BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39890.1
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483024 jgi|Araly1|483024|fgenesh2_kg.4__2084__AT2G39890.2 2551 0.0
Ahg482636 jgi|Araly1|482636|fgenesh2_kg.4__1696__AT2G36590.1 1668 0.0
Ahg486008 jgi|Araly1|486008|fgenesh2_kg.5__2000__AT3G55740.1 1186 0.0
> Ahg483024 jgi|Araly1|483024|fgenesh2_kg.4__2084__AT2G39890.2
Length=1737
Score = 2551 bits (1381), Expect = 0.0
Identities = 1580/1669 (95%), Gaps = 41/1669 (2%)
Strand=Plus/Plus
Query 145 TTGCGAATCGAGCTGGATTCTTGGGCTCGCTTTTTCTTTCAATC--AA---AAG----TT 195
|||||||||||||||||||||||||||| ||||||||||||||| || ||| ||
Sbjct 91 TTGCGAATCGAGCTGGATTCTTGGGCTC-CTTTTTCTTTCAATCAAAAGCGAAGCTTTTT 149
Query 196 TCGATATTAGTGAAGGA-TAAAATTCGCTaaaaaaaGAGAAttttttttGTTaaaaaaaT 254
||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct 150 TCGTTATTAGTGAAGGAGAAAAATTCGCTAAAAAAAGAGAA-TTTTTTTG-TAAAAAAAT 207
Query 255 TATAAAAGCTGGCTTTCTCAAAATTTCTCCATGTGGTcgacgaagaagacgaagaagacg 314
|||||||||||||||||||||||||||| |||||||| ||||| | | |
Sbjct 208 TATAAAAGCTGGCTTTCTCAAAATTTCTTCATGTGGT------------CGAAG-A-A-G 252
Query 315 aagaagaaagagaaagTCTCTTAGCAAACATGACCGCCACCGAAGCTAAGAATCGCAAAA 374
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 253 AAGAAGAAAGAGAAAGTCTCTTAGCAACCATGACCGCCACCGAAGCTAAGAATCGCAAAA 312
Query 375 TCAATGTCGGAGATGGAGATGACGTTGTTGATATCGAAATCCCTGACACTGCTCATCAAA 434
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 313 TCAATGTCGGAGATGGAGATGATGTTGTTGATATCGAAATCCCTGACACTGCTCATCAAA 372
Query 435 TTAGCAGCGATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGT 494
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 373 TTAGCAGCGATTCATGGTTTCAGGTGGCGTTTGTTTTGACCACCGGTATAAACAGCGCGT 432
Query 495 ATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTGGATTGGTGGTGTGGTTG 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 ATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTGGATTGGTGGTGTGGTTG 492
Query 555 GTCTTCTTATTGCTACTGCAATCTCTCTTTATGCAAACACTCTAATAGCTAAGCTTCATG 614
||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 493 GTCTTATTCTTGCTACTGCAATCTCTCTTTATGCAAACACTCTCATAGCTAAGCTTCATG 552
Query 615 AGTTTGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGATTCATTTACGGTAGGA 674
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 553 AGTTTGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGATTCATTTACGGTAGAA 612
Query 675 AGGCTTATCATCTTACATGGGGATTGCAATATGTTAATCTTTTCATGATTAATTGTGGAT 734
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 613 AGGCTTATCATCTTACATGGGGATTGCAATATGTCAATCTTTTCATGATTAATTGTGGAT 672
Query 735 TCATTATCCTAGCTGGTTCCGCCTTAAAGGCTGTTTATGTGCTTTTCAGGGATGATCATA 794
