAGTTCGGCGTCACTCCCT--CT-CCA---TCGCCGC 165
Query 181 TGCCGCCACAACCGTCGTACCGTCTCCTAAACCGGTATCAGCCAAACCGGCGCGTACTCC 240
||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 166 TGCCGCCACAACCGTCGTACCGTCTCCTAAACCAGCATCTGCCAAACCGGCGCGTACTCC 225
Query 241 ACACGTGGACTCACATGTTCTCATCGGAATGTCAGAGCCTGAGCTTCAAGAGCTTGCTAT 300
||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||||
Sbjct 226 ACACGTGGACTCACATGTTCTCATCGGAATGTCTGAGCCCGAGCTTCAACAGCTCGCTAT 285
Query 301 CAACCTCGTTCTGATTTTTCAGGAAGGATACAGAGGAAAGCAGCTCCATCATCTTATTTA 360
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 286 CAACCTTGTTCTGATTTTTCAAGAAGGGTACAGAGGAAAGCAGCTCCATCATCTTATTTA 345
Query 361 CAAGAGAAAGGTTAATAAAGTTGAAGACTTTAGCAATTTGCCACTGACGTTTCGTAAAGG 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 346 CAAGAGAAAGGTTAATAAAGTTGAAGACTTTAGCAATTTGCCACAGACGTTTCGTAAAGG 405
Query 421 ACTTGTGGATGGTGGATTTAAAGTGGGAAGATCACCCATTTACCAAACTGTTACTGCCAC 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 ACTTGTGGAAGGTGGATTTAAAGTGGGAAGATCACCCATTTACCAAACTGTTACTGCCAC 465
Query 481 TGATGGTACCATTAAGCTTCTGCTAAAGCTTGAAGATAACCTATTGATCGAAACTGTTGG 540
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 466 TGATGGTACCATTAAGCTTCTGCTAAAGCTTGAAGATAACCTGTTGATTGAAACTGTTGG 525
Query 541 TATACCAGTTCAAGATGATGAGAAGGGCATAACGCGCCTCACCGCTTGTGTCTCTTCCCA 600
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 526 TATACCGGTTCAAGATGATGAGAAGGGCATAACGCGCCTCACTGCTTGTGTCTCTTCCCA 585
Query 601 GGTTGGATGTCCGCTT-CGTTGTTCGTTTTGTGCCACGGGAAAAGGAGGCTTTTCAAGAA 659
||||||||||||| || ||||| ||||| |||||||| ||||||||||| ||||||||||
Sbjct 586 GGTTGGATGTCCG-TTGCGTTGCTCGTTCTGTGCCACTGGAAAAGGAGGGTTTTCAAGAA 644
Query 660 ATCTGCAGCGCCATGAAATTATTGAGCAGGTGTTGGCTATCGAGGACGTGTTCAAGCATA 719
|||| ||||| |||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 645 ATCTTCAGCGACATGAAATTATTGAGCAGGTACTGGCTATTGAGGATGTGTTCAAGCATA 704
Query 720 GGGTGACAAATGTGGTTTTCATGGGAATGGGTGAGCCGATGTTGAACCTAAAGTCAGTAC 779
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GAGTGACAAATGTGGTTTTCATGGGAATGGGTGAGCCGATGTTGAACCTAAAGTCAGTAC 764
Query 780 TTGATGCTCATCGTTGTTTGAACAAGGACATTGAAATCGGACAACGAATGATTACAATAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TTGATGCTCATCGTTGTTTGAACAAGGACATTGAAATCGGACAACGAATGATTACAATAT 824
Query 840 CGACTGTAGGTGTTCCAAACACAATCAAGAAGCTTGCATCTCATAAGCTTCAGTCGACCT 899
|||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 825 CGACAGTAGGTGTTCCGAACACAATCAAGAAGCTTGCCTCTCATAAGCTGCAGTCAACCT 884
Query 900 TAGCTGTCAGCTTACATGCGCCAAATCAGAGCCTCAGGGAGAAAATTGTACCAAGTGCCA 959
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 885 TAGCTGTCAGCTTACATGCGCCAAATCAGAGTCTCCGGGAGAAAATTGTACCAAGTGCCA 944
Query 960 AGGCTTATCCGCTGGAAGCAATTATGAAGGATTGTCGTGATTACTTCCAAGAAACAAATA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 AGGCTTATCCGCTGGAAGCAATTATGAAGGATTGTCGTGATTACTTCCAAGAAACAAATA 1004
Query 1020 GACGAGTCTCTTTCGAATATGCCCTTCTAGCTGGAGTCAATGATCAAGTTGAGCATGCGG 1079
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1005 GACGAGTCTCCTTCGAATATGCCCTTCTAGCTGGAGTCAATGATCAAGTTGAGCATGCAG 1064
