BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39870.1
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483023 jgi|Araly1|483023|fgenesh2_kg.4__2083__AT2G39870.1 1439 0.0
> Ahg483023 jgi|Araly1|483023|fgenesh2_kg.4__2083__AT2G39870.1
Length=1541
Score = 1439 bits (779), Expect = 0.0
Identities = 1130/1288 (88%), Gaps = 70/1288 (5%)
Strand=Plus/Plus
Query 31 tttttttC-TTTGGATTTCCAAGGCAAAATAGTTAAGAAAAGACCAAAGGAAAATAGTTT 89
|||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTTTTCTTTTGG-TTTCCAATGCAAAATAGTTAAGAAAAGACCAAAGGAAAATAGTTT 59
Query 90 TGATTTTCGTCCATCACGCATTAATTACGGATAATTATTATATTAAGAAGGaaaaaaaaa 149
|||||||||||||||||||||||||||||||| | |||||||| || | |
Sbjct 60 TGATTTTCGTCCATCACGCATTAATTACGGAT-A--ATTATATT---AA-G--------A 104
Query 150 aacaaaaaaaaGCAGAAGTGATATTAAAGTGCTTTTGAGCTGTCTC-------GTAGAAA 202
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 105 AA-AAAAAAAAGCAGAAGTGATATTAAAGTGCTTTTGAGCTGTCTCATAGAAAGTAGAAA 163
Query 203 CCATGAAACCTTAATAAAAGCAACCTTGTCTTCAACATTCTCCATCTTCCTCCTCACTTA 262
||||||||||||||| || || | ||||||||||||||||||||||||||||
Sbjct 164 CCATGAAACCTTAAT--AA--AA----G----CAACATTCTCCATCTTCCTCCTCACTTA 211
Query 263 ATCCCCAAGTTCACACTTCAAATCCActct-t-t--ctat-ttct-ctccttcttcttct 316
|| || ||||||||||||||| ||||||| | | || | ||| || | |||||||||
Sbjct 212 AT-CCTTAGTTCACACTTCAAAACCACTCTCTCTCCCTCTCCTCTGCTTCATCTTCTTCT 270
Query 317 atgtctcgcctcc-t-c-cctcct-c--atctctccgtcaaccttcctACCATGGAGAAA 370
||||||| ||||| | | |||||| | ||||||||||||||| ||||| ||||||||||
Sbjct 271 ATGTCTCACCTCCTTCCTCCTCCTCCTTATCTCTCCGTCAACCATCCTATCATGGAGAAA 330
Query 371 ACTACTTCTTCCGAGTTAACCCCAACTCGACTCGGTTTTCCTAACGAGTTCCCTTACGAG 430
||| ||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 331 ACTCCTTCTTCCGAGCTAACCCCAACTCGACTCGGTTTCCCTAACGAGTTTCCTTACGAG 390
Query 431 TTCGACTCTCCTTCCTTCTCCCCTGGTTTCACTTCTCCCGGTGACTCCACTGAGACGGAA 490
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 391 TTCGACTCTCCTTCCTTCTCCCCTGGTTTCACTTCTCCCGGTGACTCCACCGAGACGGAA 450
Query 491 GACGAAAGCAGTGATGACGAGGAAGACTTCCTCGCTGGGTTAACTCGCCGACTCGCTCCT 550
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GACGAAAGCAGTGACGACGAGGAAGACTTCCTCGCTGGGTTAACTCGCCGACTCGCTCCC 510
Query 551 TCGACTCAGCGTCT---TCCT--TCC-CCTCTCTTCAAGTCTGAGGAGAAACGTCAAGTT 604
|||||||||||||| |||| ||| ||||||| |||| |||||||||||||||||||
Sbjct 511 TCGACTCAGCGTCTCCCTCCTCCTCCTCCTCTCTACAAGACTGAGGAGAAACGTCAAGTG 570
Query 605 GCAGCTACTTCACCACAGTCAACACTGAGTGGACTCGGAAGCTTTTCAAACTCAGGAAGT 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 GCAGCTACTTCACCACAGTCAACACTGAGTGGACTCGGAAGCTTTTCAAACTCAGGAAGT 630
Query 665 AGAAGCCCTATCCTT-CCATCTCCACCGGCTCCTACGTCATCATTTC-GTAGAGACAACG 722
|||||||||||| || ||||| ||||||||||||||||| || |||| |||||||||| |
Sbjct 631 AGAAGCCCTATC-TTACCATCCCCACCGGCTCCTACGTCTTC-TTTCCGTAGAGACAATG 688
Query 723 CGTGGGATGTGATTTCTGCGGCTGCTGGAGAAGTCGCTAGACTTAAGCTCGGAAGCTACG 782
