BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39940.1
Length=2396
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483031 jgi|Araly1|483031|fgenesh2_kg.4__2091__AT2G39940.1 3083 0.0
> Ahg483031 jgi|Araly1|483031|fgenesh2_kg.4__2091__AT2G39940.1
Length=2191
Score = 3083 bits (1669), Expect = 0.0
Identities = 1992/2138 (93%), Gaps = 61/2138 (3%)
Strand=Plus/Plus
Query 140 ctcACTCTGGTGGTTATGTGTGGATCTGCGACCTCGATTTCAATTCGAAGTCGTCGGTTT 199
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCACTCTCGTGTTTATGTGTGGATCTGCGACCTCGATTTCAATTCGAAGTCGTCGGTTT 120
Query 200 CTTCTCTAAATCGAATCTTTCCAGGATTCGtttgtttttttcttttgtttttttttCGAT 259
|||| |||||||||| | | || || |||||||| || ||||||
Sbjct 121 CTTCACTAAATCGAA----T-C-----TC--TT-TTTTTTTC---------TTCTTCGAT 158
Query 260 CCGATGGAGGATCCTGATATCAAGAGGTGTAAATTGAGCTGCGTCGCGACGGTTGATGAT 319
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 159 CCGATGGAGGATCCTGATATCAAGAGGTGTAGATTGAGCTGCGTCGCGACGGTTGATGAC 218
Query 320 GTCATCGAGCAAGTCATGACCTATATAACTGACCCGAAAGATCGCGATTCGGCTTCTTTG 379
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 219 GTCATCGAGCAAGTCATGACGTATATAACCGACCCCAAAGATCGCGATTCGGCGTCTTTG 278
Query 380 GTGTGTCGGAGATGGTTCAAGATTGATTCCGAGACGAGAGAGCATGTGACTATGGCGCTT 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GTGTGTCGGAGATGGTTCAAGATTGATTCCGAGACGAGAGAGCATGTGACTATGGCGCTT 338
Query 440 TGCTACACTGCGACGCCTGATCGTCTTAGCCGTCGATTCCCGAACTTGAGGTCGCTCAAG 499
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 339 TGCTACACTGCGACGCCTGATCGTCTTAGCCGTCGATTTCCGAACTTGAGGTCGCTCAAG 398
Query 500 CTTAAAGGCAAGCCTAGAGCAGCTATGTTTAATCTGATCCCTGAGAACTGGGGAGGTTAT 559
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 399 CTTAAAGGCAAGCCTAGAGCAGCTATGTTTAATCTCATCCCGGAGAACTGGGGAGGATAT 458
Query 560 GTTACTCCTTGGGTTACTGAGATTTCTAACAAC-CTTAGGCAGCTCAAATCGGTGCACTT 618
||||||||||||||||||||||||||||| | | |||| ||||||||||||||| |||||
Sbjct 459 GTTACTCCTTGGGTTACTGAGATTTCTAA-ATCGCTTAAGCAGCTCAAATCGGTTCACTT 517
Query 619 CCGACGGATGATTGTCAGTGACTTAGATCTAGATCGTTTAGCTAAAGCTAGAGCAGATGA 678
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 518 CCGACGGATGATTGTCAGTGACTTAGATCTGGATCGTTTAGCTAAAGCCAGAGCAGATGA 577
Query 679 TCTTGA-GACTTTGAAGCTAGACAAGTGTTCTGGTTTTACTACTGATGGACTTTTGAGCA 737
|||||| | |||||||||| || ||||| |||||||| ||||||||||||||||||||||
Sbjct 578 TCTTGAAG-CTTTGAAGCTCGATAAGTGCTCTGGTTTCACTACTGATGGACTTTTGAGCA 636
Query 738 TCGTTACACACTGCAGGAAAATAAAAACTTTGTTAATGGAAGAGAGTTCTTTTAGTGAAA 797
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 637 TCGTTACACACTGCAGGAAAATAAAAACGTTGTTAATGGAAGAGAGTTCTTTTATTGAAA 696
Query 798 AGGATGGTAAGTGGCTTCATGAGCTTGCTCAGCACAACACATCTCTTGAGGTTTTAAACT 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 AGGATGGTAAGTGGCTTCATGAGCTTGCTCAGCACAACACATCTCTTGAGGTTTTAAACT 756
