BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39855.1
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321676 jgi|Araly1|321676|fgenesh1_pm.C_scaffold_4001733 532 1e-150
Ahg485995 jgi|Araly1|485995|fgenesh2_kg.5__1987__AT3G55646.1 171 1e-41
> Ahg321676 jgi|Araly1|321676|fgenesh1_pm.C_scaffold_4001733
Length=429
Score = 532 bits (288), Expect = 1e-150
Identities = 331/352 (94%), Gaps = 2/352 (1%)
Strand=Plus/Plus
Query 169 ATGGACAAGAAAAAGTCGGTATCTGGTTCCTCTTCATCGTCCTCTTCGTCGTTGGATCAT 228
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1 ATGGACAACAAAAAGTCGGTATCTGGTTCTTCTTCATCTTCCTCTTCGTCGTTGGATCAT 60
Query 229 ATTTTTGGTCCAAGAGTCTC-TCACTCGTATTCTTCATCAACAACAGGATTGTTCAAATC 287
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||
Sbjct 61 ATTTTTGGTCCAAGAGTCTCTTC-CTCGTCTTCTTCATCAACAACAGGATTGTTCCAATC 119
Query 288 CATCTTCCCACCACCTTCAGCGGTGACGCAAGGGAACTTGACAAGTCGAAATGGAGCTGC 347
||| ||||||| ||||||| |||||| ||||| ||||| | |||||||||||| ||||||
Sbjct 120 CATTTTCCCACTACCTTCAACGGTGATGCAAGCGAACTCGGCAAGTCGAAATGAAGCTGC 179
Query 348 CAAGTATCAACCTACAAATTTTGAGACTCCAAATGAAAGAGGTGAAAGGAGCAAAAATAA 407
||| |||||| |||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 180 CAAATATCAAACTACAAATTTTGGGATTCCAAATGAAAGAGGAGAAAGGAGCAAAAATAA 239
Query 408 GGAGAGAAAGAGTTACCAAAGTGAAGAAACACAACCACCATGCAACTTGAGCTCATCCAT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGAGAGAAAGAGTTACCAAAGTGAAGAAACACAACCACCATGCAACTTGAGCTCATCCAT 299
Query 468 ATACTATGGAGGCCAAGATAACTATTCCTCTTCAACTACCAATCCAGATGCT 519
|||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 ATACTATGGAGGCCAAGATAACTATTCCTCTTCAACCACCAATCCAGATGCT 351
Score = 128 bits (69), Expect = 8e-29
Identities = 75/78 (96%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 751 TATAAGAAAGATGGAGAGGAAGGTGATTCGGAAAGTGCTTCAAGAGGAAACTGGTGGGAA 810
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 352 TATAAGAAAGATGGAGAGGAAGGCGATTCCGAAAGTGCTTCAAGAGGAAACTGGTGGGAA 411
Query 811 GGATCGTTTAATTACTAA 828
||||||||||| ||||||
Sbjct 412 GGATCGTTTAACTACTAA 429
> Ahg485995 jgi|Araly1|485995|fgenesh2_kg.5__1987__AT3G55646.1
Length=916
Score = 171 bits (92), Expect = 1e-41
Identities = 233/298 (78%), Gaps = 22/298 (7%)
Strand=Plus/Plus
Query 208 TCCTCTTCGTCGTTGGATCATATTTTTGGTCCAAGAGTCTC-TCACTCGTATTCTTCATC 266
||| |||| || || |||||||||||||| ||||||||||| || |||| |||||||||
Sbjct 197 TCCGCTTCATCTTTCGATCATATTTTTGGGCCAAGAGTCTCTTC-TTCGTCTTCTTCATC 255
Query 267 AACAACAGGATTGTTCAAATCCATCTTCCCACCACCTTCAGCGG-TGACGCAAGGGAACT 325
| || ||||||||||||||||||||||||||||| || |||| | | | ||||
Sbjct 256 GGCCACTGGATTGTTCAAATCCATCTTCCCACCACCCTCTGCGGATCA-GTTGGGGAG-- 312
Query 326 TGACAAGTCGAAATGG-A-GCTGCCAAGTATCAACCTACAAATTTTGAGA-CTCCAAATG 382
| ||||| || | | | | | | ||| | || | || | | | | |||||||||
Sbjct 313 -G-CAAGTGGACTTTGCAAG-T-C-AAGG-TGGACATGTGAAGTATCA-ATCTCCAAATG 365
Query 383 AAAGAGGTGAAAGGAGCAA-AAATAAGGAGAGAAAGAGTTACCA-AAGTGAAGAAACACA 440
| ||||| ||||| ||||| ||| ||||||| |||||||||| | || ||| |||||| |
Sbjct 366 AGAGAGGAGAAAGAAGCAACAAA-AAGGAGAAAAAGAGTTACTATAA-TGAGGAAACAGA 423
Query 441 ACCACCATGCAACTTGAGCTCATC-CATATACTATGGAGGCCAAGATAACTATTCCTC 497
|||||||||| ||||||||||||| | | ||||||||||||||||| || ||||||||
Sbjct 424 ACCACCATGCCACTTGAGCTCATCACTT-TACTATGGAGGCCAAGAGAAATATTCCTC 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39838448265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5