BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39705.1
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482992 jgi|Araly1|482992|fgenesh2_kg.4__2052__AT2G39705.1 891 0.0
> Ahg482992 jgi|Araly1|482992|fgenesh2_kg.4__2052__AT2G39705.1
Length=686
Score = 891 bits (482), Expect = 0.0
Identities = 650/724 (90%), Gaps = 40/724 (6%)
Strand=Plus/Plus
Query 1 GCTGACTCAAATCTCCAAACTCCTAGAAAATCTCCAAATTCCCAAGTTTGTTTCTTTAAT 60
||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| |
Sbjct 1 GCTGACTCAAATCTCCAAACTCCGAGAAAATCTCCAAATTCCTAAGTTTGTTT-TTT-TT 58
Query 61 CTCTCTATTCCTCACAAACTCATCAATTTCCAACGAACCCACAAGATCAAATATTTATCC 120
| ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 59 ATATCTATTCCTCACAAATTCGTCAATTTCCAACGAACCCACAAGATAAAATATTTATCC 118
Query 121 TTTTTTCCTCGTTGAGATCGATcacacacacacaA-ATCTGAAATCTGAGATCTTTAACA 179
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 119 TTTTTTCCTCGTTGGGATCGATCACACACACACAACATCTGAAATCTGAGATCTTTAACA 178
Query 180 TCAATGGCGTCATCGTCTAGCCTGACTCGATCGGGAAGCGTCCACCTAGACGAGAAGTGG 239
||||||||||| || || ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 179 TCAATGGCGTCGTCTTCAAGCCTGACTCGATCGGGAAGCGTTCACCTAGATGAGAAGTGG 238
Query 240 AAACTGTCAAAGAAAGACGGCGGCGCGTCGAGGATCACGCGCTCTTCATCGACCTCATCT 299
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 239 AAACTGTCGAAGAAAGACGGCGGCGCGTCGAGAATCACGCGCTCTTCATCGACCTCATCT 298
Query 300 TCTTCCTTCAACGGCAAGAAACAGGGGAGATGTGCTTTTACGAGAAAGTGTGCAAGATTG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCTTCCTTCAACGGCAAGAAACAGGGGAGATGTGCTTTTACGAGAAAGTGTGCAAGATTG 358
Query 360 GTTAAAGAACAGAGAGCTCGTTTCTACATCATGCGTCGATGCGTAATCATGCTTATTTGC 419
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 359 GTTAAAGAACAGAGAGCTCGTTTCTATATCATGCGTCGATGCGTTATCATGCTTATTTGC 418
Query 420 TGGAGAGATAATTACTCTGATTCTTaaaaaaaaaaaaaaaaaCCAAATCTCTCTCTGTTT 479
||||||||||||||||||||||||||||||||| |||| | | ||||||||||||
Sbjct 419 TGGAGAGATAATTACTCTGATTCTTAAAAAAAACAAAATA--CTAAATCTCTCTCT---- 472
Query 480 CTTGATTTCTCTGTTTCTATGTTTCTGAAACCAAAGTAGATAGTTATAATACATGTACAT 539
||| | || | | || || |||||||||| ||| ||||||||||||
Sbjct 473 CTT--T--CT--G-----A--------AA-CCGAAGTAGATAGATATGATACATGTACAT 512
Query 540 AAAGGGTTCTGTTTTCTGTTGGTT-TCTACTTCTTTAGATGAACTTTAGATTTTGTTTAT 598
|| |||||||||||||| ||| || | |||||||||||||||| |||||||||||||||
Sbjct 513 AA-GGGTTCTGTTTTCTTTTG-TTGTGTACTTCTTTAGATGAATTTTAGATTTTGTTTAC 570
Query 599 GATTCTGGTTAGAGAAGCTTTGTTTAAGATCAGTTCCAGTGTGAAGGAAAATaaaaaaaa 658
|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||
Sbjct 571 CATTCTGGTTAGAGAAGCTTTGTTTAAGATCAGTTTCAGCGTGAAGGAAAA-AAAAATAA 629
Query 659 aaCGAAGAACAGACAAATTGTAAAATATTTTAATCAAGTATAAAATAGTGAATTAGATTC 718
||| |||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 630 ---GAA---CAGACAAATTGTAAAATAAGTTAAT-AAGTATAAAATAGTGAATTAGATTC 682
Query 719 GTCT 722
||||
Sbjct 683 GTCT 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26571673149
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5