BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39850.1
Length=2634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483019 jgi|Araly1|483019|fgenesh2_kg.4__2079__AT2G39850.1 3783 0.0
> Ahg483019 jgi|Araly1|483019|fgenesh2_kg.4__2079__AT2G39850.1
Length=2385
Score = 3783 bits (2048), Expect = 0.0
Identities = 2281/2392 (95%), Gaps = 21/2392 (1%)
Strand=Plus/Plus
Query 127 AAGATTGTTCTGGTGAGTGAGTGAGGGATGGCTATAGCTTTTCATACCTTTCTTCTTCAA 186
||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1 AAGATTGTTCTAGTGAGTGAGTGGGGGATGGCAATAGCTTTTCATACCTTCCTTCTTCAA 60
Query 187 CTGCTACTCTTCTTCTTTGCTTCTTTTGCGGAAGCAAACGACTCGCGAAAGACATACCTT 246
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 61 CTGCTACTCTTCTTCTTTGCTTCTTTTGCGGAAGCAAATGACACGCGAAAGACATACCTT 120
Query 247 GTGCAGATGAAAGTTGGTGGA-CATCGATATGGGTCAAGTTCCGGTCACCAGGAACTACT 305
|||||||| |||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 121 GTGCAGATAAAAGTTGG-AGAGCATCCATATGGGTCAAGTTCCGGTCACCAGGAACTACT 179
Query 306 AGGCGAAGTTCTTGACGACGATAGCACCTTAGCGGATGCATTTATCTACAGCTATAAGGA 365
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 CGGCGAAGTTCTTGACGACGATAGCACCGTAGCGGATGCATTTATCTACAGCTATAAGGA 239
Query 366 GAGCTTCACCGGTTTCTCGGCAAGTCTCACACCAAGAGAACGGCAAAAGCTGATGAGGAG 425
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 240 GAGCTTCACCGGTTTCTCGGCAAGTCTCACACAAAGTGAACGGCAAAAGCTGATGAGGAG 299
Query 426 AAGAGAAGTATTGGAAGTTTCACGTAGCAGAAACCTAAAGCTTCAAACGACAAGATCATG 485
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGAGAAGTATTGGAAGTGTCACGTAGCAGAAACCTAAAGCTTCAAACGACAAGATCATG 359
Query 486 GGACTTCATGAATCTAACATTAAAAGCTGAGCGAAATCCCGAGAATGAGAGTGATTTGGT 545
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 360 GGACTTCATGAATCTAACATTAAAAGCTGAGCGCAATCTCGAGAATGAGAGTGATTTGGT 419
Query 546 TGTGGCTGTCATCGATTCCGGCATTTGGCCCTACTCTGAGCTCTTCGGTAGCGATAGCCC 605
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GGTGGCTGTCATCGATTCCGGCATTTGGCCTTACTCTGAGCTCTTCGGTAGCGATAGCCC 479
Query 606 TCCCCCTCCTGGTTGGGAAAACAAATGCGAAAACATAACTTGCAACAACAAGATCGTTGG 665
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCCTCCTCTTGGTTGGGAAAACAAATGCGAAAACATAACTTGCAACAACAAGATCGTTGG 539
Query 666 GGCTAGATCATACTACCCGAAAAAAGAAAAGTACAAGTGGGTTGAAGAGAAATCGGTGAT 725
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGCTCGATCATACTACCCGAATAAAGAAAAGTACAAGTGGGTTGAAGAGAAATCGGTGAT 599
Query 726 TGACGTGACGGGACACGGCACACACGTAGCCTCCATTGTTGCTGGCAGGAAAGTAGAGAA 785
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 600 TGACGTGACGGGACACGGCACACACGTGGCCTCCATTGTTGCCGGCAGGAAAGTAGAGAA 659
Query 786 GGCGGGGTACTTTGGGTTAGCGGAAGGCACGATGAGAGGCGGTGTTCCCAACGCGAAGAT 845
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 GGCGGGCTACTTTGGGCTAGCGGAAGGCACGATGAGAGGCGGTGTTCCCAACGCAAAGAT 719
Query 846 CGCCGTTTATAAAACATGTTGGAGAGTAATAAGAAAAAATGGTAGAGAGGATTCAGTTTG 905
