BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39880.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901922 jgi|Araly1|901922|Al_scaffold_0004_2572 1210 0.0
Ahg887669 jgi|Araly1|887669|Al_scaffold_0612_1 340 1e-92
> Ahg901922 jgi|Araly1|901922|Al_scaffold_0004_2572
Length=1149
Score = 1210 bits (655), Expect = 0.0
Identities = 1005/1162 (86%), Gaps = 71/1162 (6%)
Strand=Plus/Plus
Query 1 ATGAACGGAGAAATCTCTC-GTCCGCCGGAGCTAATATCGTCCCGGAATCC--TT-GCAA 56
|||||| ||||||||||| | |||||||||||||| |||| | |||||| || |
Sbjct 1 ATGAACTCAGAAATCTCTCAG-CCGCCGGAGCTAATGCCGTCGCTGAATCCGTTTAG-TG 58
Query 57 GAG-T--T-T-T--GAAAATGCAATACACAAAGCAGTTGAGGCAGAGCTCGCCGAGCTAG 109
| | | | | | ||| || ||||| || ||||| |||||||||||||||||| |||
Sbjct 59 GTGTTGATATCTCGGAAGATACAATAAACGCTGCAGTCGAGGCAGAGCTCGCCGAGTTAG 118
Query 110 CGAAAAGCGACGCGAACGGCGGCGGAAAGAGTAAAGTGAAAGGACCTTGGT-TGCCGGAG 168
||||||| ||| |||||||||| ||||||||||||||||||||| |||||| | ||||||
Sbjct 119 CGAAAAGTGACTCGAACGGCGGAGGAAAGAGTAAAGTGAAAGGATCTTGGTCT-CCGGAG 177
Query 169 CAAGATGAGGCTCTCACGAGGCTTGTGAAAATGTGTGGGCCGAGGAACTGGAATCTAATC 228
||||||||||||||||||||||||||||||| |||||||||||| || |||| ||| ||
Sbjct 178 CAAGATGAGGCTCTCACGAGGCTTGTGAAAAAGTGTGGGCCGAGAAATTGGACTCTGATG 237
Query 229 TCCCGTGGAATCCCAGGTCGCTCTGGTAAATCTTGCCGATTACGTTGGTGTAATCAGCTC 288
|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 238 TCTCGTGGAATCCCAGGTCGTTCTGGTAAATCTTGCCGATTGCGTTGGTGTAATCAGCTC 297
Query 289 GATCCTATCCTCAAACGAAAACCTTTCTCTGATGAGGAGGAGCATATGATAATGTCTGCA 348
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 298 GATCCTAACCTCAAACGAAAACCTTTCTCTGATGAGGAGGATCATATGATAATGTCTGCA 357
Query 349 CAGGCGGTTCTTGGGAACAAATGGTCTGTGATTGCTAAACTCTTACCTGGGAGAACAGAT 408
|| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 358 CACGCGGTTCTTGGGAACAAATGGGCTGTGATTGCTAAACTCTTACCAGGGAGAACAGAC 417
Query 409 AATGCCATTAAGAATCATTGGAACTCTAA-TCTTAGACGTAAACCAGCAGAACAATGGAA 467
|||||||||||||||||||||||||| || ||||||||||||||||||||| | |||||
Sbjct 418 AATGCCATTAAGAATCATTGGAACTC-AAGTCTTAGACGTAAACCAGCAGATCTGTGGAA 476
Query 468 GATTCCTCTATTGATGTCTAATACAGA-GATAGTATATCAACTGTATCCATCAATGGTCA 526
| ||||||||||||||||| ||||||| || | |||||||| || ||||||||| |||||
Sbjct 477 GGTTCCTCTATTGATGTCTTATACAGAAGAAA-TATATCAAATGCATCCATCAAAGGTCA 535
Query 527 GAAGGATATCAAACGCATCCCCCAAAGA--A-CATCTACCTCAAGAAGAAGAAACCGGTG 583
||| ||||||||| |||||| | ||||| | |||||||||| || |||||||||| |
Sbjct 536 GAAAGATATCAAATGCATCCACTAAAGAGGAGCATCTACCTC--GA-GAAGAAACCGATT 592
Query 584 TA-TTAAG--TGATG-ATAAAATGGATGATGAAGCAAAGGAGCCTCCTCGGGAGCAAAAT 639
| ||| | | | || ||||| |||| | ||||| |||||||||||||| |||||
Sbjct 593 TGGTTACGCCTCCCGTATTAAATG-ATGA--A-GCAAACGAGCCTCCTCGGGAACAAAAG 648
Query 640 AGTAAAACTGGTGTTTATCGTCCAGTGGCTCGAATGGGTGCTTTCAGTGTCTGTAAACCA 699
