BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39920.1
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483029 jgi|Araly1|483029|fgenesh2_kg.4__2089__AT2G39920.1 1544 0.0
Ahg483028 jgi|Araly1|483028|fgenesh2_kg.4__2088__AT2G39910.1 52.8 5e-06
> Ahg483029 jgi|Araly1|483029|fgenesh2_kg.4__2089__AT2G39920.1
Length=961
Score = 1544 bits (836), Expect = 0.0
Identities = 923/965 (96%), Gaps = 6/965 (1%)
Strand=Plus/Plus
Query 202 TTGGGGAGTCGGTATTCGATAGAATCTGGATGTTACATGACATCTTTAGCAGCTTCCATC 261
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGGGGAGTCGATATTCGATGGAATCTGGATGTTACATGACATCTTTAGCAGCTTCCATC 60
Query 262 TTCATAGCTTCTCTAGTAACATTTGGAGTTTTGATGATAACACTTCTTATTGCTTTATCA 321
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTCATAGCGTCTCTAGTAACATTTGGAGTTTTGATGATAACACTTCTTATAGCTTTATCA 120
Query 322 ACCATGTTACAAAGCTGTGAGAACCGGAATATTGCAATCGTCGAGGCTCAAAGACTCGAT 381
||||||||||||| |||||| ||||||||||||| ||| ||||||||||||||||| |||
Sbjct 121 ACCATGTTACAAACCTGTGAAAACCGGAATATTGGAATAGTCGAGGCTCAAAGACTTGAT 180
Query 382 GAGAGTTTCGGTTACTGTAAAATCTTGTCTTTACACTCTCAGCTCAATAGCTT-GGATGA 440
|| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||
Sbjct 181 GAAAGTTTCGGTTACTGTAAAATCTTGTCTATACACTCGCAGCTCAATAGCTTGGGA-GA 239
Query 441 AGAAAGTGAATTACCACTGTTATGTAGAGATGTTGCTTTACACAGAATCAAACAAGGAAT 500
||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 AGAAAGTGAGTTACCATTGTTATGTAGAGATGTTGCTTTACGCAGAATCAAACAAGGAAT 299
Query 501 TTACTTGAGAGAGTTAAACTTCACTATTCAAATGGCTCTCACTTATTTCCAAACCATCAA 560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 300 TTACTTGAGAGAGTTAAACTTCACTATTCAAATGGCTCTCACTTATTTTCAAACCGTCAA 359
Query 561 ACCGATGAATGATAAC-TGCGATGTTGTTGTGATCGATATTGATGACACCAATCTATTAG 619
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 ACCGATGAATGATAACCT-CGATGTTGTTGTGATCGATATTGATGACACCAATCTATTTG 418
Query 620 AACAAGATAGTTACTACATGAAGTATATTGAAGAAGCAAAGCATCAGAAAAGCATACTAA 679
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AACAAGATAGTTATTACATGAAGTATATTGAAGAAGCAAAGCATCAGAAAAGCATACTAA 478
Query 680 TACTTGCACTATATTCTAAGCTTAGATCACAAGGCTATTCAATGGTTCTATTATCAAGAA 739
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 479 CACTTGAACTATATTCTAAGCTAAGATCACAAGGCTATTCAATGGTTCTGTTATCAAGAA 538
Query 740 GACCCGAAACAGAGCGGAACGCCACAATCGAGCAGTTAAAATCTAGAGGATACAGCGACT 799
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 539 GACCCGAAACAGAGCGGAACGCCACAATCGAGCAGTTAAAATCTAGTGGATACAGCGATT 598
Query 800 GGTCACATTTGATTATGAGCAGGGAAGATACAAGACAAAAGGAAGAGTTAGAAAGAGGTC 859
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGTCACATTTGATCATGAGCAGGGAAGATACAAGACAAAAGGAAGAGTTAGAAAGAGGTC 658
Query 860 ACCGCGTAATTGGAGTCATTGGTAATCATATGGATGTGTTAAGAGGCCAGTGGAATTGGC 919
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 659 ACCGCGTAATTGGATTCATTGGTAATCATATGGATGTGTTAAGAAGCCAGTGGAATTGGC 718
Query 920 AAAGCAAGCGTCTGTTCAAACTTCCAAGCCTTACCTATGATGATGTTTTGGATTACAATG 979
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 719 AAAGCAAGCGTCTGTTCAAACTTCCAAGCCTTGCCTATGATGATGTTTTGGATTACAGTG 778
Query 980 AAAGATGAGATCATGAAGTTTGATGTGTATAGGTTTTCAAGAGTTTTCTGTAAAATATAG 1039
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 779 AAAGATGAAATCATGAAGTTTGATGTGTATAGGTTTTCAAGAGTTTTCTGTAA--TATAG 836
Query 1040 TTTTATATGTTCCAAAGATAAAGTAGAGACATTTTGTAATAGTTCAATGTCTCATGTTGT 1099
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 837 TTTTATATGTTCCAAAGATAAAGTAGAGACATATTGTAATTCTTCAATGTCTCATGTTGT 896
Query 1100 CACTATCACATCACACAGTGGGTGGTCATGTATCCAAGAGTATGTGTATCAAATCAGATT 1159
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 897 CACTATCACATCACAAAGTGGGTGGTCATGTATCCAAGAGTATATGTATCAAATCAGATT 956
Query 1160 AGCTT 1164
|||||
Sbjct 957 AGCTT 961
> Ahg483028 jgi|Araly1|483028|fgenesh2_kg.4__2088__AT2G39910.1
Length=1446
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 1144 TGTATCAAATCAGATTAGCTTAAGAAGA 1171
||||||||||||||||||||||||||||
Sbjct 1446 TGTATCAAATCAGATTAGCTTAAGAAGA 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43688862882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5