BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39790.1
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345760 jgi|Araly1|345760|fgenesh1_pg.C_scaffold_4002102 1059 0.0
Ahg934747 jgi|Araly1|934747|scaffold_402735.1 845 0.0
> Ahg345760 jgi|Araly1|345760|fgenesh1_pg.C_scaffold_4002102
Length=729
Score = 1059 bits (573), Expect = 0.0
Identities = 679/730 (93%), Gaps = 8/730 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTTTGCTTGGTGCGTACGCAGGTCAGCATCTAAGTTGGCTTCCGCATGTGGTCAA 60
|||||||||||||| |||||||||| ||||||| ||||| | ||||||| |||||||| |
Sbjct 1 ATGGCTTTTGCTTGTTGCGTACGCAAGTCAGCAACTAAGCTCGCTTCCGTATGTGGTCGA 60
Query 61 GCCCGGTCTATCTCCGCCGTTGTGAACCGTCCGTCTCTTGCTCTCAACCCGTCTCCGCTG 120
| ||||||||||||||| ||| |||||| ||||||||| | | ||||||| |||||| ||
Sbjct 61 GTCCGGTCTATCTCCGCGGTTATGAACCATCCGTCTCTAGATTTCAACCCCTCTCCGATG 120
Query 121 AGTCCTTTCGTCTCTCGTGGCTTTCTTT-ACACGATGGCTGTTGATAAGCTGAGCTCTGA 179
|||||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||||
Sbjct 121 AGTCCTTTCGTCTCTCGTGGCTTT-TTTAACTCGATGGCTGTTGATAAGCTGAGCCCTGA 179
Query 180 GCAAACCCTTCACCTTGTGATTGACTCCGAGCTCAATTCTGCTTTGCAAACCGATGATCC 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCAAAGCCTTCACCTTGTGATTGACTCCGAGCTCAATTCTGCTTTGCAAACCGATGATCC 239
Query 240 CAATTT------GAATGAAGAGATGGCTCCAGGAAGCTTCCCTTTGAAAATTAGAGACAA 293
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 CAATTTAGAGCAGAATGAAGAGATGGCTCCAGGAAGCTTCCCTTTTAAAATTAGAGACAA 299
Query 294 GCCTGGAGATCAGAGTGTAACATTGACAGCATATTACAATGACGAACGTATTCATGTTGA 353
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||
Sbjct 300 GCCTGGAGATCAGAGTGTAACATTGACAGCATATTACAATGATGAACATATTCATATTGA 359
Query 354 TGTAGGAATGCCTTATCTTGGTGATGATGTCATTGATGTGTTTGGTCCTAATAATGATGA 413
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 TGTAGGAATGCCTTATCTTGGTGATGATGTCATTGATGTGTTTGGTCCTCGTAATGATGA 419
Query 414 ACTAAGTTTTCCACTAGTTGTGACTGTTATCAAGAAGAACGGAGTCAGCATAGAGTTTAC 473
||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct 420 ACTAAGTTTTCCACTAGTTGTGACTGTTACCAAGAAGAACGCAGTCAGGATAGAGTTTAC 479
Query 474 CTGCCAGGCTTATGCTGATTATATTGACTTAACAGATTTAACTGTGCATGATTATCAGTA 533
|||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 480 CTGCAACGCTTATGCTGATTATATTGACTTAACAGATTTAACCGTGCATGATTATCCCTT 539
Query 534 TCAAATGGGAGAAACTGACTGGCCTCGTTTCAAAAACTTGGACGATAATCTGAAGAAGGC 593
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCCAATGGGAGAAACTGACTGGCCTCGTTTCAAAAACTTGGACGATAATCTGAAGAAGGC 599
Query 594 GTTCCACAGGTATCTGGCGACCAGACTTGACGCAAACATAACGAAACTCTTGCATAAGTA 653
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 600 GTTCCACAGGTATCTGGCGACCAGACTTGAAGCAAGCATAACGAAACTCTTGCACAAGTA 659
Query 654 CATGGTGAGCAAAATAAAGAGAGAGTACTTGCTATGGTTGAAGAATGTTAACAAGTTTGT 713
||||||| |||||| |||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 660 CATGGTGGGCAAAACAAAGCGAGAGTACTTGTTATGGTTGAAGAATGTTAAGAAGTTTGT 719
Query 714 GGATGGATGA 723
||||||||||
