BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39690.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482989 jgi|Araly1|482989|fgenesh2_kg.4__2049__AT2G39690.2 2436 0.0
> Ahg482989 jgi|Araly1|482989|fgenesh2_kg.4__2049__AT2G39690.2
Length=1656
Score = 2436 bits (1319), Expect = 0.0
Identities = 1482/1560 (95%), Gaps = 13/1560 (1%)
Strand=Plus/Plus
Query 30 AGAGACTAGAGGAAGAAGAAGCAGTGACTAGAACTTTACGAGTTGCTTTTGATGGCTCTA 89
||||||||||||||||||||||||| | |||||||||||||| |||||||||||| ||||
Sbjct 69 AGAGACTAGAGGAAGAAGAAGCAGTAAGTAGAACTTTACGAGCTGCTTTTGATGGTTCTA 128
Query 90 TTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGTTTTCTGAGCTCATAC 149
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 129 TTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGTTTTCCGAGCTTATAC 188
Query 150 AAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTCTAGACCGAAAAATCGAGGAGCTAA 209
||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 189 AAGAATTAGCCGTCGTGGAGGCAGAGATTCTTTGTCTAGACCGAAAAATCGAGGAGCTAA 248
Query 210 AGCTTAAACTGTATTCCGAACAGAGACAAACGCAAGAGATACAATTGCAGATGACCGAGC 269
||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||
Sbjct 249 AGCTTAAACTGTATTACGAACAGAGACAAACGCAAGAGATGCAA-T-----TGACCGAGC 302
Query 270 AGAAGAGGACATTGGCAAGACAGAGCCATGTGAGACAGAGTACTCTGCCACTAAGACATG 329
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 303 AGAAGAGGACATTGGCAAGACAGAGCCATGTGAGACAGAGTACTTTGCCACTAAGACATG 362
Query 330 ATCTTCATCAACGATCTTTGTCTCATTGTTACCAACGTTCTACACTAGACACTGCCTCAA 389
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 363 ATCTTCATCAACGATCTTTGTCTCATTGCTACCAACGTTCTACTCTAGACACCGCCTCAA 422
Query 390 CTACTCATTCAAGACTCTCATTCTCTTACGCTCCTGATTTCTTGGATGCCACTTCTTCAG 449
| ||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 423 CAACTCATTCAAGGCTCTCATTTTCTTATGCTCCTGATTTCTTGGATACCACTTCTTCAG 482
Query 450 GTGGCTTCACAGACGAATTTGATGGAGTCA-CGAGGATGCAGATGGGTAGAGTAAGAAAA 508
|| |||||||||| |||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 483 GTTGCTTCACAGATGAATTTGATGCAGT-ATCGAGGATGCAGATGGGTAGAGTAAGAAAA 541
Query 509 GGGCTTCGACTTGTTGAAGCAAAGACCAAA-GACGACCCAAACGAAGTATCAGAACAACT 567
|||||||||||||| |||||||| | |||| ||||| |||||||||||||| ||||||||
Sbjct 542 GGGCTTCGACTTGTGGAAGCAAA-AACAAAGGACGATCCAAACGAAGTATCTGAACAACT 600
Query 568 CATCAACTGTCTTATAGGCATTTACTTGGAACTCAATCATGTTTCATCAAAGACCAAAGG 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATCAACTGTCTTATAGGCATTTACTTGGAACTCAATCATGTTTCATCAAAGACCAAAGG 660
Query 628 GGATGTCTCGCTCTCAAGAAGGCCATCTTCTTGTAGCCGGAAATCAAACACATATAGTTA 687
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 GGATGTCTCGCTTTCGAGAAGGCCCTCTTCTTGTAGCCGGAAATCAAACACATATAGTTA 720
Query 688 TTATCAAAATGCAATGAATCTTGATCCTTATCACGTATTGCCAGACTCGAGCGGAGGAGT 747
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 721 TTATCAAAATGCAATGAATCTTGATCCTTATCACGTATTGCAAGACTCAAGCGGAGGAGT 780
Query 748 CACCAGAGACATTGGCCCTTACAAGAACTTCATCCACATTTCAAGAAGTTCCATCGATGT 807
