BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39780.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934744 jgi|Araly1|934744|scaffold_402732.1 1301 0.0
> Ahg934744 jgi|Araly1|934744|scaffold_402732.1
Length=822
Score = 1301 bits (704), Expect = 0.0
Identities = 775/810 (96%), Gaps = 2/810 (0%)
Strand=Plus/Plus
Query 13 GGTTTCAATCGAATTAAAGTCAATGGCGTCACGTTTATGTCTTCTCCTTCTCGTTGCGTG 72
|||||||||| ||||| ||||||||||||| ||| ||||||||||||||||||||| ||
Sbjct 1 GGTTTCAATCCAATTAGAGTCAATGGCGTCGCGTATATGTCTTCTCCTTCTCGTTGTGTT 60
Query 73 TATCGCCGGAGCATTTGCCGGAGACGTCATCGAACTCAATCGATCTCAGAGGGAGTTCGA 132
| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 61 TCTCGCCGGAGCATTTGCCGGAGACGTCATCGAAGTCAATAAATCTCAGAGGGAGTTCGA 120
Query 133 TTATTTCGCTCTATCTCTTCAATGGCCTGGAACCTATTGCCGTGGAACTCGCCATTGTTG 192
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TTATTTCGCTCTCTCTCTTCAATGGCCCGGAACCTATTGCCGTGGAACTCGCCATTGTTG 180
Query 193 CTCCAAAAACGCTTGCTGCAGAGGCTCCGATGCTCCAACTCAATTCACAATTCATGGGTT 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCCAAAAACGCTTGCTGCAGAGGCTCCGATGCTCCAACTCAATTCACAATTCATGGGTT 240
Query 253 ATGGCCTGACTATAACGATGGTTCGTGGCCTTCATGTTGTTATCGATCTGACTTTAAAGA 312
|||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 241 ATGGCCTGACTATAACGACGGTTCATGGCCTTCGTGTTGTTATCGATCTGATTTTAAAGA 300
Query 313 GAAGGAGATTTCAACGTTGATGGATGGTCTTGAGAAGTACTGGCCTAGTCTCAGTTGTGG 372
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GAAGGAGATTTCAACGTTGATGGATGGTCTTGAGAAGTACTGGCCTAGTCTTAGTTGTGG 360
Query 373 TTCTCCATCATCATGCAATGGTGGGAAAGGGTCATTTTGGGGCCACGAGTGGGAGAAACA 432
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 361 TTCTCCATCATCATGCAATGGTGGGAAAGGGTCATTTTGGGGTCATGAGTGGGAGAAACA 420
Query 433 TGGGACTTGTTCTTCTCCTGTTTTTCATGATGAGTATAATTACTTCCTTACCACACTTAA 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGGACTTGTTCTTCTCCTGTTTTTCATGATGAGTATAATTACTTCCTTACCACACTTAA 480
Query 493 TCTCTACTTGAAGCATAATGTCACGGATGTCCTTTATCAAGCTGGCTATGTTGCTTCCAA 552
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATCTACTTGAAGCATAATGTCACGGATGTCCTTTATCAAGCTGGCTATGTTGCTTCCAA 540
Query 553 CAGTGAAAAGTATCCTCTAGGAGGTATCGTAACAGCCATTCAGAATGCATTTCATATCAC 612
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAGCGAAAAGTATCCTCTAGGAGGTATCGTAACAGCCATTCAGAATGCATTTCATATCAC 600
Query 613 CCCTGAAGTGGTTTGCAAAAGAGATGCAATCGATGAAATACGTATATGCTTCTATAAAGA 672
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCCTGAAGTGGTATGCAAAAAAGATGCAATCGATGAAATACGTATATGCTTCTATAAAGA 660
Query 673 TTTTAAGCCCAGGGACTGTGTTGGTTCACAAGATTTGACATCTAGAAAGTCATG-CCCCA 731
|||||||||||||||||||||||||||| |||| || || || ||||| ||||| |||||
Sbjct 661 TTTTAAGCCCAGGGACTGTGTTGGTTCAAAAGAATTAACGTCGAGAAAATCATGTCCCCA 720
Query 732 AGTACGTAAGTTTGCCGGAATACACGCCATTAGATGGTGAAGCTATGGTTCTGAAGATGC 791
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 721 -GTACGTAAGTTTACCGGAATACACACCATTGGATGGTGAAGCTATGGTTCTGAAGATGC 779
Query 792 CAACAGAAAGAGAAGCTCTTTGAATCGGAA 821
||||||||||||||||||||||||| ||||
Sbjct 780 CAACAGAAAGAGAAGCTCTTTGAATTGGAA 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5