BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39820.1
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901916 jgi|Araly1|901916|Al_scaffold_0004_2566 1195 0.0
> Ahg901916 jgi|Araly1|901916|Al_scaffold_0004_2566
Length=741
Score = 1195 bits (647), Expect = 0.0
Identities = 706/735 (96%), Gaps = 2/735 (0%)
Strand=Plus/Plus
Query 54 GTCTTCAATATGATAACAATAATTGCGAAATTGGTGTCTTTTCCAAACTCACAAATGCTT 113
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 8 GTCTTCAATATGATAACAATAATTGCGAAATTGGTGTATTTTCCAAACTCACAAATGCTT 67
Query 114 ATTGTCTCGTTTCCGCAACATCTGCCTCCGCAAACTTCTTCACTGGTTATGAGTCGAAGT 173
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 68 ATTGTCTCGTTTCCGCAACATCTGCCTCCGCAAATTTATTCACTGGTTATGAGTCGAAGT 127
Query 174 TAAAAGGTGTTATCCCAATTGTTACTACTTCCATAGGAGGATCAGGGACTATTGGTAGTC 233
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 128 TAAAAGGTGTTATCCCAATTGTTACTACTTCCATAGGAGGATCTGGTACTATAGGTAGTC 187
Query 234 TATGTGTCGGAAACAAAAACGGACTTCTTCTGTCTCACACCATTACAGACCAAGAGCTTC 293
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 188 TATGTGTTGGAAACAAAAACGGGCTTCTTCTGTCTCACACCATTACAGACCAAGAGCTTC 247
Query 294 AACATTTGAGAGATAGTTTGCCTGATGAAGTTGTAGTCCAACGAATTGAAGAACCTATAT 353
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 248 AACATTTGAGAGATAGTTTGCCTGATGAAGTTGTAGTCCAACGAATTGAGGAACCTATAT 307
Query 354 GTGCACTTGGAAACGCTATAGCTTGCAATGACTATGTCGCGCTTGTGCATCCAAAGCTCG 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 308 GTGCACTTGGAAACGCTATAGCTTGCAATGACTATGTCGCGCTTGTGCATCCAAAGCTTG 367
Query 414 AGAA-AGACACCGAAGAGATAATAAGTGATGTTCTTGGTGTTGAAGTTTATCGCCAAACC 472
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AGAACA-ACACCGAAGAGATAATAAGTGATGTTCTTGGTGTTGAAGTTTATCGCCAAACC 426
Query 473 ATTGCGAATAACGAACTTGTGGGAAGTTATTGTTCTTTATCCAATAATGGTGGAATGGTT 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 ATTGCGAATAACGAACTTGTGGGAAGTTATTGTTCTTTATCCAATAATGGTGGAATGGTT 486
Query 533 CACTCAAATACCAACGTGGAAGAAATGGTCGAGCTAGCGAATCTTGTTCAGGTGCCTTTG 592
|| |||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 487 CATTCAAATACGAAAGTGGAAGAAATGGTCGAACTAGCGAATCTTCTTCAGGTGCCTTTG 546
Query 593 GTTGCAGGAACCGTGAACCGTGGCAGCCAAGTTATATCCGCGGGTTTGACTGTGAACGAT 652
|||||||||||| |||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 547 GTTGCAGGAACCATGAACCGTGGAAGCCAAGTGATATCCGCTGGTTTGACTGTGAACGAT 606
Query 653 TGGACCGCTTTCTGTGGGTCAGATACTACTGCAGTAGAGCTCTCTGTTGTTAACAATATC 712
||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 607 TGGACCGCTTTCTGTGGGTCAGACACAACTGCAGTAGAGCTCTCTGTTGTTAACGGTATC 666
Query 713 TTCAAACTAGTCCAATCTCAGCCTGATTTCGTCGGTAGTGAAATGAGGAAGTCTTTGATC 772
||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||
Sbjct 667 TTCAAACTAGTCCAATCTCAGCCCGATTTTGTCGTTAGTGAGATGAGGAAGTCTTTGATC 726
Query 773 GATACCTATGTCTAA 787
|||||||||||||||
Sbjct 727 GATACCTATGTCTAA 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32747585703
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5