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 720 CGCCGTTTATAAAACATGTTGGAGAGTAATAAGAAAAGATGGTAGAGAGGATTCAGTTTG 779
Query 906 TCGAGAAGATAATATCTTGAAGGCAATAGATGATGCGATCGCGGACAAGGTCGACATCAT 965
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 780 TCGAGAAGATAATATCTTGAAGGCAATAGATGATGCGATCGAGGACAAGGTTGACATCAT 839
Query 966 CTCGTATTCTCAGGGGTTTCA-ATTTACGCCACTGCAAAAAGATAAAGTCTCTTGGGCGT 1024
||||| |||||||||||| | || || | || |||||||| |||||| | |||||||
Sbjct 840 ATCGTACTCTCAGGGGTTT-ATATCTA-G--GCTTCAAAAAGAAAAAGTCGCGTGGGCGT 895
Query 1025 TCTTGAGAGCACTTAAGAATGGAATTTTGACTTCAGCCGCGGCAGGGAACTATGCGAACA 1084
|||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 896 TCTTGAGAGCACTTAAGAATGGAATTTTGACTTCAGCCGCAGCCGGGAACTATGGGAAC- 954
Query 1085 ATGGGAAGTTTTATTACACTGTTGCCAATGGCGCACCTTGGGTCATGACCGTTGCAGCGA 1144
| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 -T----A---TTATTACACTGTTGCCAATGGCGCACCTTGGGTCATGACCGTTGCAGCGA 1006
Query 1145 GCTTGAAAGATAGAATA-TTCGAGACTAAGTTGGAGCTGGAAGGAGAAGATAAGCCAATT 1203
||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GCTTGAAAGATAG-ATATTTAGAGACTAAGTTGGAGCTGGAAGGAGAAGATAAGCCAATT 1065
Query 1204 ATTGTGTACGACACGATCAACACCTTTGAGACTCAAGATTCTTTCTACCCGCTTTTGAAT 1263
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | ||
Sbjct 1066 ATTGTGTACGACACGATCAACACCTTTGAGACACAAGATTCTTTCTACCCACTTTGGGAT 1125
Query 1264 GAAAAAGCACCCCCTGAATCAACAAGAAAACGTGAACTCATCGCTGAGAGAAACGGTTAC 1323
||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1126 GAAAAAGCATCCGCTGAATCAACAAGAAAACGTGAACTCATCGCTGAGAGCAACGGTTAC 1185
Query 1324 TCAATATTGTCTAATTATGATGAGAAGGACAAAGGAAAAGATGTTTTCTTCGAATTCGCT 1383
|||| |||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 1186 ACAATCTTGTCTAA--CT-ATGAGAAGGATGAAGGAAAAGATGTTTTCTTCGAATTCGCT 1242
Query 1384 CAAATCAACCTCTTGGACGAAGCGATTAAAGAGAGAGAGAAAGGCGCAATCGTATTGGGA 1443
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 CAAATCAACCTCTTGGACAAAGCGATTAAAGAGAGAGAGAAAGGCGCAATCGTATTGGGA 1302
Query 1444 GGAAAATCTTACGACTTCAATGAGTCGATAAAGTTACAGTTTCCTATCGCTTCTATATTT 1503
|| | ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||
Sbjct 1303 GGTAGATCTTACGACTTCAATGAGTCGAAAAAGTTACAATTTCCTATCACTTCTATATTT 1362
Query 1504 TTGGACGAACAAAAGAAAGGTAAACTATGGGACTACTATAAAAAAGATCAAAGCAAAGAA 1563
|||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1363 TTGGACAAACAAAAGCAAGGTAAACTATGGGAGTACTATAAAAAAGATCAAAGCAAAGAA 1422
Query 1564 CGTTTAGCCAAAATTCACAAGACCGAGGAGATTCCACGAGAAGAGGGATGGGTTCCAACT 1623
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1423 CGTTTAGCCAAAATTCACAAGACAGAGGAAATTCCACGAGAAGAGGGATGGGTTCCAACT 1482
Query 1624 GTTGCTCACTTATCATCGAGGGGTCCTAATTGTGACAGTTTCCTAGCAAACATTCTCAAG 1683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 GTTGCTCACTTATCATCGAGGGGTCCTAATTGTGACAGTTTCCTAGCAAACATTCTCAAG 1542
Query 1684 CCCGATATAGCTGCTCCGGGGTTAGACATCATAGCGGGTTGGCCTGAGAATGTGAAACTA 1743
