BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39851.1
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483020 jgi|Araly1|483020|fgenesh2_kg.4__2080__AT2G39851.1 721 0.0
> Ahg483020 jgi|Araly1|483020|fgenesh2_kg.4__2080__AT2G39851.1
Length=565
Score = 721 bits (390), Expect = 0.0
Identities = 519/578 (90%), Gaps = 21/578 (4%)
Strand=Plus/Plus
Query 3 AAATCACAATATAGAATATTCTATCCAAATCTCAAATCTTTAATCTCTCAGCAATATAAT 62
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 AAATCACAATATAGATTATTCTATCCAAATCTCAAATCTTTAATCTCT---CAATATAAT 57
Query 63 TCTTAG-AGATTTTATTGAAATGACTTCCCAAATATTGTTGATTTTCATAGCATTTTCAG 121
|||||| | ||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 58 TCTTAGCA-ATTTTATTGAAATGATTTCCCAAATATTGTTGATTTTCTTAGCATTTTCAG 116
Query 122 TTTTCGTCGTATGTTCGAGTAGAACTTTGGGGCCAGCTCCGGACAATCAGCAAATGAA-G 180
||| ||||||||||||||||||| | ||||||||| |||||||||||| || |||||| |
Sbjct 117 TTTCCGTCGTATGTTCGAGTAGAGCGTTGGGGCCATCTCCGGACAATCCGCTAATGAAGG 176
Query 181 TGTTATCTCGTCAATGTTGATTTTGCATTGTATCATGGTGACTGTAAGCAATACCAACAA 240
| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 177 T-TTATCTCGTCCATGTTGATTTTGAATTGTATCATGGTGACTGTAAGCAATACCAACAA 235
Query 241 CTTCTCAAAAAGGTGGTTCACGGAAGGTCAGCAAAAGATGCTCTTGTATATTGCTACAAG 300
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 236 CTTCTCAAAAAGGTGGTTCACGGAAGGTCACCAAAAGATGCTCTTATATATTGCTACAAG 295
Query 301 GAAGTCATGAGCGGGTTTGCAGCAAAACTGACCGCTGCAGAGGCTGAAAAATTAAAGGGT 360
|||||| ||||||| |||||||||||||| |||| || ||||||| ||||||||| |||
Sbjct 296 GAAGTCGTGAGCGGCTTTGCAGCAAAACTTACCGATGAAGAGGCTAAAAAATTAATTGGT 355
Query 361 GAGAAAGGGATTTCTGCTATAGATGTAGACCACA-TATTCTCCATGGACGTCGAACCCCA 419
|| |||||||||| || | |||||| |||| | | ||| ||||||| ||||||||||| |
Sbjct 356 GAAAAAGGGATTTATGGTGTAGATGAAGACGA-AGTATACTCCATGAACGTCGAACCCTA 414
Query 420 TAGCCAT-GG----CAAAGGATATTAACAACTAGTTGCTTAATATTGTAAGGGttttttc 474
||||||| || ||||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct 415 TAGCCATAGGTTGGCAAAGGATATTAATAACTAGTTACTTAATATTGTAAGGGTTTTT-C 473
Query 475 tttttGTTCGGTAAATCACTCTTGTAAGGTTCACTTGAAAACTTGGAAAGAACTAATAAC 534
|||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 474 TTTTGGTTCGGTAAATTACTCTTGTAAGGTTCACTTGAAAACTTGG------CTAAAAAC 527
Query 535 AAAAGAAAGGATGATTTGAAATGAAATATATTAACTAA 572
|||||| ||||||||||||| ||||||||||||| |||
Sbjct 528 AAAAGAGAGGATGATTTGAACTGAAATATATTAAATAA 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21176351895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5