BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39700.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482991 jgi|Araly1|482991|fgenesh2_kg.4__2051__AT2G39700.1 1951 0.0
Ahg938484 jgi|Araly1|938484|scaffold_502675.1 638 0.0
> Ahg482991 jgi|Araly1|482991|fgenesh2_kg.4__2051__AT2G39700.1
Length=1280
Score = 1951 bits (1056), Expect = 0.0
Identities = 1231/1309 (94%), Gaps = 38/1309 (3%)
Strand=Plus/Plus
Query 21 AACAAACCTAACTCTTTCTCTATACAAGAGCGCAAGCTCGAAGGCGCTCTTGTTCTTTCT 80
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1 AACAAACCTAACTCTTTCTCTATACAAGAGCGCAACCTCGAAAGCGCTCTTGTTCTTTCT 60
Query 81 TCATTTTCTCCTTAACAATCACCCTCATAGTAACTTTAAAACTCT-CTGTTTCTAGT-AA 138
||||||||||||||| ||||||||||||||||| |||| |||||| || ||| |||| ||
Sbjct 61 TCATTTTCTCCTTAAGAATCACCCTCATAGTAATTTTAGAACTCTCCT-TTT-TAGTAAA 118
Query 139 TTCACACACAAAATGGCTATTAAACTAGCAATTCTATTTACCACATTTGTTCTTTTTAGC 198
|| |||| |||||||||||||||||||| |||||| |||||||||||||| |||||||||
Sbjct 119 TT-ACACTCAAAATGGCTATTAAACTAGTAATTCTCTTTACCACATTTGTCCTTTTTAGC 177
Query 199 CTCGCCGACGCTAGAATCCCCGGTATTTACTCCGGCGGCGCATGGCAAAACGCACACGCC 258
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 178 CTCGCCGACGCTAGAATCCCCGGCGTTTACTCCGGCAGCGCATGGCAAAACGCACACGCC 237
Query 259 ACTTTTTACGGTGGCAGCGACGCCTCCGGCACAATGGGAGGAGCTTGTGGTTACGGTAAC 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ACTTTTTACGGTGGCAGCGACGCCTCCGGCACAATGGGAGGAGCTTGTGGTTACGGTAAC 297
Query 319 CTATACAGCCAAGGGTACGGGACCAACACGGCTGCTTTGAGTACGGCGCTGTTTAACAAT 378
|||||||||||||| || || ||||||||||| || ||||| ||||||||||||||||||
Sbjct 298 CTATACAGCCAAGGCTATGGTACCAACACGGCAGCATTGAGCACGGCGCTGTTTAACAAT 357
Query 379 GGTATGAGTTGTGGAGCCTGCTTTGAGCTAAAATGCGCCAACGACCCTCAATGGTGTCAC 438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 GGTATGAGTTGTGGAGCCTGCTTTGAGCTAAAATGCGCCAACGACCCTCAATGGTGCCAC 417
Query 439 TCAGGTAGTCCTTCGATCCTCATCACCGCAACCAATTTCTGCCCACCAAACTTGGCTCAG 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCAGGTAGTCCTTCGATCCTCATCACCGCAACCAATTTCTGCCCACCAAACTTGGCTCAG 477
Query 499 CCTAGCGACAACGGAGGATGGTGCAACCCACCACGTGAACACTTT-GACCTAGCCATGCC 557
||||||||||||||||||||||| ||||| || |||||||| ||| || |||||||||||
Sbjct 478 CCTAGCGACAACGGAGGATGGTGTAACCCGCCTCGTGAACA-TTTCGATCTAGCCATGCC 536
Query 558 TGTCTTCCTTAAGATCGCTCAATATCGCGCCGGCATTGTCCCCGTCTCATACCGCAGGGT 617
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 537 TGTCTTCCTCAAGATCGCTCAATATCGTGCGGGCATTGTCCCCGTCTCATACCGCAGAGT 596
Query 618 GCCATGTAGAAAGAGAGGAGGCATAAGGTTCACAATCAACGGTCACCGTTACTTCAACTT 677