Query 858 TCTACATGACGGAGTTTGCCAAAATCAGTC-CCAAAGACTTGGAAACCATAGCTAGAAAT 916
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 757 TCTACATGACGGAGTTTGCCAAAATCAG-CGCCAAAGACTTGGAAACCATAGCTAGAAAT 815
Query 917 TGCCGCTCTCTGGTATCTGTGAAGGTCGGTGACTTTGAGATTTTGGAACTAGTTGGGTTC 976
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 TGCCGCTCTCTGGTTTCTGTGAAGGTCGGTGACTTTGAGATTTTGGAACTAGTTGGGTTC 875
Query 977 TTTAAGGCTGCAGCTAATCTTGAAGAATTTTGTGGTGGCTCCTTGAATGAGGATATTGGA 1036
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 876 TTTAAGGCCGCAGCTAATCTTGAAGAATTTTGTGGTGGCTCCCTGAATGAGGATATTGGA 935
Query 1037 ATGCCTGAGAAGTACATGAATCTGGTTTTTCCCCGAAAACTATGTCGGCTTGGTCTCTCT 1096
||||||||||||||||||||||||||||| |||||||| ||||| || || || ||||||
Sbjct 936 ATGCCTGAGAAGTACATGAATCTGGTTTTCCCCCGAAAGCTATGCCGTCTAGGCCTCTCT 995
Query 1097 TACATGGGACCTAATGAAATGCCAATACTATTTCCATTCGCGGCCCAAATCCGAAAGCTG 1156
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 996 TATATGGGACCTAATGAAATGCCAATACTATTTCCATTCGCGGCCCAGATCCGAAAGCTG 1055
Query 1157 GATTTGCTTTATGCATTGCTAGAAACTGAAGACCATTGTACGCTTATCCAAAAGTGTCCT 1216
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1056 GATTTGCTTTATGCATTGCTAGAAACTGAAGACCATTGTACGCTAATCCAAAAGTGTCCT 1115
Query 1217 AATTTGGAAGTTCTCGAGACAAGGAATGTAATCGGAGATAGGGGTCTAGAGGTCCTTGCA 1276
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1116 AATTTGGAAGTTCTCGAGACAAGGAATGTAATTGGAGATAGGGGTCTAGAGGTTCTTGCA 1175
Query 1277 CAGTACTGTAAGCAGTTGAAGCGGCTGAGGATTGAACGCGGTGCAGATGAACAAGGAATG 1336
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1176 CAGTACTGTAAGCAGTTGAAGCGGCTGAGGATTGAACGGGGTGCAGATGAACAAGGAATG 1235
Query 1337 GAGGACGAAGAAGGCTTAGTCTCACAAAGAGGATTAATCGCTTTGGCTCAGGGCTGCCAG 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 GAGGACGAAGAAGGCTTAGTCTCACAAAGAGGATTAATCGCTTTGGCTCAGGGCTGCCAG 1295
Query 1397 GAGCTAGAATACATGGCGGTGTATGTCTCAGATATAACTAACGAATCTCTTGAAAGCATA 1456
||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1296 CAGCTAGAATACATGGCGGTGTATGTCTCAGACATTACGAACGAATCTCTTGAAAGCATA 1355
Query 1457 GGCACATATCTGAAAAACCTCTGTGACTTCCGCCTTGTCTTACTCGACCGGGAAGAAAGG 1516
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 GGCATATATCTGAAAAACCTCTGTGACTTCCGCCTTGTCTTACTCGACCGGGAAGAAAGG 1415
Query 1517 ATTACAGATCTGCCACTGGACAACGGAGTCCGATCTCTTTTGATTGGATGCAAGAAACTC 1576
||||||||| | ||| ||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 1416 ATTACAGATTTACCATTGGACAACGGAGTGCGATCCCTCTTGATTGGATGCAAGAAACTC 1475
Query 1577 AGACGATTTGCATTCTATCTGAGACAAGGCGGCTTAACCGACTTGGGCTTAAGCTACATC 1636
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1476 AGACGGTTTGCTTTCTATCTCAGACAAGGCGGCTTAACCGACTTGGGCTTAAGCTACATC 1535
