BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39910.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483028 jgi|Araly1|483028|fgenesh2_kg.4__2088__AT2G39910.1 2278 0.0
> Ahg483028 jgi|Araly1|483028|fgenesh2_kg.4__2088__AT2G39910.1
Length=1446
Score = 2278 bits (1233), Expect = 0.0
Identities = 1320/1363 (97%), Gaps = 2/1363 (0%)
Strand=Plus/Plus
Query 1 GTAAAGATAT-GAACTTTACAAAAGAAAATTGTCAATTTCGAAAAATGTTGAGCACAAGC 59
|||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GTAAAGAT-TCGAACTTAACAAAAGAAAATTGTCAATTTCGAAAAATGTTGAGCACAAAC 59
Query 60 TCTGATCTTCATGGCCGTCTTCTCCGATTATCAGAACCAATAGCAGAGATTCTTAGACGT 119
||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTGACCTCCATGGTCGTCTTCTCCGATTATCAGAACCAATAGCAGAGATTCTTAGACGC 119
Query 120 ACACAGTACACACCGCAAGAGAGCAGCAAAGTATCCACCAAAGATATACTCTTGTCCTTG 179
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 120 ACACAGTACACACCGCAAGAAAGCAGCAAAGTATCCACTAAAGATATACTCTTTTCCTTG 179
Query 180 TTACCAAACACTTCGTCTTCTCGTCTCGCCAATGAAGAATCGATCAAAAGTCTCGCGCTT 239
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 180 TTACCAAACACTTCGTCTTCTCGCCTTACCAATGAAGAATCGATCAAAAGTCTCGCGCTT 239
Query 240 GCTTGTGCCCTTCTCGCTTCTTCACGTTCATCCACTCACGAACTTCTCTCATGGATTCCA 299
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 240 GCTTGTGCCCTTCTCGCTTCTTCACGTTCCTCCACTCACGAACTCCTCTCATGGATTCCA 299
Query 300 GAAAACCTCTCTGTCATGGGGGAATCTACATTTTGGGAGATTTCAAGGGATTGTTTCAGT 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAAAACCTCTCTGTTATGGGGGAATCTACATTTTGGGAGATTTCAAGGGATTGTTTCAGT 359
Query 360 GATTTTTCTAGCAACAGTAATGCTGAGAAGCTTGTGGAATTGGTAGAGGATAGTGAGAAG 419
|||||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||
Sbjct 360 GATTTTTCCAGCAACAGTACTGCTGAGAAGCTCGTGGAATTGGTGGAGGATAGTGAGAAG 419
Query 420 ATCGAAATGTTGCCGATAGTTTTGCCGGAGTTAAAAGATGGAATCGAAAAGAGTTCACTT 479
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATGGAAATGTTACCGATTGTTTTGCCGGAGTTAAAAGATGGAATCGAAAAGAGTTCACTT 479
Query 480 GGTAAAGGCAGTGATGCAGAGGATGTTTCAGCTGCAATGGCTAGAACACCTGTTGGTTAT 539
|||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 480 GGTAAAGGCAGTGATGAAGAGGATGTTTCAGCTGCAATGGCGAGAACTCCTGTTGGTTAT 539
Query 540 GCTATACTTGCTGCTCACCAGCTCAGGTGGTTTGTTACTCAGGTTAAAAAACCGAATTTG 599
|| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 540 GCGATACTTGCTGCTCACCAGCTCAGGTGGTTTGTTACTCAGGTTGAGAAACCGAATTTG 599
Query 600 GTGAAATTTTGTAACTTGGTGGTTCCTTGTGCTTTGACAGCACTTGATCATTGGTCTCCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTGAAATTTTGTAACTTGGTGGTTCCTTGTGCTTTGACAGCACTTGATCATTGGTCTCCT 659
Query 660 GAAGTCAAAGGGCAGGGTATGATAACCTTTGTTCATCTTGCTAAAAATGTGAGTTCCGGT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 660 GAAGTCAAAGGGCAGGGTATGATAACCTTTGTTCATCTTGCTAAAAATGTGAGTTCGGGT 719