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1543 CCCGATATAGCTGCTCCGGGGTTGGACATCATAGCGGGTTGGCCCGAGAATGTGAAACTT 1602
Query 1744 TCGTCAGACCGCCCCGCCAACGATTACCGCCATCTCAGATTCAACATAATGTCAGGAACT 1803
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 TCGTCAGACCGCCCCTCCAACGATTACCGCCATCTCAGATTCAACATAATGTCAGGAACT 1662
Query 1804 TCCATGGCTTGCCCTCACGCCACTGGACTTGCCTTGTACCTCAAGTCGTTCAAACGTTGG 1863
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1663 TCCATGGCTTGCCCTCACGCCACTGGACTTGCCTTGTACCTCAAGTCGTTTAAACGTTGG 1722
Query 1864 TCTCCATCCGCTATTAAATCTGCCCTCATGACCACTTCCTCAGAAATGACAGATGACGAC 1923
||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| | |
Sbjct 1723 TCTCCATCCGCTATTAAATCTGCCCTCATGACCACTTCCACGGAAATGACGGATGAGGGC 1782
Query 1924 AACGAGTTTGCATATGGGTCAGGTCACTTAAACGCTACAAAAGTCCGAGACCCGGGTTTG 1983
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1783 TACGAGTTTGCATATGGGTCAGGTCACTTAAACGCTACAAAAGTCCGAGACCCGGGATTG 1842
Query 1984 GTCTACGAAACACATTACCAAGACTACATAGATTACTTGTGCAAACTAGGTTACAACACC 2043
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1843 GTCTACGAAACACATTACCAAGACTACATAGATTACATGTGCAAACTAGGTTACAACACC 1902
Query 2044 GAGAAGCTAAGATCACACGTTGGAAGCGACAAGATAGATTGCTCCAAGACAGAGATAGAC 2103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 GAGAAGCTAAGATCACACGTTGGAAGCGACAAGATAGATTGCTCCAAGACAGAGATAGAC 1962
Query 2104 CACGACGCGGACCTCAACTATCCAACCATGACGGCTCGAGTACCCCTGCCCCTGGACACC 2163
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1963 CACGACGCCGACCTCAACTATCCAACCATGACGGCTCGAGTCCCCCTGCCCCTGGACACC 2022
Query 2164 CCATTCAAAAAAGTCTTCCATAGAACGGTCACAAACGTTAACGACGGAGAATTCACTTAC 2223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2023 CCATTCAAAAAAGTCTTCCATAGAACGGTCACAAACGTTAACGACGGAGAATTCACTTAC 2082
Query 2224 CTCCGAGAAATCAACTACCGAGGTGACAAGGACTTTGACGAGATCATTGTGGATCCTCCA 2283
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2083 CTCGGAGAAATCAACTACCGAGGTGACAAGGACTTTGACGAGATCATTGTGGATCCTCCA 2142
Query 2284 CAGCTAAAATTTAGCGAGTTGGGAGAGACCAAGACTTTTACGGTGACTGTCACCGGAATA 2343
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2143 CAGCTAAAATTTAGCGAGTTGGGAGAGACCAAGACTTTCACGGTGACTGTCACCGGAATA 2202
Query 2344 TCGAAGCGGAATTGGAACAAGAACAGGGCGTTTATGACAAGGAACACGTGGCTCACGTGG 2403
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2203 TCGAAGCGGAATTGGAAGAAGAACAAGGCGTTTATGACAAGGAACACGTGGCTCACGTGG 2262
Query 2404 ACGGAGAAAGATGGTTCCCGCCAAGTCAGGAGTCCCATTGTCATATACTCAATAAAAGGA 2463
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 2263 ACGGAGAAAGACGGTTCCCGCCAAGTCAGGAGTCCGATTGTCATATACTCAATTAACGGA 2322
Query 2464 CCAAAAGCTTGCATGTGAATTCCCCAAGAAGTCAAGAACTGAAGCTGCCACT 2515
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2323 CCCAAAGCTTGCATGTGAATTCCCCAAGAAGTCAAGAACTGAAGCTGCCACT 2374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99339358960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5