| ||||||||||| ||||| |||||||||||||| |||||||| || || ||||||||||
Sbjct 689 CTTGGGATGTGATATCTGCAGCTGCTGGAGAAGTAGCTAGACTCAAACTTGGAAGCTACG 748
Query 783 AGCCTCATCACCTTCCCCTTCAAACCCCTGAGTCTCTTCTCCGCCGTCAAAACGCTGCCA 842
|||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 749 AGCCTCATCATCTTCCACTTCAGACCCCTGAGTCTCTTCTACGCCGTCAAAACGCGGCGT 808
Query 843 TACATGCTGAACTCCAACACCAGCGTCTCATCGAACAGATGTGGCTCTGCTCTGCTCAGT 902
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 809 TTCATGCTGAACTCCAACAGCAGCGTCTCATCGAACAGATGTGGCTCTGTTCTTCTCAGT 868
Query 903 CAAGATTCAAGCTCTCAGAGAATCGT-ATCCCAAGGAGAGT-AGTTAATGAAGAAGGCT- 959
||||| | ||||| || ||||||| | | ||| |||||||| | | || || |||| |
Sbjct 869 CAAGAATAAAGCTTTCGGAGAATCATCA-CCCGAGGAGAGTTA-TGAACGACGAAGT-TG 925
Query 960 TATTTGAGAATCCGAGATACGTGAGACGCAACAATCCTACGTGGTTGCCTCCGCAACAAG 1019
| ||||||||||||||||||||||||| |||||||||||| |||||| | ||||||| |
Sbjct 926 TGTTTGAGAATCCGAGATACGTGAGACACAACAATCCTACATGGTTGTCGACGCAACACG 985
Query 1020 CCGCAGCTCCT-TTGAAACGTCCTTCTGCTGGAACCGGTGTTTTTCTTCCCCGGCGATAC 1078
||| ||||| || |||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct 986 CCGTTGCTCCCCTT-AAACGTCCTTCTGCCGGTACCGGAGTTTTCCTTCCCCGGCGATAC 1044
Query 1079 CCATCGGCCGCC-CCTTCCGATTCCCTGAAAACACCAGTCAACACTCCAGCTATGTTGCA 1137
||| | || || ||||||||||| ||||||| |||||||||| ||||||||||||||||
Sbjct 1045 CCAACAACC-CCTCCTTCCGATTCTCTGAAAAAACCAGTCAACCCTCCAGCTATGTTGCA 1103
Query 1138 GCCTAAAGTGAAACCTCAAAATCTCAACTTTGATGAGTTCACCAATATTGTTGGGCCAAG 1197
|||||||||| | |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1104 ATCTAAAGTGAATCAACAAAATCTCAACTTTGATGAGTTCACCAATGTTGTTGGTCCAAG 1163
Query 1198 GCGTAGCCAATTCGATTACGAGTGCATGTTGGCGAGAAGTACAGTACTTGCTCGTCAGGG 1257
|||||| || |||||||||||||||||| | || |||||| || |||| |||||||||||
Sbjct 1164 GCGTAGTCAGTTCGATTACGAGTGCATGCTAGCCAGAAGTTCACTACTAGCTCGTCAGGG 1223
Query 1258 AAATTTCAGAGCAGTTAGTGGTGGTGGT 1285
|||||||||| |||||||||||||||||
Sbjct 1224 AAATTTCAGATCAGTTAGTGGTGGTGGT 1251
Score = 298 bits (161), Expect = 9e-80
Identities = 195/210 (93%), Gaps = 7/210 (3%)
Strand=Plus/Plus
Query 1515 TATGTATTTTTAGTTACTAAGACCAAGCTCTCTGTAAtttttttGTTGACCTTGGGAGGG 1574
|||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1337 TATG-ATTTTTAGTCACTAAGACAAAGCTCTCTGTAATTTTTTTGTTGACCTT-GGAGGG 1394
Query 1575 TTTTTAA-GGAGTGGAGTGGGGAAATTGAAAATTTGTTGGGTGGGATTTGTTATTTGTGA 1633
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1395 --TTTAAGGGAGTGGAGTGGGGAAATTGAAAATGTGTTGGGTGGGATTTGTTATTTGTGT 1452
Query 1634 TACATAAATAGTGTTTTCTGCTATTTTTGGTAAAATCTAAT-GGGTCTGTAGTAAAAACA 1692
||| ||||||||||||||||||||||||| ||| ||||||| |||| |||| ||||||||
Sbjct 1453 TACTTAAATAGTGTTTTCTGCTATTTTTGATAATATCTAATGGGGT-TGTAATAAAAACA 1511
Query 1693 TCGGAATTATTTTGTTTGTTTATTAATAAT 1722
||||||||||||||||||||||||||||||
Sbjct 1512 TCGGAATTATTTTGTTTGTTTATTAATAAT 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5