Query 1080 TGGAACTTGCAGAGCTACTCCGTGAATGGGGTAAAACTTATCACGTAAATTTGATACCTT 1139
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TGGAACTTGCAGAACTACTCCGTGAATGGGGTAAAACTTATCACGTAAATTTGATACCTT 1124
Query 1140 ACAACCCGATAGAGGGATCAGAGTACCAGCGACCTTACAAGAAAGCGGTCCTAGCGTTTG 1199
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1125 ACAACCCGATAGAAGGATCAGAGTACAAGCGACCTTACAAGAAAGCGGTCCTAGCGTTTG 1184
Query 1200 CAGCTGCGTTGGAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACTTGATG 1259
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1185 CATCTGCGTTGGAGTCGCGTAAGATAACAGCAAGCGTAAGACAAACAAGAGGACTTGATG 1244
Query 1260 CAAGTGCTGCTTGTGGTCAGCTGAGGAATAAGTTTCAGAAAAGCCCTTT-GCTTACTGAG 1318
| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1245 CGAGTGCTGCTTGTGGTCAGCTGAGGAATAAGTTTCAGAAAAGCCCTTTAG-TTACTGAG 1303
Query 1319 ACGGATAGTCAAGAGTCTCAGCCAGATGCAGAAGCTGTCGCTTGTTGATGTCCTGGATTG 1378
|||||| |||||||||||||||||| ||||||||||||||| ||||||| |||| |||||
Sbjct 1304 ACGGATGGTCAAGAGTCTCAGCCAGCTGCAGAAGCTGTCGCGTGTTGATTTCCTTGATTG 1363
Query 1379 CACAAATTTCCGGTTTTGCCATTGGATGGCTCTGTTCAACTTTGGTTTGAAGAGGAGACA 1438
||||||| ||||||||||||||||||| ||||||| |||||||| |||| ||||||||||
Sbjct 1364 CACAAATCTCCGGTTTTGCCATTGGATCGCTCTGTACAACTTTGTTTTGGAGAGGAGACA 1423
Query 1439 TGGCTCAATCACGGAAAG-GAAAAATCGTCGTGAGGGTTGGTTGGTCAGTGTGCAACCAA 1497
||||||||| ||| |||| ||||| | | ||| ||||||||||||||||||||||||| |
Sbjct 1424 TGGCTCAATGACGAAAAGTGAAAATT-GCCGTTAGGGTTGGTTGGTCAGTGTGCAACCGA 1482
Query 1498 GGATGAAGAGATTGAAGCACGTTTGAGATGTGACG-ACTTTGACGATAGGTGTGATGATA 1556
|||||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||||
Sbjct 1483 GGATGAAGAGATTGAAGCACGTTTGAGAAGTGA-GTACTTTGACGATAGATGTGATGATA 1541
Query 1557 TTTACTTTGGTTAATAATTATGACAAGGGAACTAACTTAAAGTATTGTT 1605
| ||||||||| |||| |||||||||| |||||||||||||| |||||
Sbjct 1542 T--ACTTTGGTTTATAACTATGACAAGGTAACTAACTTAAAGTGTTGTT 1588
> Ahg914114 jgi|Araly1|914114|Al_scaffold_0001_4368
Length=294
Score = 368 bits (199), Expect = 7e-101
Identities = 247/269 (92%), Gaps = 8/269 (3%)
Strand=Plus/Plus
Query 1137 CTTACAACCCGATAGAGGGATCAGAGTACCAGCGACCTTACAAGAAAGCGGTCCTAGCGT 1196
|||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 29 CTTACAACCCGATAGAAGGATCAGAGCAGAAGCGACCTTACAAGAAAGCGGTCCTAGCGT 88
Query 1197 TTGCAGCTGCGTTGGAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACTTG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 TTGCAGCTGCGTTGGAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACTTG 148
Query 1257 ATGCAAGTGCTGCTTGTGGTCAGCTGAGGAATAAGTTTCAGAAAAGCCCTTTGCTTACTG 1316
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct 149 ATGCGAGTGCTGCTTGTGGTCAGCTGAGAAATAAGTTTCAGAAAAGCCCTTTACTTGCTG 208
Query 1317 AGACGGATAGTCAAGAGTCTCAGCCAGATGCAGAAGCTGTCGCTTGTTGATGTCC-TGGA 1375
|||| ||| ||||||||||||| ||||| ||| | |||||||| |||||||| || ||||
Sbjct 209 AGACTGATGGTCAAGAGTCTCAACCAGAAGCA-A-GCTGTCGCATGTTGATG-CCATGGA 265
Query 1376 TTGCACAAAT-TTCCGGTTTTGCCATTGG 1403
|| |||||| ||| |||||||||| |||
Sbjct 266 TT--ACAAATCTTC-GGTTTTGCCACTGG 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63686889640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5