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 673 TCATCATCCTAGCTGGTTCCGCCTTGAAGGCTGTTTATGTGCTTTTCAGGGATGATCATA 732
Query 795 CCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTGATTTGTGCGATTTTCGCTATTG 854
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 733 CCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTAATTTGTGCGATTTTCGCGATTG 792
Query 855 GGATTCCTCATTTATCGGCTCTTGGGGTCTGGCTTGGAGTTTCGACCTTCCTCAGTCTCA 914
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 793 GGATTCCTCATTTATCGGCTCTTGGGGTCTGGCTTGCAGTTTCGACCTTCCTCAGTCTCA 852
Query 915 TCTATATTGTTGTGGCAATCGTGCTATCGGTTAGAGATGGAGTAAAAACACCTTCAAGAG 974
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 853 TCTATATCGTTGTGGCAATTGTGCTATCTGTTAGAGATGGAGTAAAAACACCTTCAAGAG 912
Query 975 ATTACGAGATACAAGGATCATCATTGAGCAAACTTTTTACCATCACAGGAGCAGCCGCAA 1034
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 913 ATTACGAGATACAAGGATCATCATTAAGCAAACTTTTTACCATCACAGGAGCAGCCGCAA 972
Query 1035 ATCTGGTTTTCGCATTCAACACCGGGATGCTTCCAGAAATTCAGGCAACAGTGAGGCAAC 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 ATCTGGTTTTCGCATTCAACACCGGGATGCTTCCAGAAATTCAGGCAACAGTGAGGCAAC 1032
Query 1095 CAGTTGTTAAAAACATGATGAAGGCTCTATACTTTCAATTCACAGCGGGTGTTTTACCGA 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1033 CAGTTGTTAAAAACATGATGAAGGCTCTATACTTTCAATTCACAGCGGGTGTTCTACCGA 1092
Query 1155 TGTACGCAGTTACATTCATCGGATATTGGGCTTATGGATCCTCAACCTCGACCTATCTAC 1214
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1093 TGTATGCAGTTACATTCATCGGATATTGGGCTTACGGATCCTCAACCTCGACCTATCTAC 1152
Query 1215 TAAACAGTGTTAATGGCCCACTCTGGGTCAAAGCCCTTGCTAACGTCTCTGCTATCCTTC 1274
||||||| || ||||||||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct 1153 TAAACAGCGTCAATGGCCCACTCTGGGTCAAAGCCCTTGCAAACATCTCCGCTATCCTTC 1212
Query 1275 AATCTGTTATCTCTTTGCACATATTTGCGAGTCCAACATATGAGTACATGGACACAAAGT 1334
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 AATCTGTTATCTCTTTACACATATTTGCGAGTCCAACATATGAGTACATGGACACAAAGT 1272
Query 1335 ATGGGATCAAAGGAAACCCATTTGCGATAAAGAACCTGCTGTTTAGGATCATGGCGAGAG 1394
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1273 TTGGGATCAAAGGAAACCCATTTGCGATAAAGAACTTGTTGTTTAGGATCATGGCGAGAG 1332
Query 1395 GCGGGTACATAGCGGTAAGCACGCTTATCTCAGCGCTGTTGCCGTTCCTCGGTGACTTCA 1454
| |||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1333 GAGGGTACATAGCGGTTAGCACGCTTATTTCAGCGCTCTTGCCGTTCCTTGGTGACTTCA 1392
Query 1455 TGAGCCTAACTGGTGCAGTGAGCACATTCCCTCTCACATTCATTCTAGCCAACCACATGT 1514
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1393 TGAGCCTAACTGGTGCAGTGAGCACATTCCCTCTCACATTCATTTTAGCCAACCACATGT 1452
Query 1515 ACTATAAGGCAAAGAACAATAAGCTGAATGCTATGCAAAAGCTATGGCATTGGCTTAACG 1574
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1453 ACTATAAGGCAAAGAACAATAAGCTCAATGCTATGCAAAAGCTATGGCATTGGCTTAACG 1512