Sbjct 720 GGATGGATGA 729
> Ahg934747 jgi|Araly1|934747|scaffold_402735.1
Length=775
Score = 845 bits (457), Expect = 0.0
Identities = 650/740 (88%), Gaps = 25/740 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTTTGCTTGGTGCGTACGCAGGTCAGCATCTAAGTTGGCTTCCGCATGTGGTCAA 60
||||||||||||||| |||| || | ||||||| ||||| | ||||||| |||||||| |
Sbjct 24 ATGGCTTTTGCTTGGGGCGTGCGGAAGTCAGCAACTAAGCTCGCTTCCGTATGTGGTCGA 83
Query 61 GCCCGGTCTATCTCCGCCGTTGTGAACCGTCCGTCTCTTGCTCTCAACCCGTCTCCGCTG 120
| |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 84 GTCCGGTCTATCTCGGCGGTTGTGAACCGTCCGTCTCTAGCTCTGAACCCGTCTCCGCTG 143
Query 121 AGTCCTTTCGTCTCTCGTGGCTTTCTTTACACGATGGCTGTTGATAAGCTGAGCTCTGAG 180
|||| ||| |||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 144 AGTCATTTAGTCTCTCGTGGCTTTCTTTACACGATGGCTGTTGATCAGCTGACCTCTGAG 203
Query 181 CAAACCCTTCACCTTGTGATTGACTCCGAGCTCAATTCTGCTTTGCAAACCGATGATCCC 240
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 204 CAAACCCTTCTCCTTGTGATTGAATCCGAGCTCAATTCTGCTTTGCAAACCGATGATCGC 263
Query 241 AATTTGA-ATGAAGAGATGGCTCCAGGAAGCTTCCCTTTGAAAATTAG-AGACAAGCCTG 298
||||| | | |||||||||| || ||||||||||||||| | |||| | |||| | ||||
Sbjct 264 AATTT-AGAGGAAGAGATGGATCTAGGAAGCTTCCCTTTTAGAATT-GAAGACGATCCTG 321
Query 299 GAGATCAGAGTGTAACATTGAC-AGCATATTACAATGACGAACGTATTCATG-TTGATGT 356
||||||||||||||||| |||| || | | |||||||| |||| |||| | | || || |
Sbjct 322 GAGATCAGAGTGTAACAATGACTAG-AGACTACAATGAGGAACATATTGAAGTTTCAT-T 379
Query 357 AGGAATGCCTTATCTTGGTGATGATGTCATTGATGTGTTTGGTCCTAATAATGATGAACT 416
||| |||||||||||||||| |||||||||||||| ||||||| || ||| ||||||||
Sbjct 380 AGGCATGCCTTATCTTGGTGCTGATGTCATTGATGCGTTTGGTACTCGTAAGGATGAACT 439
Query 417 AAGTTTTCCACTAGTTGTGACTGTTATCAAGAAGAACGGAGTCAGCATAGAGTTTACCTG 476
|||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||||||
Sbjct 440 AAGTTTTCCACTAGTTGTGACTGTTACCAAGAAGAGCGGACTCAGCCTAGAGTTTACCTG 499
Query 477 CCAGGCTTATGCTGATTATATTGACTTAACAGATTTAACTGTGCATGATT---A---T-C 529
| ||||||||||||||||||||||||||||||||||||||||| || || | | |
Sbjct 500 CGAGGCTTATGCTGATTATATTGACTTAACAGATTTAACTGTGAATTATCCGGAGGATTC 559
Query 530 -----AGTATCAAATGGGAGAAACTGACTGGCCTCGTTTCAAAAACTTGGACGATAATCT 584
|||||| ||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 560 TTTGGAGTATCTAATGG-A-AA-CTGACTGGCCTCGTTTCAAAAACTTGGACGATAATCT 616
Query 585 GAAGAAGGCGTTCCACAGGTATCTGGCGACCAGACTTGACGCAAACATAACGAAACTCTT 644
||||||||||||||| |||||||| ||||||||| |||| ||| || | |||||||||
Sbjct 617 GAAGAAGGCGTTCCAAAGGTATCTAGCGACCAGAGTTGAAACAAGCACAGTGAAACTCTT 676
Query 645 GCATAAGTACATGGTGAGCAAAATAAAGAGAGAGTACTT-GCTATGGTTGAAGAATGTTA 703
||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 677 GCATAAGTACATGATGAGCAAAATAAAGAGAGAGTACTTAG-TATGGTTGAAGAATGTTA 735
Query 704 ACAAGTTTGTGGATGGATGA 723
| ||||||||| ||| ||||
Sbjct 736 AGAAGTTTGTGCATGAATGA 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26609796066
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5