BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39900.1
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483027 jgi|Araly1|483027|fgenesh2_kg.4__2087__AT2G39900.1 1336 0.0
Ahg938524 jgi|Araly1|938524|scaffold_502715.1 545 2e-154
> Ahg483027 jgi|Araly1|483027|fgenesh2_kg.4__2087__AT2G39900.1
Length=916
Score = 1336 bits (723), Expect = 0.0
Identities = 825/872 (95%), Gaps = 15/872 (2%)
Strand=Plus/Plus
Query 90 TCAGCTCCAATTTCAACCTGCATTTCTCTCTTCTCAATTTTGGGTTTCtttttttGATAT 149
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 59 TCAGCTCCAATTTCAACCTGCATTTCTCTCTTCTCAATTTTGGTTTTC-CTTTTTGATTT 117
Query 150 CTCATTTGATCAGATCGACGAAGAGAGGAAGAAGG-TTTGAGCTGAGAGATCTTTGGAGG 208
||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct 118 CTCATTTGATCAGATCGACGAAGAGAGAAAG-AGGTTTTGAGCTGAGAGATCTTTGGAGG 176
Query 209 TAGAAAGAAGATCTCAAAAACGATGTCGTTTACAGGAACTCAGCAGAAATGCAGGGCGTG 268
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 T----AGAAGATCTCCAAAACGATGTCGTTTACAGGAACTCAGCAGAAATGCAGGGCGTG 232
Query 269 CGAGAAGACAGTGTACCCTGTGGAGCTTCTCTCAGCTGATGGAATCTCTTATCACAAGGC 328
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 233 CGAGAAGACAGTGTACCCTGTGGAGCTTCTCTCAGCTGATGGAATCTCTTATCACAAGTC 292
Query 329 TTGCTTCAAATGCTCTCACTGCAAAAGCAGACTTCAACTGAGCAATTATTCATCAATGGA 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TTGCTTCAAATGCTCTCACTGCAAAAGCAGACTTCAACTGAGCAATTATTCATCAATGGA 352
Query 389 AGGAGTGGTGTATTGTAGGCCTCATTTTGAGCAGCTTTTCAAGGAGTCTGGTAGTTTCAG 448
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 353 AGGAGTGGTGTATTGTAGGCCTCATTTTGAGCAGCTCTTCAAGGAGTCTGGTAGTTTCAG 412
Query 449 CAAGAACTTTCAGTCACCTGCAAAGCCATTGACTGATAAGCCAACCCCGGAGCTGAATAG 508
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||
Sbjct 413 CAAGAACTTTCAGTCACCTGCAAAACCATTGACTGATAAGCCAACCCCTGAGCTGACTAG 472
Query 509 GACACCTAGTCGACTTGCTGGTATGTTCTCTGGAACGCAAGACAAATGCGCTACTTGCAC 568
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GACACCTAGTCGAGTTGCTGGTATGTTCTCTGGAACGCAAGACAAATGCGCTACTTGCAG 532
Query 569 TAAAACCGTGTATCCTATCGAAAAGGTAACTGTGGAAAGCCAGTGTTACCATAAATCTTG 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TAAAACCGTGTATCCTATCGAAAAGGTAACTGTGGAAAGCCAGTGTTACCATAAATCTTG 592
Query 629 CTTCAAGTGTTCTCATGGAGGCTGTCCGATATCTCCATCGAACTATGCAGCTCTAGAGGG 688
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 593 CTTCAAGTGTTCTCATGGAGGCTGTCCGATATCTCCATCGAACTATGCAGCTCTTGAAGG 652
Query 689 AATATTGTACTGCAAGCACCATTTCGCTCAGCTTTTCAAGGAGAAAGGAAGTTACAATCA 748
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AATTTTGTACTGCAAGCACCATTTCGCTCAGCTTTTCAAGGAGAAAGGAAGTTACAATCA 712
Query 749 TCTCATCAAATCTGCTTCCATCAAACGCGCTACTGCTGCTGCTACCGCAGCTGCTGCAGC 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TCTCATCAAATCTGCTTCCATCAAACGCGCTACTGCTGCTGCTACCGCAGCTGCTGCAGC 772
