BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39950.1
Length=2412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483032 jgi|Araly1|483032|fgenesh2_kg.4__2092__AT2G39950.1 3323 0.0
> Ahg483032 jgi|Araly1|483032|fgenesh2_kg.4__2092__AT2G39950.1
Length=2302
Score = 3323 bits (1799), Expect = 0.0
Identities = 2072/2199 (94%), Gaps = 38/2199 (2%)
Strand=Plus/Plus
Query 230 caatttctggatcgagtttttggtttCTCTGACAAGTTACCGATACGATATTTGATATGG 289
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 126 CAATTTCTGGATCGAG-TTTTGGTTTCTCTGACAAGTTACCGATCCGATATTTGATATGG 184
Query 290 CCGATTCTAGGAAGCGAGATACCGGAGACGATCATCAGCACCGTGATGATCAACCAAATG 349
||||||||||||| |||||||||||||||| || |||||||||||||| |||||||
Sbjct 185 CCGATTCTAGGAAACGAGATACCGGAGACG---AT---CACCGTGATGATCAGCCAAATG 238
Query 350 ACGGTGATGATTTGTCTATTTCGTCGTCGACGACTGATGACTCTCAATTTAATGGAACCG 409
||| | || | | | || |||||||| |||||| |||| |||||||||| |||
Sbjct 239 ACGACGGCGA---G--GA--T-GT-GTCGACGATTGATGATTCTCGATTTAATGGATCCG 289
Query 410 AAGGAGAGAATGAATTGACGAGGATTGAGAGTAGAGTTTCAGATCCGTTGACTGATGCAA 469
|| |||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 290 AAAGAGATAATCAATCGACGAGGATCGAGAGTAGAGTTTCAGATCCGTTGACTGATGCAA 349
Query 470 CCGGAGGAGACTTTTTGGTTGGAGAGGATAGGGTTTTACGGTGGTTACAAGCTTTGGACA 529
|||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
Sbjct 350 CCGGAGGAGACTTTTTGGTTGGTGAGGATAGGGTTTTGCGGTGGTTGCAAGCTTTGGATA 409
Query 530 TGCAAGTTATGGGAGCTTGTCGAGGTGATGAGAGATTGAAGCCGTTGTTGAAGCTTAACG 589
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 410 TGCAAGTTATGGGAGCTTGTCGAGGTGACGAGAGATTGAAGCCGTTGTTGAAGCTTAACG 469
Query 590 TTTCTAATGGAATGGCTGAAGATCGATTGCTTGCGCATCTTAGCCAGCACTTCGAGCCTG 649
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 470 TTTCTAATGGAATGGCTGAAGATCGATTGCTTGCCCATCTTAGTCAGCACTTCGAGCCGG 529
Query 650 CGGAAATTGGTATGCTGGCTAGATGTTTTTGCATACCTCTGGTTTCGGTTCGCGTCGGGA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CGGAAATTGGTATGCTGGCTAGATGTTTTTGCATACCTCTGGTTTCGGTTCGCGTCGGGA 589
Query 710 AGATTATA-AAGGAAGGGATTCTAATGCGCCCCACTCCCATAAGGGGTAACCTGAGCCTT 768
|||||| | |||||||| | ||||||||||||||||||||||||||||||| ||||||||
Sbjct 590 AGATTA-AGAAGGAAGGAACTCTAATGCGCCCCACTCCCATAAGGGGTAACTTGAGCCTT 648
Query 769 ATGGTCTTGCCAACATCTGACTTGAGACTCTCATTTATTGGAGACAATGGTCATTCAGAA 828
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 649 ATGGTCTTGCCAACATCTGACTTGAGACTCTCATTTATCGGAGACAATGGTCATTCAGAA 708
Query 829 CAACTCTTTACCTATACCAGCAAATCTCAGTGCTCTGCGGTGTCAATTGAGGAGATAACT 888
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CAACTCTTTACGTATACCAGCAAATCTCAGTGCTCTGCGGTGTCAATTGAGGAGATAACT 768
Query 889 GTGGACAGCTCTGGTAGATCTTTTGTTATAAGGATCGCAAATGGCAATGCTTTTTACTAT 948
