BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39710.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482993 jgi|Araly1|482993|fgenesh2_kg.4__2053__AT2G39710.1 2030 0.0
> Ahg482993 jgi|Araly1|482993|fgenesh2_kg.4__2053__AT2G39710.1
Length=1451
Score = 2030 bits (1099), Expect = 0.0
Identities = 1301/1399 (93%), Gaps = 11/1399 (1%)
Strand=Plus/Plus
Query 23 TCATCATTATCTCTTTCAAAAAAT-TTTCTTCGAATCTCAGTTCTACTTCTTATTTTCCC 81
||||||| ||||||||| ||| | ||||||||||||||| |||||||||| ||||||||
Sbjct 10 TCATCATCATCTCTTTC-AAATTTGTTTCTTCGAATCTCAATTCTACTTCTCATTTTCCC 68
Query 82 TCTAACGTTCTGCAAAACATCTTCTACAAATCAAACACTACTCTTCTCTCTCAAAACACA 141
||| ||||| ||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 69 TCTCACGTTATGCAAAACATCTTCTTCAGATCAAACACTACTCTTCTCTCTCAAAACACA 128
Query 142 GAAACTTCCTCAGTCTTCTTCAGACAAGCTTTCATTCAGACACAATGTTACTCTCACCGT 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 129 GAAACTTCCTCAGTCTTCTTCAGACAAGCTTTCATTCAGACACAATGTTACTCTCACGGT 188
Query 202 CACTCTCGCCGTCGGCGATCCACCTCAAAATATCTCGATGGTTCTTGATACCGGAAGCGA 261
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 189 CACTCTCGCCGTCGGCTCTCCACCGCAAAATATCTCGATGGTTCTTGATACCGGAAGCGA 248
Query 262 GCTCTCATGGCTTCACTGCAAGAAATCTCCAAACTTAGGATCCGTTTTTAACCCGGTTTC 321
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GCTTTCATGGCTTCACTGCAAGAAATCTCCAAACTTAGGATCCGTTTTTAACCCGGTTTC 308
Query 322 ATCCTCTACGTACTCCCCTGTGCCTTGCTCCTCACCAATTTGCAGGACCCGTACCCGGGA 381
||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||||
Sbjct 309 ATCCTCTACGTACTCTCCAGTACCTTGCTCCTCACCAATTTGCAGGACCCGGACCCGGGA 368
Query 382 TTTACCCATACCCGCTTCATGCGATCCGAAGACCCATCTCTGCCACGTGGCTATCTCCTA 441
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 369 TTTACCCATACCCGCTTCATGCGATCCGAAGACCCATCTCTGTCACGTGGCAATCTCTTA 428
Query 442 CGCTGACGCTACATCAATCGAAGGCAACTTGGCTCATGAGACGTTCGTAATCGGGTCTGT 501
| |||||||||| ||||| ||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 429 CTCTGACGCTACCTCAATTGAAGGTAACTTAGCTCACGACACGTTCGTAATCGGGTCTGT 488
Query 502 GACCCGACCCGGTACTTTATTCGGGTGTATGGACTCAGGTTTAAGCTCCAATTCGGAGGA 561
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 489 GACCCGACCCGGTACCTTATTCGGGTGTATGGACTCAGGTTTAAGCTCTGATTCGGAGGA 548
Query 562 AGATGCTAAATCGACCGGTTTAATGGGAATGAACCGGGGATCTTTATCTTTTGTTAACCA 621
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 AGACGCTAAATCGACCGGTTTAATGGGAATGAACCGGGGATCTTTATCTTTTGTTAACCA 608
Query 622 GCTGGGTTTCTCAAAATTTTCGTATTGCATATCCGGTTCAGATTCCTCCGGTTTTTTGCT 681
||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 609 GCTAGGTTTCTCAAAATTCTCGTATTGCATCTCCGGTTCAGATTCCTCCGGTATTTTGCT 668