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCCTTGTAGAAAGAGAGGAGGGATAAGGTTCACAATCAACGGTCACCGTTACTTCAACTT 656
Query 678 GGTTCTGATCACTAACGTGGCTGGAGCAGGAGACATCGTGAGGGCTAGTGTGAAAGGATC 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 GGTTCTGATCACTAACGTGGCTGGAGCAGGAGACATCGTGAGGGCTAGTGTGAAAGGTTC 716
Query 738 ACGGACTGGTTGGATGAGTTTGAGCAGAAACTGGGGACAAAACTGGCAATCTAATGCTGT 797
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 717 ACGGACTGGTTGGATGAGTTTGAGCAGGAACTGGGGACAAAACTGGCAATCTAATGCTGT 776
Query 798 TTTGGTTGGTCAAG-CACTCTCTTTCCGTGTCACAGGCAGTGACCGTAGAACATCTACTT 856
||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTTGGTTGGTC-AGTCACTTTCTTTCCGTGTCACAGGCAGTGACCGTAGAACATCTACTT 835
Query 857 CCTGGAACATGGTTCCTTCTAACTGGCAGTTTGGTCAAACCTTTGTCGGGAAGAATTTCA 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CCTGGAACATGGTTCCTTCTAACTGGCAGTTTGGTCAAACCTTTGTCGGGAAGAATTTCA 895
Query 917 GGGTTTAAGGCGAGTTTCGAGAAACTAAAATTTGGAGGAAATTCGAGAAATT-AAAGTGG 975
||||||||||||||||||||||| | |||||||||||||||| ||| ||||| |||||||
Sbjct 896 GGGTTTAAGGCGAGTTTCGAGAAGCAAAAATTTGGAGGAAAT-CGA-AAATTTAAAGTGG 953
Query 976 TTCGAGACAAAAGAAAACTCTCCGCTAATTTCGCTATTCCTCCTCCtttttttttACTAA 1035
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 954 TTCGAGACAAAAGAAAACTCTCCGCTAATTTCGCTATTCCTCCT--TTTTTTT---CTAA 1008
Query 1036 ATTTTATATATGGAAAGGAGAGAAAAATCAGGGGAAAGTATCtttgacttttgtgtgtgt 1095
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 ATTTTACATATGGGAAGGAGAGAAAAATCAGGGGAAAGTATCTTTGACTTTTGTGTGTGT 1068
Query 1096 tttcactttttt----aatgtttttttttttGGGTTTGGTGTTTTAATTGTGAGTGATAA 1151
|||||||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1069 TTTCACTTTTTTTTTTAATGTTCTTTTTTTTGGGTTTGGTGTTGTAATTGTGAGTGATA- 1127
Query 1152 AGGGGGAAATGAGGGAGAAAGAGAAAGTGAGTAGCTGAAGTGGCTGTGAGAACATTTTGT 1211
| | || | | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1128 -G----A---GA---A-A--GAGAAAGTGAGTAGCTGAAGTGGCTGTGAGAAAATTTTGT 1173
Query 1212 AACAGCCCGCAGCTATTAAAGTATTTTACATGGTTTGGTTGTAAGTTACAACTTGTAACG 1271
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1174 AACAGCCCGCAGCTATTAAAGTATTTTACATG-TTTGGTTGTAAGTTACAACTTGTAACG 1232
Query 1272 TTTAATCTCGTGTAATCTTAAAACATGGTTGTATTATTGATACTTAATA 1320
|||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1233 TTTAATCTCGTGTAATCT-AAAACATGGTTGTGTTATTGATACTTAATA 1280
> Ahg938484 jgi|Araly1|938484|scaffold_502675.1
Length=823
Score = 638 bits (345), Expect = 0.0
Identities = 608/736 (83%), Gaps = 14/736 (2%)
Strand=Plus/Plus
Query 196 AGCCTCGCCGACGCTAGAATCCCCGGTATTTACTCCGGCGGCGCATGGCAAAACGCACAC 255
||| || ||||||| ||||||| || | ||||| |||||| | ||||||| ||| |||