Query 1575 TTGTCTTCTTTAGTTTGATGTCTGTTGCTGCAGCCATTGCAGCTGTCAGACTCATCGCCG 1634
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 TGGTCTTCTTCAGTTTGATGTCTGTTGCTGCAGCCATTGCAGCTGTCAGACTCATCGCCG 1572
Query 1635 TTGATTCCAAAAATTTCCATGTTTTTGCAGATTTGTAATTCATTATATTATATAGTCAAT 1694
||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1573 TTGATTCGAAAAACTTCCATGTTTTTGCAGATTTGTAATTCATTATAT-ATATAGTCAAT 1631
Query 1695 TGTGTATCCTTTATTCTTAGGCAGGTTTATTTCTCCTG---TAAGCTTGTATTCTCTCTC 1751
||| | | ||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1632 TGTAT-T--TTTATTCTTAGGCAGGTTTATATCTCCTACCATAAGCTTGTATTCTCTCTC 1688
Query 1752 TAT-T-T----GTCTTACCATTAGAGCCTAAATAAATAAATCAAGTTCT 1794
| | | | |||||||||||||||||||||||||||||| |||||||
Sbjct 1689 TCTCTCTCTCCGTCTTACCATTAGAGCCTAAATAAATAAATAAAGTTCT 1737
> Ahg482636 jgi|Araly1|482636|fgenesh2_kg.4__1696__AT2G36590.1
Length=1513
Score = 1668 bits (903), Expect = 0.0
Identities = 1184/1320 (90%), Gaps = 17/1320 (1%)
Strand=Plus/Plus
Query 359 GCTAAGAATCGCA-AAATCAATGTCGGAGATGGAGATGACGTTGTTGATATCGAAATCCC 417
||||||||||||| ||| ||||||| | || || | || ||||||||||||||||||
Sbjct 170 GCTAAGAATCGCATAAA-CAATGTC-G-GA--GA-A-GA---TGTTGATATCGAAATCCC 219
Query 418 TGACACTGCTCATCAAATTAGCAGCGATTCATGGTTTCAGGTGGCGTTCGTTTTGACCAC 477
||||||||||||||| || ||| |||||||||||||||||| ||||||||| |||| ||
Sbjct 220 TGACACTGCTCATCAGATAAGCCGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAAC 279
Query 478 CGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTG 537
| ||||||||||||| || ||||||||||||||||||||| | |||||||||||||| ||
Sbjct 280 CAGTATAAACAGCGCATACGTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATG 339
Query 538 GATTGGTGGTGTGGTTGGTCTTCTTATTGCTACTGCAATCTCTCTTTATGCAAACACTCT 597
|| ||||||||||||||||||| || |||||||||||||||| || ||||||||||||||
Sbjct 340 GACTGGTGGTGTGGTTGGTCTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCT 399
Query 598 AATAGCTAAGCTTCATGAGTTTGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGG 657
|||| |||||||||||||||||||||| ||| |||||||||||||||||||| || ||
Sbjct 400 CGTAGCCAAGCTTCATGAGTTTGGTGGCAAAAGGCACATTCGCTATAGAGACCTCGCGGG 459
Query 658 ATTCATTTACGGTAGGAAGGCTTATCATCTTACATGGG-GATTGCAATATGTTAATCTTT 716
|||||||||||||| ||||||||| ||||||||||| | |||||||||| |||||||
Sbjct 460 GTTCATTTACGGTAGAAAGGCTTATTGTCTTACATGGGTG-CTGCAATATGTCAATCTTT 518
Query 717 TCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCCTTAAAGGCTGTTTATGTGC 776
||||||| || ||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 519 TCATGATAAACTGTGGATTCATCATACTAGCTGGTTCCGCTTTAAAGGCTGTTTATGTGG 578
Query 777 TTTTCAGGGATGATCATACCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTGATTT 836
