BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39830.1
Length=1908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321672 jgi|Araly1|321672|fgenesh1_pm.C_scaffold_4001729 2564 0.0
> Ahg321672 jgi|Araly1|321672|fgenesh1_pm.C_scaffold_4001729
Length=1578
Score = 2564 bits (1388), Expect = 0.0
Identities = 1517/1579 (96%), Gaps = 9/1579 (1%)
Strand=Plus/Plus
Query 145 ttcctcttcctcttcttcttctccttcttcttcctACGGTGTTGCTCGTGTCAGCCATAT 204
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 6 TTCTTCTTCCTCTTCTTCTTCTCCTTCTTCTTCTTACGGTGTTGCTCGTGTCAGCCATAT 65
Query 205 CTCCAATCCTTGCATCTTCGGGGAAGTTGGGTCGTCATCTTCGTCAACGTATAGAGATAA 264
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 66 CTCTAATCCTTGCATCTTTGGGGAAGTTGGGTCGTCATCTTCGTCAACATATAGAGATAA 125
Query 265 GAAATGGAAGTTGATGAAATGGGTGAGTAAACTTTTCAAGAGTGGCTCGAATGGTGGTGG 324
|||||||||||||||||||||||||||||| |||||||||| |||||| |||||| ||
Sbjct 126 GAAATGGAAGTTGATGAAATGGGTGAGTAAGCTTTTCAAGACTGGCTCTAATGGT-GT-- 182
Query 325 TAGTGGTGCTCACACTAATCATCATCCTCCTCAGTTTCAAGAAGACGAGAATATGGTCTT 384
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 183 TAGTGGTGTTCACACTAATCATCA---TCCTCAGTTTCAAGAAGACGAGAATATGGTCTT 239
Query 385 TCCTCTACCTCCTTCTTCTTTGGATGATCGGTCAAGAGGTGCACGGGACAAAGAAGAACT 444
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||
Sbjct 240 TCCTCTACCTCCTTCTTCTTTGGATGATCGGTCGAGAGGTGCACGGGACAAAAAAGAGCT 299
Query 445 CGACCGTTCAATTTCACTTTCTCTAGCTGACAACACGAAGCGCCCACATGGGTATGGTTG 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGACCGTTCAATTTCACTTTCTCTAGCTGACAACACGAAGCGCCCACATGGGTATGGTTG 359
Query 505 GTCTATGGATAACAACCGAGATTTTCCAAGGCCTTTTCACGGTGGCTTGAATCCATCATC 564
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTCTATGGATAACAATCGAGATTTTCCAAGGCCTTTTCACGGTGGCTTGAATCCATCATC 419
Query 565 TTTCATTCCACCTTATGAGCCTTCCTATCAATATAGACGAAGAC-AA--AGAATATGTGG 621
|||||||||||||||||||||||||||||||| |||||||||| || |||||||||||
Sbjct 420 TTTCATTCCACCTTATGAGCCTTCCTATCAATGCAGACGAAGACAAAGCAGAATATGTGG 479
Query 622 CGGTTGCAATAGCGATATTGGATCGGGGAACTATCTAGGATGCATGGGCACATTCTTTCA 681
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 CGGTTGCAATCGCGATATTGGATCAGGGAACTATCTAGGATGCATGGGCACATTCTTTCA 539
Query 682 TCCTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGTTCTCTCT 741
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCCTGAATGCTTCCGTTGTCATTCTTGTGGTTATGCTATCACTGAGCATGAGTTCTCTCT 599
Query 742 GTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTTACTCATCCCAAATGCGA 801
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTCAGGAACCAAACCGTATCATAAGCTTTGTTTCAAAGAGCTTACTCATCCCAAATGCGA 659
Query 802 AGTTTGTCACCATTTTATACCAACTAATGATGCTGGCTTGATCGAGTATCGATGCCATCC 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGTTTGTCACCATTTTATACCAACTAATGATGCTGGCTTGATCGAGTATCGATGCCATCC 719
Query 862 GTTTTGGAACCAAAAGTATTGCCCGTCTCACGAATATGATAAAACTGCTCGTTGTTGTAG 921
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 720 GTTTTGGAACCAAAAGTATTGCCCGTCTCACGAATATGATAAAACCGCTCGTTGTTGCAG 779
