BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39720.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934736 jgi|Araly1|934736|scaffold_402724.1 1805 0.0
> Ahg934736 jgi|Araly1|934736|scaffold_402724.1
Length=1243
Score = 1805 bits (977), Expect = 0.0
Identities = 1166/1252 (93%), Gaps = 34/1252 (3%)
Strand=Plus/Plus
Query 92 TCTTTCAGATCCCTATTCTCATGGCTTCTGGATCTTACTGGTGCTATAGTTGTAGCCGAT 151
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TCTTTCAGATCCCTATTCCCATGGCTTCTGGATCTTACTGGTGTTATAGTTGTAGCCGAT 60
Query 152 TCGTTTGGGTTTCCGATTCAATCTCTTGCCCTGATTGCGACGGTGGTTTCCTCGAACTCA 211
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TCGTTTGGGTTTCCGATTCTCTCTCTTGCCCTGATTGCGACGGTGGTTTCCTCGAACACA 120
Query 212 TCCAAGAGCCTCTCGATTTCACACCTTCCGATTCCTT-cacc-ac-caccaccaccacTC 268
||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 121 TCCAAGAAACTCTCGATTTCACACCTTCCGATTCCTTCCACCGTCTCACCACCACCACTC 180
Query 269 AACATCGCAGCCCCACTCGCTTCCCTCC-TCCTTCTTCTTCTTCCTCCACCCCATCCGCT 327
|||||||||||||||||||||||||||| ||| || |||||||| || ||||| ||||||
Sbjct 181 AACATCGCAGCCCCACTCGCTTCCCTCCTTCC-TCCTCTTCTTCTTCGACCCCCTCCGCT 239
Query 328 T-C-T--A----TGCA-CGCCGATAACAGTCCCACTCCTACCATCGTTACTCGTACACGA 378
| | | | | || |||||| ||||||||||||||||||| |||||||||||| |||
Sbjct 240 TCCATGCACGCTTCCACCGCCGAGAACAGTCCCACTCCTACCACCGTTACTCGTACCCGA 299
Query 379 AGCAATCGATCTCCTAATCCAGTTATTGTTCTCCGTGGATCTGCTGCTGCTCCTTCTTCT 438
|||||||||||||||||||| |||||||||||||||||||||| | |||| | |||||
Sbjct 300 AGCAATCGATCTCCTAATCCGGTTATTGTTCTCCGTGGATCTG--G-TGCT-C--CTTCT 353
Query 439 GATGTTGTTTCCGAAGGTTTAGATCGATCTGCTTTTCAGATGTATTACGATGATGGTACT 498
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GA---TGTTTCCGAAGGTTTAGATCGATCTGCTTTTCAGATGTATTACGATGATGGTACT 410
Query 499 GATTCTGGTCTTAGACCTTTACCACCGAGTATGACTGAGTTTTTGTTAGGTTCTGGATTT 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GATTCTGGTCTTAGACCTTTACCACCGAGTATGACTGAGTTTTTGTTAGGTTCTGGATTT 470
Query 559 GATCGTTTGTTAGATCAGATTTCTCAGATCGAGCTTAACACCAATCGGAATCTTCGTTCT 618
||||| |||||||||||||| |||||||||||||||||||||||||||| || |||||||
Sbjct 471 GATCGCTTGTTAGATCAGATCTCTCAGATCGAGCTTAACACCAATCGGATTCATCGTTCT 530
Query 619 TGTGAACATCCACCGGCTTCTAAATCGGCCATTGAAGCTTTGCCTCTGATTGAAATCGAT 678
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 531 TGTGAACATCCTCCGGCTTCTAAATCGGCCATTGAAGCTTTACCTCTGATTGAAATCGAT 590
Query 679 CCGACTCATCTCTTATCGGATTCTCAATCTCATTGCGCTGTTTGCAAAGAGAATTTCGTT 738
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CCGACTCATCTCGAATCGGATTCTCAATCTCATTGCGCTGTTTGCAAAGAGAATTTCGTT 650
Query 739 TTGAAATCATCTGCTCGCGAGATGCCTTGTAATCACATCTATCATCCTGATTGTATTCTT 798
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 651 TTGAAATCATCTGCTCGTGAGATGCCGTGTAATCACATCTATCATCCTGATTGTATCCTT 710
Query 799 CCTTGGCTTGCGATTCGTAACTCTTGTCCGGTTTGCCGTCATGAGCTACCGGCGGAGGAT 858
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 711 CCTTGGCTTGCGATTCGAAACTCTTGTCCGGTTTGCCGTCATGAGCTACCGACGGAGGAT 770
Query 859 CTCACCGACGGAACCGGTG-CTGCTTTGACTGCTGTTACCGCTACTGCAGAGGAAGAGGA 917
||||||||||||| ||||| | |||||||||| | | |||||||||||||||||||||||
Sbjct 771 CTCACCGACGGAAGCGGTGGC-GCTTTGACTG-T-T-ACCGCTACTGCAGAGGAAGAGGA 826
Query 918 AGACTCAGCTGCGGGGTTAACGATTTGGAGGTTACCAGGTGGAGGATTCGCTGTAGGGAG 977
|||||| || || ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 827 AGACTCCGCGGCAGGGTTGACGATTTGGAGGTTACCAGGTGGAGGATTCGCTGTTGGGAG 886
Query 978 AATCCCTGGTGGTTGGAGAGGTGGAGATAGAATGATGCCGGTGGTTTACACGGAGGTTGA 1037
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 887 AATCCCTGGTGGTTGGAGAGGAGGAGATAGAATGATGCCGGTGGTTTACACGGAGGTTGA 946
Query 1038 TGGTGGTAGACTCGGTGATGAGAGACTTCCgagaagagtagcttggggttcgagaagagg 1097
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 947 CGGTGGTAGACTCGGTGATGAGAGACTTCCGAGGAGAGTAGCTTGGGGTTCGAGAAGAGG 1006
Query 1098 tggaagagatggtggaggtagtagagagagaggtGGTGGCTTTGCGGGTCGGATCATGAG 1157
||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1007 AGGAAGAGATGG---AGGTAGTAGAGAGAGAGGTGGCGGGTTTGCGGGTCGGATCATGAG 1063
Query 1158 GCTTTTCGGATGTTTTAGTGGATCATCTGGATCCATtgctgctgctgctgctgcATCATC 1217
|||||| |||||||||||||| |||||||||||||| |||||||||||||| ||| ||
Sbjct 1064 GCTTTTTGGATGTTTTAGTGGGTCATCTGGATCCATAGCTGCTGCTGCTGC---ATCGTC 1120
Query 1218 CGGGTCCGGGTCCAGAATTCGGGTTACTCGTAGAACCAGGTCGTTCTCTATGTTCAGTAC 1277
|| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1121 TGGATCCGGGTCGAGAATTCGGGTTACCCGTAGAACCAGGTCGTTCTCTATGTTTAGTAC 1180
Query 1278 GGCGTCGTCTTCGTCAAGGAGACGAAATTGGCTAGCGTGATTACTAGAATTA 1329
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 GGCTTCGTCTTCGTCAAGGAGACGAAATTGGCTAGCGTGATTACTAGAATTA 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5