Query 682 TCTCGGTGACGCGTCCTACTCCTGGCTCGGTCCAATCCAATATACGCCTCTGGTTCTACA 741
||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||| ||
Sbjct 669 TCTCGGTGACGCGTCTTATTCCTGGCTCGGTCCAATCCAATACACGCCTTTGGTTCTCCA 728
Query 742 ATCGACGCCGTTACCTTATTTCGACCGGGTTGCTTACACGGTCCAATTAGAAGGAATCCG 801
| |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AACGACACCATTACCGTATTTCGACCGGGTTGCTTACACGGTCCAATTAGAAGGAATCCG 788
Query 802 GGTCGGGTCAAAGATACTTTCTTTACCGAAATCTGTATTCGTACCGGATCATACCGGAGC 861
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 789 GGTTGGGTCAAAGATACTTTCTTTACCGAAATCCGTATTCGTACCGGACCATACCGGAGC 848
Query 862 AGGTCAGACGATGGTGGATTCAGGTACCCAATTTACGTTCCTAATGGGTCCGGTTTACAC 921
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 849 CGGTCAGACCATGGTGGATTCAGGTACACAATTTACGTTCCTAATGGGTCCGGTTTACAC 908
Query 922 TGCCTTAAAAAACGAGTTTATTACGCAAACCAAATCGGTTCTCAGGCTTGTAGACGACCC 981
||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 909 TGCCTTAAAAAACGAGTTTATCGCGCAAACCAAATCGGTTCTCAGAATAGTAGACGACCC 968
Query 982 GGATTTCGTGTTCCAAGGGACAATGGACCTTTGTTACAAGGTTGGGTCAACGACACGGCC 1041
| |||| ||||||||||||||||||||||| |||||| |||||| || | || |||||
Sbjct 969 GAATTTTGTGTTCCAAGGGACAATGGACCTATGTTACCGGGTTGGATCGTCAACCCGGCC 1028
Query 1042 CAATTTCTCGGGTTTACCCATGGTTAGTTTAATGTTCCGTGGCGCGGAGATGAGTGTGTC 1101
||||||| | ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1029 CAATTTCACAGGTTTACCCGTGATTAGTTTAATGTTCCGTGGCGCGGAGATGAGTGTGTC 1088
Query 1102 GGGTCAGAAACTGTTGTACCGGGTAAACGGAGCCGGGTCGGAAGGAAAAGAAGAAGTATA 1161
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1089 GGGTCAGAAACTGTTGTACCGGGTAAACGGAGCCGGGTCGGAAGGAAAAGAGGAAGTGTA 1148
Query 1162 TTGCTTCACGTTTGGGAACTCTGATCTTTTGGGGATAGAAGCATTTGTTATAGGTCACCA 1221
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1149 TTGCTTCACATTTGGAAACTCTGATCTTTTGGGAATAGAAGCATTTGTTATAGGTCACCA 1208
Query 1222 TCATCAGCAAAACGTGTGGATGGAGTTTGATTTAGCTAAATCAAGGGTTGGTTTCGCTGG 1281
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1209 TCATCAGCAAAACGTGTGGATGGAGTTTGATTTAGCTAAATCAAGGGTTGGTTTTGCTGG 1268
Query 1282 TAACGTCAGATGTGATTTAGCTAGTCAACGGCTCGGATTAAGAGATTGATAGGACTTGTT 1341
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 TAACGTTAGATGTGATCTAGCTAGTCAACGGCTCGGATTAAGAGATTGATAGGACTTGTT 1328
Query 1342 TAAGTCTTCTGTGTCGTGTGTGACATGAGAATATCTTCTAGACCATTGATACGTTTTTAT 1401
|||||| || | ||| | | |||||||||| |||||||||| |||| ||| |||
Sbjct 1329 TAAGTC----GTAT-GTG-GAAA-ATGAGAATATTTTCTAGACCAA--ATACATTTATAT 1379
Query 1402 AGTTTTGTGAGTATAGCTT 1420
|||||||| || |||||||
Sbjct 1380 AGTTTTGTAAGGATAGCTT 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5