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 769 GCGGACAGCTCTGGTAGATCTTTTGTTATAAGGATCGCAGATGGCAATGCTTTTTACTAT 828
Query 949 TGGTGCTCAGAGAAGTCAAAACTTCTGGGAACTGAATTGCGTAGGAAGATGAAAGACTTG 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TGGTGCTCAGAGAAGTCAAAACTTCTGGGAACTGAATTGCGTAGGAAGATGAAAGACTTG 888
Query 1009 ATCAAGAAGAAGCCATCAATCTCAGAATTAACTGGAATTGAAGAATCACGTCTTGGCTCT 1068
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 889 ATCAAGAAGAAGCCATCAATCTCGGAACTAACTGGAATTGAAGAATCACGACTTGGCTCT 948
Query 1069 GTTGCTTCTCATCTCCGTTTGTATCTCATGGGTTCAGTGGTGCCTAACATCAAAGGTTGT 1128
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 949 GTTGCTTCTCATCTCCGTTTGTATCTTATGGGATCAGTGGTACCTAACATCAAAGGTTGT 1008
Query 1129 CAGGTCCCATCTCCTGATTCATCATCATCTTCTGGCTTTTCTGAAACAGCTGA-T--TCC 1185
| |||| |||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 1009 CCGGTCTCATCTCCTGATTCATCATCATCTTCTGGCTCTTCTGAAACAGCTGATTCCTCC 1068
Query 1186 TCCTCGAGTGCATCATCAAAATCTCTTAGAGCACGCCACTGTGGGACTCAACAGACAAAG 1245
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1069 TCCTCGAGTGCATCCTCAAAATCTCTTAGAGCACGCCACGGTGGGACTCAACAGACAAAG 1128
Query 1246 ACCCAAGGAAGCCTCAGCCCTAGAGCAAGCTCCTTCAAAGAAAACACACTGAGAAA-TGC 1304
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1129 ACTCAAGGAAGCCTCAGCCCTAGAGCAAGCTCCTTCAAAGAAAACACACTGAGAAACT-C 1187
Query 1305 TTCTCTACGTATCTCCTCTAGAGATAAATCAAAGGGACACAGTGAAGGCCATTTCTCAAT 1364
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1188 TTCTCTACGTATCTCCTCTAGAGATAAATCAAAGCGACGCAGTGAAGGCCATTTCTCAAT 1247
Query 1365 CTTTGATAA--T-TCATCCATTACCTCTATCCCCACCAATGTAGAGGGTTTTATCCAGTC 1421
||||||||| | | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1248 CTTTGATAATTTATTATCCATTACCTCTATCCCCACCAATGTAGAGGGTTTTCTCCAGTC 1307
Query 1422 AGAAGGAGAAGTTGAAGAAGCTACTGAGAATTATAATGGAATCAGACAAATTATTGCTTT 1481
||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||||||
Sbjct 1308 AGAAGGAGAAGGTGAAGAAGCCACTGAGAATAATAATGGAATCAGTCAAATTATTGCTTT 1367
Query 1482 TGAAGAAGCAGAGTCAACACCAAGTACAATGACCGGACCTCCCCCATTTCCTTTGAAGAT 1541
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 CGAAGAAGGGGAGTCAACACCAAGTACAATGACCGGACCTCCCCCATTTCCTTTGAAGAT 1427
Query 1542 GGGTCCACCAGTCTTTTCTCCTTATTATTGCTGGTGCCCTCCAACCACTTCATCGCTTCA 1601
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1428 GGGTCCACCAGTCTTTTCTCCTTATTATTGCTGGTGCCCTCCAACCACCTCATCGCTTCA 1487
Query 1602 CGCACCATCTGCCTCTTATCAGTTCCCTCCACTATCCATTGAGCTACCTTCCCTTCCGCC 1661
| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1488 CTCACCATCTGCTTCTTATCAGTTCCCTCCACTATCCATCGAGCTACCTTCCCTTCCGCC 1547
Query 1662 ACTTTCCTCCTTATTACCAGCATCGGGATCAGATGGATTCTTGATCCCGTCATCACCGCT 1721