|||| |||||||||||| ||||||| |||||||||||||||||||| | ||| ||||||
Sbjct 579 TTTTTAGGGATGATCATGCCATGAAGTTACCTCATTTTATAGCCATTTCGGGTCTGATTT 638
Query 837 GTGCGATTTTCGCTATTGGGATTCCTCATTTATCGGCTCTTGGGGTCTGGCTTG-GAGTT 895
||||| |||| || |||||||| ||||||||||| ||||||||| ||||||||| | |||
Sbjct 639 GTGCGGTTTTTGCGATTGGGATACCTCATTTATCTGCTCTTGGGATCTGGCTTGCG-GTT 697
Query 896 TCGACCTTCCTCAGTCTCATCTATATTGTTGTGGCAATCGTGCTATCGGTTAGAGATGGA 955
|||| | ||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||
Sbjct 698 TCGATCATCCTCAGCCTCATCTATATCGTTGTGGCAATCGTGTTATCGGTTAAAGATGGA 757
Query 956 GTAAAAACACCTTCAAGAGATTACGAGATACAAGGATCATCATTGAGCAAACTTTTTACC 1015
|| ||| |||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 758 GTTAAAGCACCTTCAAGAGATTATGAGATACAAGGATCATCTTTAAGCAAACTTTTTACC 817
Query 1016 ATCACAGGAGCAGCCGCAA-ATCTGGTTTTCGCATTCAACACCGGGATGCTTCCAGAAAT 1074
||||| ||||||||||||| | || ||||||| ||||||||| || ||||||||||||||
Sbjct 818 ATCACTGGAGCAGCCGCAACA-CTAGTTTTCGTATTCAACACAGGAATGCTTCCAGAAAT 876
Query 1075 TCAGGCAACAGTGAGGCAACCAGTTGTTAAAAACATGATGAAGGCTCTATACTTTCAATT 1134
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 877 TCAGGCAACAGTAAGGCAACCGGTTGTAAAAAACATGATGAAGGCTCTATACTTTCAATT 936
Query 1135 CACAGCGGGTGTTTTACCGATGTACGCAGTTACATTCATCGGATATTGGGCTTATGGATC 1194
||| | ||||||||||||||||||||| ||| ||||||||||||||||||||| |||||
Sbjct 937 CACGGTGGGTGTTTTACCGATGTACGCGGTTGTATTCATCGGATATTGGGCTTACGGATC 996
Query 1195 CTCAACCTCGACCTATCTACTAAACAGTGTTAATGGCCCACTCTGGGTCAAAGCCCTTGC 1254
|||||||||| | ||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 997 CTCAACCTCGGCTTATCTACTAAACAACGTTAATGGCCCAGTTTGGGTCAAAGCCCTTGC 1056
Query 1255 TAACGTCTCTGCTATCCTTCAATCTGTTATCTCTTTGCACATATTTGCGAGTCCAACATA 1314
|||| |||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1057 TAACATCTCCGCTATCCTTCAATCCGTTATCTCTTTGCACATTTTTGCAAGTCCAACATA 1116
Query 1315 TGAGTACATGGACACAAAGTATGGGATCAAAGGAAACCCATTTGCGATAAAGAACCTGCT 1374
|||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||| || |
Sbjct 1117 TGAGTATATGGACACAAAGTTTGGGATCAAAGGAAACCCATTGGCGTTAAAGAACTTGTT 1176
Query 1375 GTTTAGGATCATGGCGAGAGGCGGGTACATAGCGGTAAGCACGCTTATCTCAGCGCTGTT 1434
||||||||||||||| |||||||||||||||||||| || |||||| | ||||| || ||
Sbjct 1177 GTTTAGGATCATGGCAAGAGGCGGGTACATAGCGGTTAGTACGCTTCTATCAGCACTCTT 1236
Query 1435 GCCGTTCCTCGGTGACTTCATGAGCCTAACTGGTGCAGTGAGCACATTCCCTCTCACATT 1494
|| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1237 ACCATTCCTTGGGGACTTCATGAGCCTCACTGGTGCAGTGAGCACATTCCCTCTCACATT 1296
Query 1495 CATTCTAGCCAACCACATGTACTATAAGGCAAAGAACAATAAGCTGAATGCTATGCAAAA 1554
|||||||||||||||||||||||||||||| |||||||||||||| ||| || |||||||
Sbjct 1297 CATTCTAGCCAACCACATGTACTATAAGGCTAAGAACAATAAGCTCAATCCTTTGCAAAA 1356