Query 809 TGTAGCAGCCGTTCCCGAATCTTGAATTCAAATTCTCTTTATTTTTGTGTATGTGCTGTG 868
||||||||||||||||||||||||| || ||| ||| ||| | | ||||| |||| ||||
Sbjct 773 TGTAGCAGCCGTTCCCGAATCTTGATTTTAAAATCTGTTTGTCTCTGTGTCTGTGATGTG 832
Query 869 TTGTTTACATGTATTCGATATGATTCATGTTCTTTGTCTTCCATAATTGAACCAGGCATA 928
|||||||| |||||||| | | |||||||||||||||||| | | | |||||||
Sbjct 833 TTGTTTACCTGTATTCGCT-TC-TTCATGTTCTTTGTCTTC--T--TCCAT--AGGCATA 884
Query 929 AAATTCTCCCAGTTTTCTCTGAGTTTCTTGTT 960
||||||||| |||||||| |||||||||||||
Sbjct 885 AAATTCTCCGAGTTTTCTTTGAGTTTCTTGTT 916
> Ahg938524 jgi|Araly1|938524|scaffold_502715.1
Length=641
Score = 545 bits (295), Expect = 2e-154
Identities = 477/565 (84%), Gaps = 11/565 (2%)
Strand=Plus/Plus
Query 230 GATGTCGTTTACAGGAACTCAGCAGAAATGCAGGGCGTGCGAGAAGACAGTGTACCCTGT 289
|||||| |||||||||||||| |||||||||| ||| || |||||||| || || ||||
Sbjct 20 GATGTCTTTTACAGGAACTCAACAGAAATGCAAGGCTTGTGAGAAGACTGTTTATGCTGT 79
Query 290 GGAGCTTCTCTCAGCTGATGG-AATCTCTTATCACAAGGCTTGCTTCAAATGCTCTCACT 348
|||||||||||||||||||| | | ||||||||| |||||||||||||| ||||||
Sbjct 80 TGAGCTTCTCTCAGCTGATGGTGTTGGC-TATCACAAGTCTTGCTTCAAATGCACTCACT 138
Query 349 GCAAAAGCAGACTTCAACTGAGCAATTATTCATCAATGGAAGGAGTGGTGTATTGTAGGC 408
|||||||||| ||||| ||||||| |||||||||||||||||| ||| |||| |||| ||
Sbjct 139 GCAAAAGCAGGCTTCAGCTGAGCAGTTATTCATCAATGGAAGGTGTGTTGTACTGTAAGC 198
Query 409 CTCATTTTGAGCAGCTTTTCAAGGAGTCTGGTAGTTTCAGCAAGAACTTTCAGTCACCTG 468
|||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 199 CTCATTTTGAGCAGCTCTTCAAGGAGAGTGGTAGTTTCAACAAGAACTTTCAGTCACCTG 258
Query 469 CAAAGCCATTGACTGATAAGCCAACCCCGGAGCTGA-ATAGGACACCTAGTCGACTTGCT 527
|||| || | |||| || |||| || ||||||| | ||||| ||||| ||| ||||
Sbjct 259 CAAAACC---GGCTGACAAATCAACTCCTGAGCTGACA-AGGACGCCTAGCCGAGTTGCC 314
Query 528 GGTATGTTCTCTGGAACGCAAGACAAATGCGCTACTTGCACTAAAACCGTGTATCCTATC 587
|| | ||||||||| || ||||| |||||||| ||||||| |||||| ||||||||||||
Sbjct 315 GGCAGGTTCTCTGGTACACAAGAGAAATGCGCCACTTGCAGTAAAACTGTGTATCCTATC 374
Query 588 GAAAAGGTAACTGTGGAAAGCCAGTGTTACCATAAATCTTGCTTCAAGTGTTCTCATGGA 647
||||||||||| || || |||||| || || || || ||||||||||| || ||||||
Sbjct 375 GAAAAGGTAACAGTAGAGAGCCAGACATATCACAAGTCCTGCTTCAAGTGCTCACATGGA 434
Query 648 GGCTGTCCGATATCTCCATCGAACTATGCAGCTCTAGAGGGAATATTGTACTGCAAGCAC 707
||||| ||||| || || || ||||| |||||||| || ||||| ||||||||||||||
Sbjct 435 GGCTGCCCGATTTCGCCTTCCAACTACGCAGCTCTTGAAGGAATCCTGTACTGCAAGCAC 494
Query 708 CATTTCGCTCAGCTTTTCAAGGAGAAAGG-AAGTTACAATCATCTC-ATCAAATCTGCTT 765
|||||||||||||| |||||||| ||||| ||| ||||| || || |||||||| ||||
Sbjct 495 CATTTCGCTCAGCTCTTCAAGGA-AAAGGGAAGCTACAACCA-CTTGATCAAATCCGCTT 552
Query 766 CCATCAAACGCGCTACTGCTGCTGC 790
||||||||||| || | || |||||
Sbjct 553 CCATCAAACGCTCTGCAGCCGCTGC 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37284212826
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5