Sbjct 75 AGCTTCACCGACGCCGGAATCCCTGGCGTCTACTCAGGCGGCTCTTGGCAAACCGCTCAC 134
Query 256 GCCACTTTTTACGGTGGCAGCGACGCCTCCGGCACAATGGGAGGAGCTTGTGGTTACGGT 315
|||||||| || ||||||| ||| || ||||| |||||||| || || ||||| |||||
Sbjct 135 GCCACTTTCTATGGTGGCAACGATGCTTCCGGAACAATGGGTGGCGCGTGTGGATACGGG 194
Query 316 AACCTATACAGCCAAGGGTACGGGACCAACACGGCTGCTTTGAGTACGGCGCTGTTTAAC 375
|| || ||||| ||||| ||||| || |||||||| || |||| || ||| |||| |||
Sbjct 195 AATCTGTACAGTCAAGGATACGGAACAAACACGGCGGCCCTGAGCACAGCGTTGTTCAAC 254
Query 376 AATGG-TATGAGTTGTGGAGCCTGCTTTGAGCTAAAATGCGCCAACGACCCTCAATGGTG 434
| ||| | || || || || |||||||| | ||||| | || || ||| |||||||
Sbjct 255 AGTGGCCA-AAGCTGCGGCGCATGCTTTGAAATCAAATGTGTTAATGATCCTAAATGGTG 313
Query 435 TCACTCAGGTAGTCCTTC-GATCCTCATCACCGCAACCAA-TTTCTGCCCACCAAACTTG 492
|||| | |||| |||||| | || || | ||||||||||| ||| ||||| ||||||||
Sbjct 314 TCACCCGGGTAATCCTTCTG-TCTTCGTAACCGCAACCAACTTT-TGCCCTCCAAACTTA 371
Query 493 GCTCAGCCTAGCGACAACGGAGGATGGTGCAACCCACCACG-TGAACACTTT-GACCTAG 550
|| || ||||||||||| || |||||||||||||| ||||| | || ||| ||||| |
Sbjct 372 GCCCAACCTAGCGACAATGGCGGATGGTGCAACCCGCCACGCT-CTCA-TTTCGACCTCG 429
Query 551 CCATGCCTGTCTTCCTTAAGATCGCTCAATATCGCGCCGGCATTGTCCCCGTCTCATACC 610
||||||| || ||||| ||||||||| | ||||| ||||||||||| ||| | || ||||
Sbjct 430 CCATGCCCGTTTTCCTCAAGATCGCTGAGTATCGTGCCGGCATTGTTCCCATATCTTACC 489
Query 611 GCAGGGTGCCATGTAGAAAGAGAGGAGGCATAAGGTTCACAATCAACGGTCACCGTTACT 670
|||||||| ||||||| ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 490 GCAGGGTGGCATGTAGGAAGAGTGGAGGGATAAGGTTCACGATCAACGGTCACCGTTACT 549
Query 671 TCAACTTGGTTCTGATCACTAACGTGGCTGGAGCAGGAGACATCGTGAGGGCTAGTGTGA 730
|||||||||| ||||| || || ||||| ||||||||||| ||| ||||| | || ||||
Sbjct 550 TCAACTTGGTGCTGATAACGAATGTGGCCGGAGCAGGAGATATCCTGAGGACGAGCGTGA 609
Query 731 AAGGATCACGGACTGGTTGGATGAGTTTGAGC-AGAAACTGGGGACAAAACTGGCAATCT 789
|||| ||| |||||||||||||||||| | | || ||||||||||| |||||||| |||
Sbjct 610 AAGGTTCAAAGACTGGTTGGATGAGTTTAA-CTAGGAACTGGGGACAGAACTGGCAGTCT 668
Query 790 AATGCTGTTTTGGTTGGTCAAG-CACTCTCTTTCCGTGTCACAGGCAGTGACCGTAGAAC 848
||||||||| | |||||||| | |||| || ||||||||||||| |||||||||||||||
Sbjct 669 AATGCTGTTCTCGTTGGTCA-GTCACTTTCCTTCCGTGTCACAGCCAGTGACCGTAGAAC 727
Query 849 ATCTACTTCCTGGAACATGGTTCCTTCTAACTGGCAGTTTGGTCAAACCTTTGTCGGGAA 908
|||||||| |||||||| | |||||| |||||||||||||| |||||||||||||| ||
Sbjct 728 CTCTACTTCATGGAACATCGCTCCTTCGAACTGGCAGTTTGGACAAACCTTTGTCGGAAA 787
Query 909 GAATTTCAGGGTTTAA 924
|||||||||||| |||
Sbjct 788 GAATTTCAGGGTCTAA 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5