BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39760.1
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934741 jgi|Araly1|934741|scaffold_402729.1 1977 0.0
> Ahg934741 jgi|Araly1|934741|scaffold_402729.1
Length=1270
Score = 1977 bits (1070), Expect = 0.0
Identities = 1175/1227 (96%), Gaps = 2/1227 (0%)
Strand=Plus/Plus
Query 114 TTCTTCGTAATCGACGACGAAGAGATCATGAGTACCGTCGGAGGTATAGAGCAGTTGATA 173
||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 1 TTCTTCGTAATCGACGACG--GAGATCATGAGCACCGTCGGAGGTGTAGAGCAGTTGATA 58
Query 174 CCTGATTCCGTTTCAACGTCGTTCATCGAAACGGTGAACGGTTCGCACCAGTTCACGATT 233
|||||||| || || |||||||||||||| |||||||| |||||||| ||||| ||||||
Sbjct 59 CCTGATTCAGTATCGACGTCGTTCATCGAGACGGTGAATGGTTCGCATCAGTTTACGATT 118
Query 234 CAAGGTTACTCTCTAGCCAAAGGCATGAGCCCTGGGAAGTTTATACAGAGCGATATCTTC 293
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 119 AAAGGTTACTCTCTAGCCAAAGGCATGAACCCTGGGAAGTTTATACAGAGCGATGTCTTC 178
Query 294 TCCGTTGGTGGATACGATTGGGCGATTTACTTCTATCCTGATGGGAAGAACCCGGAGGAC 353
||||| |||||||||||||||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 179 TCCGTCGGTGGATACGATTGGGCGATTTACTTTTATCCCGATGGAAAGAACCCAGAGGAT 238
Query 354 CAGTCCTCGTATATCTCTTTGTTCATCGCTTTAGCGAGTGATTCTAATGATATTAGGGCT 413
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CAGTCCTTGTATATCTCTTTGTTCATCGCTTTAGCGAGTGATTCTAATGATATTAGGGCT 298
Query 414 TTGTTTGAGCTTACGCTTATGGATCAGAGTGGGAAAGGGAAACATAAGGTGCATAGTCAC 473
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTGTTTGAGCTGACGCTGATGGATCAGAGTGGGAAAGGGAAACATAAGGTGCATAGTCAC 358
Query 474 TTTGATCGGGCGCTTGAAGGTGGTCCTTATACACTTAAGTATAAAGGAAGCATGTGGGGT 533
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 359 TTTGATCGGGCGCTTGAAGGTGGACCTTATACGCTCAAGTATAAAGGAAGCATGTGGGGT 418
Query 534 TACAAACGCTTTTTCAAACGATCAGCTTTAGAAACCTCTGACTACTTAAAGGATGATTGT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TACAAACGCTTTTTCAAACGATCAGCTTTAGAAACCTCTGACTACTTAAAGGATGATTGT 478
Query 594 CTTGTCATCAATTGTACTGTTGGCGTTGTTAGAGCCCGACTCGAGGGTCCAAAACAGTAT 653
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 479 CTTGTCATCAATTGTACTGTTGGTGTTGTTAGAGCCCGACTTGAGGGTCCAAAACAGTAT 538
Query 654 GGCATTGTGCTACCCCTGTCGAATATGGGTCAGGGATTGAAAGACTTGTTAGATTCTGAA 713
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 539 GGCATTGTGCTACCCCTGTCGAACATGGGTCAGGGATTGAAAGACTTGTTAGATTCTGAG 598
Query 714 GTTGGTTGTGACATAGCTTTCCAAGTCGGAGATGAAACATACAAAGCTCACAAACTGATT 773
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTTGGTTGTGACATAGCTTTTCAAGTCGGAGATGAAACATACAAAGCTCACAAACTGATT 658
Query 774 CTCGCGGCACGCTCCCCAGTTTTTAGAGCTCAGTTTTTTGGACCAATTGGGAATAACAAT 833
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 659 CTTGCGGCACGCTCCCCAGTTTTTAGAGCTCAATTTTTTGGACCAATTGGGAATAACAAT 718
Query 834 GTGGATAGAATAGTGATAGACGACATCGAACCTTCTATCTTCAAGGCTATGCTTAGCTTC 893
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTGGATAGAATAGTGATAGAGGACATCGAACCTTCTATCTTCAAGGCTATGCTTAGCTTC 778
Query 894 ATTTACACCGATGTACTTCCTAATGTGCATGAAATTACCGGGTCAACTTCTGCCAGTTCG 953
|| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 779 ATCTACACCGATGTACTTCCTGATGTGCATGAAATTACTGGGTCAACTTCTGCCAGTTCG 838
Query 954 TTTACAAACATGATACAACATCTCTTGGCAGCTGCTGACCTCTATGACCTTGCAAGGTTA 1013
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 839 TTCACAAACATGATACAACATCTTTTGGCAGCTGCTGACCTTTATGACCTTGCAAGGTTA 898
Query 1014 AAGATATTATGTGAAGTTTTGCTATGCGAAAAACTTGATGTTGATAATGTGGCAACAACA 1073
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 899 AAGATATTATGTGAAGTTTTGCTATGCGAAAAACTCGATGTTGATAATGTGGCAACAACA 958
Query 1074 CTTGCGTTGGCTGAACAGCACCAATTCTTACAGCTCAAAGCGTTCTGCTTAGAATTTGTT 1133
|||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 959 CTTGCGCTGGCTGAACAGCACCAGTTCTTACAGCTCAAAGCGTTCTGCTTAAAATTTGTT 1018
Query 1134 GCATCTCCAGCAAACTTGGGAGCTGTAATGAAGTCCGAAGGGTTCAAGCACTTGAAACAG 1193
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1019 GCATCTCCAGCAAACTTGGGAGCTGTAATGAAATCTGAAGGGTTCAAGCACTTGAAACAG 1078
Query 1194 AGCTGTCCCACTTTGTTATCTGAGTTGCTGAACACTGTTGCAGCAGCAGATAAGAGCTCG 1253
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1079 AGCTGTCCCACTCTGTTATCTGAGTTGCTGAACACTGTTGCAGCAGGAGATAAGAGCTCG 1138
Query 1254 ACGAGTGGACAATCAAACAAGAAAAGAAGTGCGAGCAGTGTATTAGGGTGTGACACTACA 1313
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1139 ACGAGTGGACAATCGAACAAGAAAAGAAGTGCGAGCAGTGTACTAGGGTGTGACACTACA 1198
Query 1314 AATGTGAGGCAATTGAGGAGGAGAACA 1340
|||||||||||| |||||||||| |||
Sbjct 1199 AATGTGAGGCAAGTGAGGAGGAGGACA 1225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61325294450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5