Query 1555 GCTATGGCATTGGCTTAACGTTGTCTTCTTTAGTTTGATGTCTGTTGCTGCAGCCATTGC 1614
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1357 GCTATGGCATTGGCTCAACGTTGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGC 1416
Query 1615 AGCTGTCAGACTCATCGCCGTTGATTCCAAAAATTTCCATGTTTTTGCAGATTTGTAATT 1674
|||| | || ||||||||| |||| ||||| || ||||| ||||||||||||||||||||
Sbjct 1417 AGCTCTTAGGCTCATCGCCCTTGACTCCAAGAACTTCCACGTTTTTGCAGATTTGTAATT 1476
> Ahg486008 jgi|Araly1|486008|fgenesh2_kg.5__2000__AT3G55740.1
Length=1622
Score = 1186 bits (642), Expect = 0.0
Identities = 1076/1284 (84%), Gaps = 35/1284 (3%)
Strand=Plus/Plus
Query 401 GTT-GATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCGATTCATGGTTTCAGGT 459
||| ||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 312 GTTCGATCTCGAAGTCCCTGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGT 371
Query 460 GGCGTTCGTTTTGACCACCGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAAT 519
|| || ||| | || |||||||||||||| || ||||||||||||||||| || ||| |
Sbjct 372 AGCATTTGTTCTAACAACCGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGT 431
Query 520 TATGGTTCCTTTAGGTTGGATTGGTGGTGTGGTTGGTCTTC-TTATTGCTACTGCAATCT 578
||||||||||| |||||||| |||||||||||||||| || || ||||||| || ||||
Sbjct 432 CATGGTTCCTTTGGGTTGGATAGGTGGTGTGGTTGGTC-TCATTCTTGCTACCGCGATCT 490
Query 579 CTCTTTATGCAAACACTCTAATAGCTAAGCTTCATGAGTTTGGTGGCAGAAGACACATTC 638
| ||||| ||||||||||| || || |||||||||||||||||||||| |||||||||||
Sbjct 491 CCCTTTACGCAAACACTCTTATCGCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTC 550
Query 639 GCTATAGAGACCTTGCTGGATTCATTTACGGTAGGAAGGCT-TATCATCTTACATGGGGA 697
| |||||||| || || || ||||| || |||| || | | |||| | |||||||||||
Sbjct 551 GTTATAGAGATCTGGCAGGCTTCATCTATGGTA-AAAAGATGTATCGTGTTACATGGGGA 609
Query 698 TTGCAATATGTTAATCTTTTCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCC 757
|| |||||||| ||||||||||||||||||||||| ||||| || || ||||||||||||
Sbjct 610 TTACAATATGTCAATCTTTTCATGATTAATTGTGGCTTCATCATACTTGCTGGTTCCGCC 669
Query 758 TTAAAGGCTGTTTATGTGCTTTTCAGGGATGATCA-TAC-CATGAAACTACCTCATTTTA 815
||||||||||||||||| ||||| || ||||| || | | ||||||||| ||||| ||||
Sbjct 670 TTAAAGGCTGTTTATGTTCTTTTTAGAGATGA-CAGT-CTCATGAAACTGCCTCACTTTA 727
Query 816 TAGCCATTGCTGGT-TTGATTTGTGCGATTTTCGCTATTGGGATTCCTCATTTATCGGCT 874
| ||||| || ||| ||| | ||||| |||||||| || || |||||||||||||| |||
Sbjct 728 TCGCCATCGCGGGTGTTG-TATGTGCAATTTTCGCAATCGGTATTCCTCATTTATCAGCT 786
Query 875 CTTGGGGTCTGGCTTGGAGTTTCGACCTTCCTCAGTC-TCATCTATATTGTTGTGGCAAT 933
||||| ||||||| |||||||| || ||||||| | | ||||| |||||||| |||||
Sbjct 787 CTTGGAATCTGGCTAGGAGTTTCAACAATCCTCAG-CATAATCTACATTGTTGTTGCAAT 845
Query 934 CGTGCTATCGGTTAGAGATGGAGTAAA-AACACCTTCAAGAGATTACGAGATACAAGGAT 992
