BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39725.1
Length=602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482996 jgi|Araly1|482996|fgenesh2_kg.4__2056__AT2G39725.1 725 0.0
> Ahg482996 jgi|Araly1|482996|fgenesh2_kg.4__2056__AT2G39725.1
Length=580
Score = 725 bits (392), Expect = 0.0
Identities = 531/594 (89%), Gaps = 25/594 (4%)
Strand=Plus/Plus
Query 20 GCTCTTTCGATTTTGGAGATATTTACAGGTACGCTTGCTTTTCCCTTCACAACATCTTCT 79
|||||||||||||| ||||||||||||||||||||| | || ||| | ||||||
Sbjct 1 GCTCTTTCGATTTTTGAGATATTTACAGGTACGCTTAATCTT--CTT-----CTTCTTCT 53
Query 80 TCTTCCTGC-TCCTCTGTTTC-AAATTCCGAAAATCAGATAA--AAAATGGGAGCTTCGA 135
||||||||| | ||||| ||| ||| | | ||| || || |||||||||||||| |
Sbjct 54 TCTTCCTGCAT-CTCTG-TTCTAAAAT-CTTCCATCCGA-AAGGAAAATGGGAGCTTCCA 109
Query 136 AACTTTCCGGGATGCAAAAGCAAGTCTTGAGTCTCTACAGAGGATTTCTAAGAGCAGCTC 195
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 AACTTTCTGGGATGCAAAAGCAAGTCTTGAGTCTCTACAGAGGATTTCTAAGAGCAGCTC 169
Query 196 GTTCAAGACCAATAGAAGACAGGAAGAGAATAGAGATGATTGTGTCAACAGAGTTCCGCC 255
|||| || |||| ||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 170 GTTCTAGGCCAACAGAAGACAGGAAGAGAATAGAGATGATCGTGTCAACAGAATTCCGCC 229
Query 256 ACAACTCTAAGGAGGTCGACCGTAAGAATTTTCAGTACATCGAGTATTTGCTTCGGTTAG 315
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 230 ACAACTCTAAGGAGGTTGACCGTAAGAATTTCCAGTACATCGAGTATTTGCTTCGCTTAG 289
Query 316 GTACTAAACAGCTTGATCAACTCAAAAGCCCTGCCATAGTTAGCCTCTCCTCGATCAAGG 375
| |||||||| || ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 290 GCACTAAACAACTCGATCAACTCAAAAGCCCCGACATAGTTAGCCTCTCCTCGATCAAGG 349
Query 376 TCGTTACATCTAAAACCTGATACCTTATTTTATAGCTTGTTGCTCTAGTGACCATAGATA 435
| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 350 TTGTTACATCTAAAACCTGATACTTTATTTTATAGCTTGTTGCTCTAGTGATCATAGATA 409
Query 436 ACAAAGCTGAGGAAATTGATTCGTTTTCCTCT--TT-TTACATTGAGTTATGTATGTATG 492
|||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 410 ACAAAGA-GAGGAAATTGATTCGTTTTCCTCAAATTCTTACGTTGAGTTATGTATGTATG 468
Query 493 ATGATGGATGTTCAAG-GTC--C-ATTATAAAATAAAGAGAATTGTGATCACAATTGAAT 548
|||||||||||| ||| | | | |||||||| |||||||||||||||||||||||| |
Sbjct 469 ATGATGGATGTTTAAGAGCCAGCCATTATAAA-TAAAGAGAATTGTGATCACAATTGGA- 526
Query 549 ATATATATACACTTTCACACAATTATGTGCATCTGCTAATAGTCTAGAGATTGC 602
|||||||||||| ||||||||||||||||||||| ||||||||||||||| |||
Sbjct 527 ATATATATACACATTCACACAATTATGTGCATCTACTAATAGTCTAGAGACTGC 580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22053930442
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5