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 781 CACCAGAGACATTGGCCCTTACAAGAACTTCATCCACATTTCAAGAAGTTCTATCGATGT 840
Query 808 GACACATTTCACCCATTATTGTTCACCGGCTGTTCCACGCTTGAGCGTTTTGATGGAGAA 867
||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 841 GACTCGTTTCACCCATTATTGTTCACCGGCTGTTCCACGCTTGAGTATTTTGATGGAGAA 900
Query 868 ATTATCGGAGGTAGATTTGAGTTTTTTGACCTACAAGCAAAAACTAGCCTTCTGGATCAA 927
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 901 ACTATCGGAGGTAGATTTGAGTTTTTTGACCTACAAGCAAAAACTCGCCTTCTGGATCAA 960
Query 928 TATCTACAACGCATGTATCATGCATGCATTTCTTGAGTATGGGTTACCATCGTCACACAA 987
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 961 TATCTACAACGCATGTATCATGCATGCTTTTCTTGAGTATGGGTTACCATCATCACACAA 1020
Query 988 TAGACTACTTACCTTGATGAACAAGGCTTCACTCAACGTAGGTGGCATAGTCCTCAACGC 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TAGACTACTTACCTTGATGAACAAGGCTTCACTCAACGTAGGTGGCATAGTCCTCAACGC 1080
Query 1048 TTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT--G-ACTCGCT 1104
|||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 1081 TTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAACATAAGGACTCGCT 1140
Query 1105 TGACGAGAAAGAAACGCTCCTTCGTCACACTTACGGTTTAGGATATTCAGAGCCCAATGT 1164
||| ||||||||||| ||||| || || ||||| ||||||||||||||||||||||| ||
Sbjct 1141 TGATGAGAAAGAAACTCTCCTGCGACATACTTATGGTTTAGGATATTCAGAGCCCAACGT 1200
Query 1165 GACATTTGCACTTTGCCGTGGAAGTTGGTCTTCACCAGCACTAAGAGTCTATACAGCAGA 1224
||||||||| ||||| || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1201 GACATTTGCGCTTTGTCGCGGAAGTTGGTCTTCACCAGCACTTAGAGTTTATACAGCAGA 1260
Query 1225 TGAAGTGGTGAATGATTTAGGAAGAGCAAGAGTGGAATATCTAGAAGCTTCTGTGGGTGT 1284
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1261 GGAAGTGGTGAATGATTTAGGAAGAGCAAGAGTGGAATATCTAGAAGCTTCCGTGGGTGT 1320
Query 1285 TTCAAGCAAGAAAAAGATTGTGGTTCCACAGCTTCTGCAATGGCACATGAAAGATTTTGC 1344
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTCTAGCAAGAAAAAGATTGTGGTTCCACAGCTTCTGCAATGGCACATGAAAGATTTTGC 1380
Query 1345 AGATGATATTGAATCTCTTTTGGAATGGATCTATAGCCAGTTGCCTCGATCAGGGAACCT 1404
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1381 AGATGATATTGAATCCCTTTTGGAATGGATCTATAGCCAGTTACCTCGATCAGGCAACCT 1440
Query 1405 AAAGGGCATGATTATGGAATGTCTAAAGAGAAAAGCAAAAGTTCCTTTAGCTAAAATTGT 1464
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||
Sbjct 1441 AAAGGGCATGATTATGGAATGTTTAAAGAGAAAAACAAAAGTTCCTTTAGCTAAAATGGT 1500
Query 1465 AGAGATTCAAACATATGGACACGAATTTCGTTACTTGTTGTCATTGTAAACATGAGAGGT 1524
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1501 AGAGATTCAAACATATGGACACGAATTTCGTTACTTGTTGTCATTATAAACATGAGAGGT 1560
Query 1525 CCTTATCTAGAATAGAATAACAATGTTTGGTAACTTCTCTCTCGGATGTACACATTCTCG 1584
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1561 CCTTATCTAGAATAGAATAACAATGTTTGGTAACTTCTCTCACGGATGTACACATTCTCG 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5