BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39790.1 Length=723 Score E Sequences producing significant alignments: (Bits) Value Ahg345760 jgi|Araly1|345760|fgenesh1_pg.C_scaffold_4002102 1059 0.0 Ahg934747 jgi|Araly1|934747|scaffold_402735.1 845 0.0 > Ahg345760 jgi|Araly1|345760|fgenesh1_pg.C_scaffold_4002102 Length=729 Score = 1059 bits (573), Expect = 0.0 Identities = 679/730 (93%), Gaps = 8/730 (1%) Strand=Plus/Plus Query 1 ATGGCTTTTGCTTGGTGCGTACGCAGGTCAGCATCTAAGTTGGCTTCCGCATGTGGTCAA 60 |||||||||||||| |||||||||| ||||||| ||||| | ||||||| |||||||| | Sbjct 1 ATGGCTTTTGCTTGTTGCGTACGCAAGTCAGCAACTAAGCTCGCTTCCGTATGTGGTCGA 60 Query 61 GCCCGGTCTATCTCCGCCGTTGTGAACCGTCCGTCTCTTGCTCTCAACCCGTCTCCGCTG 120 | ||||||||||||||| ||| |||||| ||||||||| | | ||||||| |||||| || Sbjct 61 GTCCGGTCTATCTCCGCGGTTATGAACCATCCGTCTCTAGATTTCAACCCCTCTCCGATG 120 Query 121 AGTCCTTTCGTCTCTCGTGGCTTTCTTT-ACACGATGGCTGTTGATAAGCTGAGCTCTGA 179 |||||||||||||||||||||||| ||| || ||||||||||||||||||||||| |||| Sbjct 121 AGTCCTTTCGTCTCTCGTGGCTTT-TTTAACTCGATGGCTGTTGATAAGCTGAGCCCTGA 179 Query 180 GCAAACCCTTCACCTTGTGATTGACTCCGAGCTCAATTCTGCTTTGCAAACCGATGATCC 239 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GCAAAGCCTTCACCTTGTGATTGACTCCGAGCTCAATTCTGCTTTGCAAACCGATGATCC 239 Query 240 CAATTT------GAATGAAGAGATGGCTCCAGGAAGCTTCCCTTTGAAAATTAGAGACAA 293 |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 240 CAATTTAGAGCAGAATGAAGAGATGGCTCCAGGAAGCTTCCCTTTTAAAATTAGAGACAA 299 Query 294 GCCTGGAGATCAGAGTGTAACATTGACAGCATATTACAATGACGAACGTATTCATGTTGA 353 |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| Sbjct 300 GCCTGGAGATCAGAGTGTAACATTGACAGCATATTACAATGATGAACATATTCATATTGA 359 Query 354 TGTAGGAATGCCTTATCTTGGTGATGATGTCATTGATGTGTTTGGTCCTAATAATGATGA 413 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 360 TGTAGGAATGCCTTATCTTGGTGATGATGTCATTGATGTGTTTGGTCCTCGTAATGATGA 419 Query 414 ACTAAGTTTTCCACTAGTTGTGACTGTTATCAAGAAGAACGGAGTCAGCATAGAGTTTAC 473 ||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| Sbjct 420 ACTAAGTTTTCCACTAGTTGTGACTGTTACCAAGAAGAACGCAGTCAGGATAGAGTTTAC 479 Query 474 CTGCCAGGCTTATGCTGATTATATTGACTTAACAGATTTAACTGTGCATGATTATCAGTA 533 |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 480 CTGCAACGCTTATGCTGATTATATTGACTTAACAGATTTAACCGTGCATGATTATCCCTT 539 Query 534 TCAAATGGGAGAAACTGACTGGCCTCGTTTCAAAAACTTGGACGATAATCTGAAGAAGGC 593 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TCCAATGGGAGAAACTGACTGGCCTCGTTTCAAAAACTTGGACGATAATCTGAAGAAGGC 599 Query 594 GTTCCACAGGTATCTGGCGACCAGACTTGACGCAAACATAACGAAACTCTTGCATAAGTA 653 |||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| Sbjct 600 GTTCCACAGGTATCTGGCGACCAGACTTGAAGCAAGCATAACGAAACTCTTGCACAAGTA 659 Query 654 CATGGTGAGCAAAATAAAGAGAGAGTACTTGCTATGGTTGAAGAATGTTAACAAGTTTGT 713 ||||||| |||||| |||| ||||||||||| ||||||||||||||||||| |||||||| Sbjct 660 CATGGTGGGCAAAACAAAGCGAGAGTACTTGTTATGGTTGAAGAATGTTAAGAAGTTTGT 719 Query 714 GGATGGATGA 