Query 720 GATCTTGGTTTGTATGGAGATGTGGTTCTTGATGCGTGTTGCCAGAATATAGCTTCCGAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GATCTTGGTTTGTATGGAGATGTGGTTCTTGATGCGTGTTGCCAGAATATAGCTTCCGAT 779
Query 780 GATGAGATTTGGATACATGTGGTAGAGTTATCTGTGCTTCTTGTTACTAAAATCCACCCA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GATGAGATTTGGATACATGTGGTAGAGTTATCTGTGCTTCTTGTTACTAAAATCCACCCA 839
Query 840 AATAATCCTCGAAGCCCGTGGTATGAGAAGATCATGAATGAGATGCTCGGGCATTTGGAA 899
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 AATAATCCCCGAAGCCCGTGGTATGAGAAGATCATGAATGAGATGCTTGGGCATTTGGAA 899
Query 900 CGCCAACCAAGAAATAAGGAGCGACGTATCACTTGGCTAAGATTTGTTGAGCCACTCTTG 959
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 900 CGCCAACCAAGAAATAAGGAGCGACGTATCACTTGGCTAAGATTCGTTGAGCCACTCTTG 959
Query 960 AACTCTCTAGGGCTTTTCTTACTTGCTCATTTTCGACGTATCTTCCCTCTTTTCTTTCAG 1019
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AACTCTCTAGGTCTTTTCTTACTTGCTCATTTTCGACGTATCTTCCCTCTTTTCTTTCAG 1019
Query 1020 TGGATGCATTCAGACGACGCCGAAACAGTTCTGTTGGTTCTTGAGAGACTGGAGACAGTT 1079
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct 1020 TGGATGCATTCAGACGACGCCGAAACCGTTTTGTTGGTTCTTGAGAGACTGGAGACGGTT 1079
Query 1080 GTGAGGTTGACGTGGATTAGACACTCACCTGTGTTCCCAAGATTGGTGGATGAGCTTGTT 1139
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 GTGAGGTTGACGTGGATTAGAAACTCACCTGTGATCCCAAGATTGGTGGATGAGCTTGTT 1139
Query 1140 TCCTTGTACAAAGAGTCATCGATGCGTAAGGATCGCGATGATATTAGACCTCTTATCCTC 1199
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 TCCTTGTACAAAGAGTCATCGATGCGTAAGAATCGCGATGATATTAGACCTCTTATCCTC 1199
Query 1200 CGTATCTTGATGCTACTCCGCCAGTGCAAAGGTCTACGGTTTGAGTCAGCGTGGAGTCAA 1259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1200 CGTATCTTGATGCTACTCCGCCAGTGCAAAGGTCTACAGTTTGAGTCAGCGTGGAGTCAA 1259
Query 1260 TACCAGGAGGATCCAAATCTGAGTACTGTTAGTCAACATATATGGACTAGTTCAAGTTGA 1319
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1260 TACCAGGAGGATCCAAATCTGAGTACTGTCAGTCAACATATATGGACTAGTTCAAGTTGA 1319
Query 1320 TCTCAAGAGCGTATGTTTGACTAAAACAGCCAtttttttttCT 1362
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TCTCAAGAGCGTATGTTTGACTAAAACAGCCATTTTTTTTTCT 1362
Score = 139 bits (75), Expect = 5e-32
Identities = 81/84 (96%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 1394 TGATGCAAGTAATTACTGGCGAATCCTCGAATTTTTGTAAGCATTTGGCTCTTGACTCTT 1453
||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1363 TGATGCAAGTAATCACTGGCTAATCCTCGAATTTTTGTAAGAATTTGGCTCTTGACTCTT 1422
Query 1454 CTTAAGCTAATCTGATTTGATACA 1477
||||||||||||||||||||||||
Sbjct 1423 CTTAAGCTAATCTGATTTGATACA 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5