Query 1637 GGACAGTACAGTCCAAACGTGAGATGGATGCTGCTGGGTTACGTAGGTGAATCAGATGAA 1696
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1536 GGACAATACAGTCCAAATGTGAGATGGATGCTGCTGGGTTACGTAGGTGAATCGGATGAA 1595
Query 1697 GGTTTAATGGAATTCTCAAGAGGCTGTCCAAATCTACAGAAGCTAGAGATGAGAGGTTGT 1756
||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1596 GGTTTAATGGAATTCTCGAGAGGTTGTCCGAATCTACAGAAGCTAGAGATGAGAGGCTGT 1655
Query 1757 TGCTTCAGTGAGCGAGCAATCGCTGCAGCGGTTACAAAATTGCCTTCACTGAGATACTTG 1816
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1656 TGCTTCAGCGAGCGAGCAATCGCTGCAGCAGTTACAAAATTGCCTTCACTGAGATATTTG 1715
Query 1817 TGGGTACAAGGTTACAGAGCATCGATGACGGGACAAGATCTAATGCAGATGGCTAGACCG 1876
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1716 TGGGTACAAGGTTACAGAGCATCAATGACGGGACAAGATCTAATGCAGATGGCTAGACCG 1775
Query 1877 TACTGGAACATCGAGCTGATTCCATCAAGAAGAGTCCCGGAAGTGAATCAACAAGGAGAG 1936
|||||||||||||||||||| ||||| |||| ||| |||||||||||||| | |||||||
Sbjct 1776 TACTGGAACATCGAGCTGATACCATCGAGAAAAGTACCGGAAGTGAATCAGCTAGGAGAG 1835
Query 1937 ATAAGAGAGATGGAGCATCCGGCTCATATATTGGCTTACTACTCTCTGGCTGGCCAGAGA 1996
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1836 ATAAGAGAGATGGAGCATCCGGCTCATATATTGGCTTACTACTCTCTGGCTGGTCAGAGA 1895
Query 1997 ACAGATTGTCCAACAACTGTTAGAGTCCTGAAGGAGCCAATATGATATG-ACCCAAAAAA 2055
||||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||
Sbjct 1896 ACAGATTGTCCAACAACTGTTAGAGTCCTGAGGGAGCCAATATGAT-TGGACC-AAAAAA 1953
Query 2056 CAGGTTTGTATATAAAGATTTTTAGTCTCGAGTTTTGGGGTTTCCACAAACTGTGTACTA 2115
||||||||||||||||||||| |||| ||||||||||||||||| || || ||
Sbjct 1954 CAGGTTTGTATATAAAGATTTGTAGTGTCGAGTTTTGGGGTTTCTT-----TG-GTTCT- 2006
Query 2116 TACTACTTTGGTTCtttttttGTTTCATGTTGTGTCGTC-GATGTTTTTGGGAGATTACA 2174
| || ||| || | |||||||||| ||||| ||||||||||||||||||||
Sbjct 2007 T--TA-TTT--TT--------GATTCATGTTGTATCGTCAGATGTTTTTGGGAGATTACA 2053
Query 2175 TAGAGTCAGTCTTGTTTGTTGTATGGTCATTACTTCTTTATTTTTCCTCAGGGGTCTGTT 2234
||||||| | | |||||| |||||||| |||||||||||||||| |||||||||||
Sbjct 2054 TAGAGTC--T-T-GTTTGT---ATGGTCATCACTTCTTTATTTTTCCACAGGGGTCTGTC 2106
Query 2235 TACT-TTAATTTCTTTAATAAAACCCCGAAGATTTTGA 2271
|||| || |||||||||||||||||| ||||||||||
Sbjct 2107 TACTCTTC-TTTCTTTAATAAAACCCCAAAGATTTTGA 2143
Score = 80.5 bits (43), Expect = 5e-14
Identities = 51/54 (94%), Gaps = 3/54 (6%)
Strand=Plus/Plus
Query 2339 TTT-ATTTGTGGTTGTGATTGTTTTGATAACATTAGTAAAA-AGGCAAATAATA 2390
||| ||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2139 TTTGATTTGTGGTTGTGATTGTTTTGATAACATTAGTAAAATAG-CAAATAATA 2191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90273880650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5