723 |||||||||| Sbjct 720 GGATGGATGA 729 > Ahg934747 jgi|Araly1|934747|scaffold_402735.1 Length=775 Score = 845 bits (457), Expect = 0.0 Identities = 650/740 (88%), Gaps = 25/740 (3%) Strand=Plus/Plus Query 1 ATGGCTTTTGCTTGGTGCGTACGCAGGTCAGCATCTAAGTTGGCTTCCGCATGTGGTCAA 60 ||||||||||||||| |||| || | ||||||| ||||| | ||||||| |||||||| | Sbjct 24 ATGGCTTTTGCTTGGGGCGTGCGGAAGTCAGCAACTAAGCTCGCTTCCGTATGTGGTCGA 83 Query 61 GCCCGGTCTATCTCCGCCGTTGTGAACCGTCCGTCTCTTGCTCTCAACCCGTCTCCGCTG 120 | |||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||| Sbjct 84 GTCCGGTCTATCTCGGCGGTTGTGAACCGTCCGTCTCTAGCTCTGAACCCGTCTCCGCTG 143 Query 121 AGTCCTTTCGTCTCTCGTGGCTTTCTTTACACGATGGCTGTTGATAAGCTGAGCTCTGAG 180 |||| ||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 144 AGTCATTTAGTCTCTCGTGGCTTTCTTTACACGATGGCTGTTGATCAGCTGACCTCTGAG 203 Query 181 CAAACCCTTCACCTTGTGATTGACTCCGAGCTCAATTCTGCTTTGCAAACCGATGATCCC 240 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 204 CAAACCCTTCTCCTTGTGATTGAATCCGAGCTCAATTCTGCTTTGCAAACCGATGATCGC 263 Query 241 AATTTGA-ATGAAGAGATGGCTCCAGGAAGCTTCCCTTTGAAAATTAG-AGACAAGCCTG 298 ||||| | | |||||||||| || ||||||||||||||| | |||| | |||| | |||| Sbjct 264 AATTT-AGAGGAAGAGATGGATCTAGGAAGCTTCCCTTTTAGAATT-GAAGACGATCCTG 321 Query 299 GAGATCAGAGTGTAACATTGAC-AGCATATTACAATGACGAACGTATTCATG-TTGATGT 356 ||||||||||||||||| |||| || | | |||||||| |||| |||| | | || || | Sbjct 322 GAGATCAGAGTGTAACAATGACTAG-AGACTACAATGAGGAACATATTGAAGTTTCAT-T 379 Query 357 AGGAATGCCTTATCTTGGTGATGATGTCATTGATGTGTTTGGTCCTAATAATGATGAACT 416 ||| |||||||||||||||| |||||||||||||| ||||||| || ||| |||||||| Sbjct 380 AGGCATGCCTTATCTTGGTGCTGATGTCATTGATGCGTTTGGTACTCGTAAGGATGAACT 439 Query 417 AAGTTTTCCACTAGTTGTGACTGTTATCAAGAAGAACGGAGTCAGCATAGAGTTTACCTG 476 |||||||||||||||||||||||||| |||||||| |||| ||||| ||||||||||||| Sbjct 440 AAGTTTTCCACTAGTTGTGACTGTTACCAAGAAGAGCGGACTCAGCCTAGAGTTTACCTG 499 Query 477 CCAGGCTTATGCTGATTATATTGACTTAACAGATTTAACTGTGCATGATT---A---T-C 529 | ||||||||||||||||||||||||||||||||||||||||| || || | | | Sbjct 500 CGAGGCTTATGCTGATTATATTGACTTAACAGATTTAACTGTGAATTATCCGGAGGATTC 559 Query 530 -----AGTATCAAATGGGAGAAACTGACTGGCCTCGTTTCAAAAACTTGGACGATAATCT 584 |||||| ||||| | || ||||||||||||||||||||||||||||||||||||| Sbjct 560 TTTGGAGTATCTAATGG-A-AA-CTGACTGGCCTCGTTTCAAAAACTTGGACGATAATCT 616 Query 585 GAAGAAGGCGTTCCACAGGTATCTGGCGACCAGACTTGACGCAAACATAACGAAACTCTT 644 ||||||||||||||| |||||||| ||||||||| |||| ||| || | ||||||||| Sbjct 617 GAAGAAGGCGTTCCAAAGGTATCTAGCGACCAGAGTTGAAACAAGCACAGTGAAACTCTT 676 Query 645 GCATAAGTACATGGTGAGCAAAATAAAGAGAGAGTACTT-GCTATGGTTGAAGAATGTTA 703 ||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 677 GCATAAGTACATGATGAGCAAAATAAAGAGAGAGTACTTAG-TATGGTTGAAGAATGTTA 735 Query 704 ACAAGTTTGTGGATGGATGA 723 | ||||||||| ||| |||| Sbjct 736 AGAAGTTTGTGCATGAATGA 755 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26609796066 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5