BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G39782.1

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483007 jgi|Araly1|483007|fgenesh2_kg.4__2067__AT2G39782.1         686    0.0  


> Ahg483007 jgi|Araly1|483007|fgenesh2_kg.4__2067__AT2G39782.1
Length=474

 Score =  686 bits (371),  Expect = 0.0
 Identities = 430/459 (94%), Gaps = 2/459 (0%)
 Strand=Plus/Plus

Query  18   ACAAAAAAGGAGACTGATTCGCGAAGGGAAGAGAAAGATTGATCATCACATAGAAACAAA  77
            ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct  12   ACAAAAAAGGAGACTGATTCGTGAAGGGAAGAGAAAGATTGATCATCACGTAGAAACAAA  71

Query  78   GCTAATCGTGAAGATATTACGTGCATGCACAACCGATGACCAAAATCTTTTGCAACATCC  137
            | |||||||||| ||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct  72   GTTAATCGTGAAAATATTACGTGCATACACAATCGATGACAAAAATCTTTTGCAACATCC  131

Query  138  AAACTACTATAAAGTTATTGCATGGACAGACCCTGTAGAACCATACACAACACAGGTATG  197
             |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct  132  TAACTACTATAAAGTTATTGCATGGACAGACCCCGGAGATCCATACACAACACAGGTATG  191

Query  198  GGTTTCCAAAGGCAACTATTGGAAGTATAATACAGAATTGGCGATTCCCTTAGATTCTCC  257
            ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct  192  GGTTTCCAAAGGCAACTATTGGAAGTATAATACAGAATTGGTGATTCCTTTAGATTTTCC  251

Query  258  TGCAAAATATCTTTACCTAGAATTGTTTAGAAAACATTCTTCTAGAGATCCTGCAACATC  317
            |||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct  252  TGCAAAATATCTTTACCTAGAATTGTTTAGAAAATACTCTTGTAGAGATCCTGCAACATC  311

Query  318  AGATGGAGAAGTTGCCATAGGTCGGGCTAAGATTCGATTGCCAAAGGATGGA-AAGTTCT  376
            ||||||||| |||||||||||||||||||||||||||||||| | ||||| | |||||||
Sbjct  312  AGATGGAGATGTTGCCATAGGTCGGGCTAAGATTCGATTGCCGACGGATG-ACAAGTTCT  370

Query  377  CTGGTGCAGCTCGTCTCGTTGATTTGAACAGTGATCGTTGTATCGTGGATAAAGGAACTC  436
            |||||||||| |||||||| ||||| ||||||||||| ||||||||||||| ||||||||
Sbjct  371  CTGGTGCAGCCCGTCTCGTCGATTTTAACAGTGATCGATGTATCGTGGATAGAGGAACTC  430

Query  437  TTGAATTGTCTTTGGAACTAATTCATACGATTGTAGTAA  475
            | ||||||||||||||||||||||||||| |||||||||
Sbjct  431  TAGAATTGTCTTTGGAACTAATTCATACGGTTGTAGTAA  469



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17398948584


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5