|| ||||| | || |||||||||||| || ||| |||||||||| | ||||||||||
Sbjct 846 AGTTCTATCAGCTAAAGATGGAGTAAACAAG-CCTGAAAGAGATTACAACATACAAGGAT 904
Query 993 CATCATTGAGCAAACTTTTTACCATCACAGGAGCAGCCGCAAATCTGGTTTTCGCATTCA 1052
||||| | | |||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 905 CATCAATAAACAAACTCTTTACCATAACAGGAGCAGCTGCAAATCTGGTTTTCGCATTCA 964
Query 1053 ACACCGGGA-TGCTTCCAGAAATTCAGGCAACAGTGAGGCAACCAGTTGTTAAAAACATG 1111
|||| |||| |||| || ||||| ||||||||||||| |||||| || ||||||||||||
Sbjct 965 ACAC-GGGAATGCTCCCGGAAATACAGGCAACAGTGAAGCAACCGGTGGTTAAAAACATG 1023
Query 1112 ATGAAGGCTCTATACTTTCAATTCACAGCGGGTGTTTTACCGATGTACGCAGTTACATTC 1171
||||||||||| || ||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 1024 ATGAAGGCTCTGTATTTTCAATTCACTGTTGGTGTTTTACCGATGTACGCGGTTACATTC 1083
Query 1172 ATCGGATATTGGGCTTATGGATCCTCAACCTCGACCTATCTACTAAACAGTGTTAATGGC 1231
||||| ||||||||||| || ||||| || ||||| ||||| ||||||| || | |||
Sbjct 1084 ATCGGTTATTGGGCTTACGGGTCCTCGACATCGACTTATCTGTTAAACAGCGTCAGTGGA 1143
Query 1232 CCACTCTGGGTCAAAGCCCTTGCTAACGTCTCTGCTATCCTTCAATCTGTTATCTCTTTG 1291
|| ||||||||||||||||| |||||| | || ||| | || |||||||||||||||||
Sbjct 1144 CCTCTCTGGGTCAAAGCCCTCGCTAACATTTCAGCTTTTCTCCAATCTGTTATCTCTTTA 1203
Query 1292 CACATATTTGCGAGTCCAACATATGAGTACATGGACACAAAGTATGG-GATCAAAGGAAA 1350
|| || ||||| ||||| || |||||||| ||||||||||||||||| | |||||||||
Sbjct 1204 CATATTTTTGCAAGTCCGACTTATGAGTATATGGACACAAAGTATGGAG-TCAAAGGAAG 1262
Query 1351 CCCATTTGCGATA-AAGAACCTGCTGTTTAGGATCA-TGGCGA-GAGGCGGGTACATAGC 1407
||||| || || ||||| ||| ||||||| | || | || | |||| | ||||| ||
Sbjct 1263 TCCATTAGC-ATTGAAGAATCTGTTGTTTAGAA-CAGTAGC-ACGAGGAAGCTACATCGC 1319
Query 1408 GGTAAGCACGCTTATCTCAGCGCTGTTGCCGTTCCTCGGTGACTTCATGAGCCTAACTGG 1467
||||||||| ||| |||| ||||| |||||||| ||||| || ||||||||||| || ||
Sbjct 1320 GGTAAGCACACTTCTCTCTGCGCTTTTGCCGTTTCTCGGAGATTTCATGAGCCTCACCGG 1379
Query 1468 TGC-AGTGAGCACATTCCCTCTCACATTCAT-TCTAGCCAACCACATGTA-CTATAAGGC 1524
|| | | ||||| ||||||||||||||||| | |||| || |||||||| || | ||
Sbjct 1380 AGCTA-TAAGCACGTTCCCTCTCACATTCATAT-TAGCGAATCACATGTATCT-TGTTGC 1436
Query 1525 AAAGAACAATAAGCTGAATGCTA-TGCAAAAGCTATGGCATTGGCTTAACGTT-GTCTTC 1582
| |||| ||||||| | | || ||||||||||||||||||||||||| ||| | | ||
Sbjct 1437 TATGAACGATAAGCTTAGT-CTTGTGCAAAAGCTATGGCATTGGCTTAATGTTTG-CGTC 1494
Query 1583 TTTAGTTTGATGTCTGTTGCTGCAGCCATTGCAGCTGTCAGACTCATCGCCGTTGATTCC 1642
||| | || |||||| ||||||| || ||||| ||||| ||||||||| | |||||||||
Sbjct 1495 TTTGGATTAATGTCTCTTGCTGCTGCTATTGCTGCTGTTAGACTCATCTCTGTTGATTCC 1554
Query 1643 AAAAATTTCCATGTTTTTGCAGAT 1666
|| || |||||||||||||| |||
Sbjct 1555 AAGAACTTCCATGTTTTTGCTGAT 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67610184875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5