BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39795.1
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934751 jgi|Araly1|934751|scaffold_402739.1 1199 0.0
Ahg333399 jgi|Araly1|333399|fgenesh1_pm.C_scaffold_772000001 1158 0.0
> Ahg934751 jgi|Araly1|934751|scaffold_402739.1
Length=793
Score = 1199 bits (649), Expect = 0.0
Identities = 747/795 (94%), Gaps = 3/795 (0%)
Strand=Plus/Plus
Query 20 ATCAATCAAATCAAATCACCATGGCTTTAGCTTGGTGCGTTGTACGCAGGTCAGCATCTA 79
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCAATCAAATCGAATCACCATGGCTTTAGCTTGGTGCGTTGTACGCAGGTCAGCATCTA 60
Query 80 AGTTTGCTTCCGTTTATGGTGGCCGAGTCCGATCTATCTCCGCCGTTGCGAACCGCGCCT 139
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct 61 AGTTTGCTTCCGTTTATGGTGGTCGAGTCCGATCTATCTCCGCCGTTGTGAACCGCGCGT 120
Query 140 CTCTAGCTCGCAACCCATCTTCAATTCGTCCATTCGTCTCTCGCGCCTTAAATTACTCGA 199
|||||||||||||||||||| | |||||||||| |||||||||| ||| ||||||||||
Sbjct 121 CTCTAGCTCGCAACCCATCTCCGGTTCGTCCATTGGTCTCTCGCGGCTTTAATTACTCGA 180
Query 200 CGGCTATTGATCGAATTAGCTCCGAGCAAACGCTTATCCGAGTTATTGACTCCGAAATCA 259
|||||||||||||||| |||||||||||| | |||||||||||||| |||||||| ||||
Sbjct 181 CGGCTATTGATCGAATGAGCTCCGAGCAATCACTTATCCGAGTTATCGACTCCGAGATCA 240
Query 260 ACTCTGCTTTGCAATCCGATAATATCGATTCGGATGAAGAGATGACTCCAGGAAGCTTTC 319
| ||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 241 ATTCTGCTTCGCAAACCGATAATATCGATTTGGATGAAGAGATAACTCCAGGAAGCTTTC 300
Query 320 CTTTTAGAATTGAAGACAAACCTGGAAATCAGAATGTTACATTGACTAGAGACTACAATG 379
||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct 301 CTTTTAGAATTGAAGACAATCCTGGACATCAGAATGTAACATTGACTAGAGACTACAATG 360
Query 380 GGGAACATATTAAAGTTGTTGTAAGCATGCCTAGTCTTGTTTCAgatgaaaatgatgatg 439
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 361 GGGAACATATTAAAGTTGTAGTTAGCATGCCTAGTCTTGTTTCAGATGAAAATGATGATG 420
Query 440 atgatgatgatgatgaAGGTCCTAGTAATGAATCGAGTATTCCACTAGTTGTGACTGTTA 499
||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 421 ATGCTGATGATGATGAAGGTCCTAGTAATGAATCAAGTATTCCATTAGTTGTGACTGTTA 480
Query 500 CTAAGAAGAGTGGACTCA-CTCTAGAGTTTAGCTGTATGGCTTTTCCTGATGAGATTGCT 558
| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 481 CCAAGAAGAGTGGACTCAGCT-TAGAGTTTAGCTGTATGGCTTTTCCAGATGAGATTGCT 539
Query 559 ATAGATGCTTTATCTGTGAAACATCCTGGGGACTCTTTGGAGGATCAACTGGCTAATGAA 618
|||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||||
Sbjct 540 ATAGATGCTTTATCTGTGAAACATCCTGGGGATTCTTTGGAGGAACAAATGGCAAATGAA 599
Query 619 GGGCCTGATTTTGAAGACTTGGACGAGAATCTGAAGAAGACGTTCTACAAGTTTTTGGAG 678
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGGCCTGATTTCGAAGACTTGGACGAGAATCTGAAGAAGACGTTCTACAAGTTTTTGGAG 659
Query 679 ATCAGAGGAGTGAAAGCTAGCACGACGAATTTCCTGCACGAGTACATGACGAGGAAAGTG 738
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 ATCAGAGGGGTGAAAGCTAGCACGACGAATTTCCTGCACGAGTACATGATGAGGAAAGTG 719
Query 739 AACCGAGAGTACTTTTTATGGTTGAAGAATGTTAAGGAGTTCATGGAACAGTGAAACGTT 798
|||||||||||||| ||||||||||||||||||||||| || |||||| |||||| ||