|||||| ||| | ||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 649 AGTAAACCTGATATTTATCGCCCAGTGGCTCGAATTGGTGCTTTCAGTGTCTGTAAACCA 708
Query 700 GGATACATG---G-C--T----C-C-ATGTGAGGGACCTTTGGTTCAAGCATCAAGACCT 747
||||||||| | | | | | |||||||||| |||| ||||||||||||||||||
Sbjct 709 GGATACATGAACGACCATATGGCTCCATGTGAGGGATCTTTAGTTCAAGCATCAAGACCT 768
Query 748 GACTCATTGGCTGGTAAATTTCTTCAGTCTCTTTGTTATGATCCTATTATCCCTTCAAAA 807
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 769 GACTCATTGGCTGGTAAATATCTTCAGTCTCTTTGTTATGATCCTATCATCCCTTCAAAA 828
Query 808 TGCGGTCACGGTTGCTGCAACCATCAAGACAGCACAAC-ACTGTCATCATCGT----C-- 860
||||||||||||||||||||||||||||||| || ||| | |||||||||||| |
Sbjct 829 TGCGGTCACGGTTGCTGCAACCATCAAGACAACAAAACGA-TGTCATCATCGTGTAACTC 887
Query 861 GGTGCTGGGATCAGAGTTTGTGGATTATGAGGAACATTCTTCTGCAGAGTTAGATAAAGA 920
|||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 888 GGTGCTGGGACCAGAGTTTGTGGATTATGAGGAACGTTCTTCTGCAGAGTTAGACCAAGA 947
Query 921 ATTGATCTCTATATCAAATGACCTGAACAATACTGCTTGGATTAGGAGTGGGA--A---- 974
||||||||||||||||| ||||||||||||| |||||||| ||||||||||| |
Sbjct 948 ATTGATCTCTATATCAACCGACCTGAACAATATTGCTTGGACTAGGAGTGGGATTAACAA 1007
Query 975 ------------GGAAGCTGAACAGAGTTTGAAGGCTGATGATCAGTTTCGTCGTGAGTA 1022
||||||||||| |||||||||||||||||||||||||| |||||| ||
Sbjct 1008 CAACTATTTTAAGGAAGCTGAACCGAGTTTGAAGGCTGATGATCAGTTTCATCGTGAATA 1067
Query 1023 TGCTCACTCGAAATTTAGTGGAATGGTAAACAATGGTGTATCAAGTCAGATGGTGAGACA 1082
|||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1068 TGCTCAGGCGAAATTTACTGGAATGGTAAACAATGGTGTATCAAGTCAGATGCTGAGACA 1127
Query 1083 AGATTTAAGGGCTTTGAGCTAA 1104
||||||||||||||||||||||
Sbjct 1128 AGATTTAAGGGCTTTGAGCTAA 1149
> Ahg887669 jgi|Araly1|887669|Al_scaffold_0612_1
Length=384
Score = 340 bits (184), Expect = 1e-92
Identities = 221/239 (92%), Gaps = 2/239 (1%)
Strand=Plus/Plus
Query 82 GCAGTTGAGGCAGAGCTCGCCGAGCTAGCGAAAAGCGACGCGAACGGCGGCGGAAAGAGT 141
||||| |||||||||||||||||| |||||||||| ||| |||||||||| |||||||||
Sbjct 91 GCAGTCGAGGCAGAGCTCGCCGAGTTAGCGAAAAGTGACTCGAACGGCGGAGGAAAGAGT 150
Query 142 AAAGTGAAAGGACCTTGGT-TGCCGGAGCAAGATGAGGCTCTCACGAGGCTTGTGAAAAT 200
|||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 151 AAAGTGAAAGGATCTTGGTCT-CCGGAGCAAGATGAGGCTCTCACGAGGCTTGTGAAAAA 209
Query 201 GTGTGGGCCGAGGAACTGGAATCTAATCTCCCGTGGAATCCCAGGTCGCTCTGGTAAATC 260
|||||||||||| || |||| ||| || || ||||||||||||||||| |||||||||||
Sbjct 210 GTGTGGGCCGAGAAATTGGACTCTGATGTCTCGTGGAATCCCAGGTCGTTCTGGTAAATC 269
Query 261 TTGCCGATTACGTTGGTGTAATCAGCTCGATCCTATCCTCAAACGAAAACCTTTCTCTG 319
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 270 TTGCCGATTGCGTTGGTGTAATCAGCTCGATCCTAACCTCAAACGAAAACCTTTCTCTG 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5