Query 922 CTGCGAACGTTTGGAGTCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAAGTTT 981
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 780 CTGCGAACGTTTGGAGTCATGGGATGTGAGATATTACATGTTAGAAGATGGGAGAAGTTT 839
Query 982 GTGTTTAGAATGTATGGAAACCGCGATAACCGATACTGGAGAATGTCAACCGCTTTACCA 1041
||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct 840 GTGTTTAGAATGTATGGAAACTGCGATAATCGATACTGGAGAGTGTCAACCGCTTTACCA 899
Query 1042 CGCTATAAGAGACTATTACGAAGGAATGTACATGAAACTTGATCAACAGATTCCTATGCT 1101
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CGCGATAAGAGACTATTACGAAGGAATGTACATGAAACTTGATCAACAGATTCCTATGCT 959
Query 1102 TCTTGTTCAAAGAGAAGCTCTCAATGATGCTATCGTAGGAGAGAAAAACGGATACCATCA 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCTTGTTCAAAGAGAAGCTCTCAATGATGCTATCGTAGGAGAGAAAAACGGATACCATCA 1019
Query 1162 CATGCCTGAGACAAGAGGTTTATGCTTGTCTGAAGAACAAACAGTTACAAGTGTTCTTAG 1221
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 CATGCCTGAGACAAGAGGTTTATGCTTGTCTGAAGAACAGACAGTTACAAGTGTTCTTAG 1079
Query 1222 AAGACCGAGACTTGGTGCTCACCGTCTTGTTGGTATGAGAACTCAGCCTCAAAGGCTTAC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AAGACCGAGACTTGGTGCTCACCGTCTTGTTGGTATGAGAACTCAGCCTCAAAGGCTTAC 1139
Query 1282 ACGCAAATGTGAAGTCACAGCGATTCTAGTTCTTTACGGGCTCCCGCGATTACTGACCGG 1341
||||||||||||||||||||| || || ||||||||||| ||||| |||||||| |||||
Sbjct 1140 ACGCAAATGTGAAGTCACAGCCATACTCGTTCTTTACGGACTCCCACGATTACTAACCGG 1199
Query 1342 AGCAATTCTCGCCCATGAGCTCATGCATGGATGGCTAAGGCTTAATGGGTTTAGGAACCT 1401
||||||||||||||||||||||||||| |||||| |||| || |||||||||||||||||
Sbjct 1200 AGCAATTCTCGCCCATGAGCTCATGCACGGATGGTTAAGACTCAATGGGTTTAGGAACCT 1259
Query 1402 TAACCCTGAGGTAGAGGAAGGAATCTGCCAAGTCCTCTCTTACATGTGGCTTGAATCTGA 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TAACCCTGAGGTAGAGGAAGGAATCTGCCAAGTCCTCTCTTACATGTGGCTTGAATCTGA 1319
Query 1462 AGTTCTCTCAGATCCTTCAACAAGAAACTTGCCTTCAACATCATCGGTGGCCACATCATC 1521
|||||||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||
Sbjct 1320 AGTTCTCTCAGATCTTTCATCAAGAAACTTGCCTTCAACATCATCGGCAGCCACACCATC 1379
Query 1522 ATCATCATCCTTCTCGAACAAGAAAGGAGGAAAATCAAACGTGGAGAAGAAACTTGGAGA 1581
||||||||| || || |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1380 ATCATCATCATTGTCTAACAAGAAAGGAGGGAAATCAAACGTAGAGAAGAAACTTGGAGA 1439
Query 1582 GTTCTTTAAACATCAGATAGCTCATGATGCGTCTCCAGCTTATGGAGGAGGTTTCAGGGC 1641
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1440 GTTTTTTAAACATCAGATAGCTCATGATGCGTCTCCAGCTTATGGAGGAGGTTTCAGAGC 1499
Query 1642 AGCAAATGCAGCGGCTTGTAAGTACGGTCTTCGTCGAACACTCGATCATATCCGCTTAAC 1701
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1500 AGCAAATGCAGCGGCTTGTAAGTACGGTCTACGTCGCACACTCGATCATATCCGCTTAAC 1559
Query 1702 TGGAACTTTTCCTTTGTGA 1720
||||||||||||||||||
Sbjct 1560 AGGAACTTTTCCTTTGTGA 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71685841090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5