Sbjct 720 AACCGAGAGTACTTGTTATGGTTGAAGAATGTTAAGGAATTTATGGAAGAGTGAAT-GTA 778
Query 799 AGGTTGATAGCTAAG 813
|||| | ||||||||
Sbjct 779 AGGTCGTTAGCTAAG 793
> Ahg333399 jgi|Araly1|333399|fgenesh1_pm.C_scaffold_772000001
Length=753
Score = 1158 bits (627), Expect = 0.0
Identities = 708/748 (95%), Gaps = 2/748 (0%)
Strand=Plus/Plus
Query 40 ATGGCTTTAGCTTGGTGCGTTGTACGCAGGTCAGCATCTAAGTTTGCTTCCGTTTATGGT 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTTAGCTTGGTGCGTTGTACGCAGGTCAGCATCTAAGTTTGCTTCCGTTTATGGT 60
Query 100 GGCCGAGTCCGATCTATCTCCGCCGTTGCGAACCGCGCCTCTCTAGCTCGCAACCCATCT 159
|| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 61 GGTCGAGTCCGATCTATCTCCGCCGTTGTGAACCGCGCGTCTCTAGCTCGCAACCCATCT 120
Query 160 TCAATTCGTCCATTCGTCTCTCGCGCCTTAAATTACTCGACGGCTATTGATCGAATTAGC 219
| |||||||||| |||||||||| ||| |||||||||||||||||||||||||| |||
Sbjct 121 CCGGTTCGTCCATTGGTCTCTCGCGGCTTTAATTACTCGACGGCTATTGATCGAATGAGC 180
Query 220 TCCGAGCAAACGCTTATCCGAGTTATTGACTCCGAAATCAACTCTGCTTTGCAATCCGAT 279
||||||||| | |||||||||||||| |||||||| ||||| ||||||| |||| |||||
Sbjct 181 TCCGAGCAATCACTTATCCGAGTTATCGACTCCGAGATCAATTCTGCTTCGCAAACCGAT 240
Query 280 AATATCGATTCGGATGAAGAGATGACTCCAGGAAGCTTTCCTTTTAGAATTGAAGACAAA 339
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 AATATCGATTTGGATGAAGAGATAACTCCAGGAAGCTTTCCTTTTAGAATTGAAGACAAT 300
Query 340 CCTGGAAATCAGAATGTTACATTGACTAGAGACTACAATGGGGAACATATTAAAGTTGTT 399
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 CCTGGACATCAGAATGTAACATTGACTAGAGACTACAATGGGGAACATATTAAAGTTATA 360
Query 400 GTAAGCATGCCTAGTCTTGTTTCAgatgaaaatgatgatgatgatgatgatgatgaAGGT 459
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 GTAAGCATGCCTAGTCTTGTTTCAGATGAAAATGATGATGATGCTGATGATGATGAAGGT 420
Query 460 CCTAGTAATGAATCGAGTATTCCACTAGTTGTGACTGTTACTAAGAAGAGTGGACTCA-C 518
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 421 CCTAGTAATGAATCAAGTATTCCACTAGTTGTGACTGTTACCAAGAAGAGCGGACTCAGC 480
Query 519 TCTAGAGTTTAGCTGTATGGCTTTTCCTGATGAGATTGCTATAGATGCTTTATCTGTGAA 578
| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 T-TAGAGTTTAGCTGCATGGCTTTTCCTGATGAGATTGCTATAGATGCCTTATCTGTGAA 539
Query 579 ACATCCTGGGGACTCTTTGGAGGATCAACTGGCTAATGAAGGGCCTGATTTTGAAGACTT 638
|||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 540 ACATCCTGGGGATTCTTTGGAGGATCAAATGGCCAATGAAGGGCCTGATTTCGAAGACTT 599
Query 639 GGACGAGAATCTGAAGAAGACGTTCTACAAGTTTTTGGAGATCAGAGGAGTGAAAGCTAG 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGACGAGAATCTGAAGAAGACGTTCTACAAGTTTTTGGAGATCAGAGGAGTGAAAGCTAG 659
Query 699 CACGACGAATTTCCTGCACGAGTACATGACGAGGAAAGTGAACCGAGAGTACTTTTTATG 758
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 660 TACGACGAATTTCCTGCACGAGTACATGATGAGGAAAGTGAACCGAGAGTACTTGTTATG 719
Query 759 GTTGAAGAATGTTAAGGAGTTCATGGAA 786
||||||||||||||||||||| ||||||
Sbjct 720 GTTGAAGAATGTTAAGGAGTTTATGGAA 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34348748217
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5