||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1548 TCTTTCTTCCTTGTTACCAGCATCAGGATCGGATGGGTTCTTGATCCCGTCATCACCGCT 1607
Query 1722 CGATCTCTCTGACATCCCTCCATTACCATTAGTCCACCACATACCCATTCCAGGCtcatc 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 CGATCTCTCTGACATCCCTCCATTACCATTAGTCCACCACATACCCATTCCAGGCTCATC 1667
Query 1782 atcatcatcatcCCAGCAACAGATGATGATTCCTATAATGTGCGACCCTATTGTTCATAT 1841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 ATCATCATCATCCCAGCAACAGATGATGATTCCTATAATGTGCGACCCTATTGTTCATAT 1727
Query 1842 TCCAGTTATCGATATCTTCTCTTCAGGTCAAAGCTATCTGGTAAGCGCTGGACCCACCGG 1901
||||||||||||||||| |||||| |||||| |||||||||| ||| |||||||||||||
Sbjct 1728 TCCAGTTATCGATATCTACTCTTCGGGTCAAGGCTATCTGGTTAGCACTGGACCCACCGG 1787
Query 1902 GATAATATCCACGGGCATCCCTCCGCTCCCAGTGGAGAATGATTCGCTGGTCGAGAAAGG 1961
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 GATGATATCCACGGGCATCCCTCCGCTCCCAGTGGAGAATGATTCGCTGGTCGAGAAAGG 1847
Query 1962 TGCAAGAGAAACACTACGATTGCTCATAAGCGGAGCCAATGCAACAACATCTACACCTTT 2021
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1848 TGCAAGAGAAACACTACGATTGCTCATAAGCGGAGCCAATGCAACAACCTCTACACCTTT 1907
Query 2022 GAACCATCATGGAAGCAGAGGTCTATACAGTGTGAGCCGGGATGTGAGTGGTGTGAGCTT 2081
|||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1908 GAACCACCATGGAAGCAGAGGTCTATACAGTGGGAGCCGGGACGTGAGTGGTGTGAGCTT 1967
Query 2082 GTTTGCACCTATTGGGTTGCAACAACCGAGTTCAGTTGAGGGAGGAGATGGTGGTGGTGA 2141
||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1968 GTTTGGACCTATTGGGCTGCAACAACCGAGTTCAGTTGACGGAGGAGATGGTGGTGGTGA 2027
Query 2142 GAGTGTGAGCTCAAGCGAAGCAGTGCCTGCGCCTCCCAGAGAGACTTCTGGTTAAttttt 2201
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2028 GAGTGTGAGCTCAGGCGAAGCAGTGCCTGCGCCTCCCAGAGAGACTTCTGGTTAGTTTTT 2087
Query 2202 ttGGTTCTTTGTAAGTGTGGT-CCGAGTTAA-GTGTATAGAAAACTCATCTCTCGCCTAG 2259
||||||||||||||||||||| |||| || ||||||||||||||||||||||| |||
Sbjct 2088 TTGGTTCTTTGTAAGTGTGGTTCCGAAAAAAAGTGTATAGAAAACTCATCTCTCGGTTAG 2147
Query 2260 TTTTTGGTTTTGTTCAGCCCAAGTCTTTTGGTTTCAGGTGTAATTAGTCGGGTTTTTTGT 2319
|| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 2148 TTCTTGGTTTTGTTCATC--AAGTCTTTTGGTT-CAGGTGTAATTAGTCGGGTTTTTTGT 2204
Query 2320 AGCTTGCTTAT-ATTACCTTT-GTTATTTCCGAGTTTCAAATGAAGCTAAGAAATACGAT 2377
||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 2205 AGCTTGCTTATTATTACCTTTTGTTATTTCCGAGTTTCAAAGGAAGCTAAGAAATACGAT 2264
Query 2378 CATAATAAAAAAGTT-CTT-TT--GCAGTATTCATTTTC 2412
||||||||||| ||| ||| || |||||||| ||||||
Sbjct 2265 CATAATAAAAA-GTTACTTATTTTGCAGTATTAATTTTC 2302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90883324570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5