BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39970.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483035 jgi|Araly1|483035|fgenesh2_kg.4__2095__AT2G39970.1 2104 0.0
Ahg333419 jgi|Araly1|333419|fgenesh1_pm.C_scaffold_883000001 608 3e-173
> Ahg483035 jgi|Araly1|483035|fgenesh2_kg.4__2095__AT2G39970.1
Length=1385
Score = 2104 bits (1139), Expect = 0.0
Identities = 1271/1334 (95%), Gaps = 11/1334 (1%)
Strand=Plus/Plus
Query 86 TCATTATTTGGGGAATGGAGAAGAAGCTCCTTTCCTACAGACGCCATCATTAACAACATC 145
||||||||||||||||||||||||||||||| |||||||||| | |||||||| || |
Sbjct 57 TCATTATTTGGGGAATGGAGAAGAAGCTCCTCTCCTACAGAC-TC--CATTAACATCAGC 113
Query 146 CTCTTAAGCTTCTGCGATTCTCTCCGTTTGTCGGAAGATTTCACGACGATTCTTCAATCC 205
|||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct 114 CTCTTAAGCTTCTGCGATTCTCTCCGTTCGTCGGAAGCTTTCACGACGATTTTTCAATCC 173
Query 206 TTATCCGAACCGGAGAAATCATGTCGGACGCTTTGATCAATGGATTGGCTGGAGCTGGTG 265
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 174 TTATCCGAACCGGAGAAATCATGTCGGACGCTTTGATCAATGGATTGGCTGGAGCTGGCG 233
Query 266 GTGGGATCATTGCTCAGCTTCTCACTTATCCTCTTCAAACTGTAAATACGCGCCAACAGA 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GTGGGATCATTGCTCAGCTTCTCACTTATCCTCTTCAAACTGTAAATACGCGCCAACAGA 293
Query 326 CGGAGCGGGATCTGAAGAGGGAGAAGAGGAAACTTGGAACTATCGAACACATGTGTCAGG 385
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CGGAGCGGGATCTGAAAAGGGAGAAGAGGAAACTTGGAACTATCGAACACATGTGTCAGG 353
Query 386 TTGTCAAACAAGAAGGATGGGAGAGGTTATATGGTGGATTGGCGCCGTCTCTTGCTGGAA 445
||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||
Sbjct 354 TTGTCAAACAAGAGGGATGGGAGAGATTATACGGTGGATTGGCACCGTCTCTCGCTGGAA 413
Query 446 CGGCTGCATCACAGGGTGTGTACTACTACTTCTACCAAGTGTTTCGGAATCGAGCTGAAG 505
|||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 414 CGGCAGCATCACAGGGTGTGTACTACTACTTCTACCAGGTGTTTCGGAATCAAGCTGAAG 473
Query 506 CCACAGCTCTTGCACGGAAGAAGAAAGGTTTGGGTGACGGATCAGTTGGGATGTTTGCTT 565
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 474 CCACAGCTCTTGCACGGAAGAAGAAAGGGTTGGGTGACGGATCAGTTGGGATGTTTGCTT 533
Query 566 CACTTTTAGTGGCTGCCTTTGCCGGATCGGTTAATGTTCTTATGACGAATCCGATTTGGG 625
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 534 CACTTTTAGTGGCTGCCTTTGCTGGATCGGTTAATGTTCTTATGACGAATCCAATTTGGG 593
Query 626 TGATTGTTACGCGTATGCAGACCCACAGAAAAATGACAAAAGATCAAACAGCGGCCCCCG 685
|||||||||| || ||||||||||||||||||||||||||||||||||| || ||| | |
Sbjct 594 TGATTGTTACTCGCATGCAGACCCACAGAAAAATGACAAAAGATCAAACTGCTGCCTCTG 653
Query 686 AGTCACCTTCTTCTAATGCAGAAGCTCTGGTTGCTGTTGAGCCGCGTCCATATGGGACCT 745
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 654 AGTCACCTTCTTCTGATGCAGAAGCTCTGGTTGCAGTTGAGCCGCGTCCATATGGAACCT 713
Query 746 TTAATACGATTCGAGAGGTTTACGATGAAGCTGGAATAACTGGCTTCTGGAAAGGTGTAA 805
| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 714 TCAATACGATTCAAGAGGTTTACGATGAAGCTGGAGTGACTGGCTTCTGGAAAGGTGTAA 773
Query 806 TTCCAACATTGATCATGGTAAGTAATCCGTCAATGCAATTTATGTTGTACGAGACAATGC 865
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 774 TTCCAACATTGATCATGGTAAGTAATCCGTCAATGCAATTTATGTTGTATGAGACAATGT 833
Query 866 TAACCAAGCTGAAGAAAAAGCGTGCCTTGAAGGGTAGCAACAACGTTACCGCTTTGGAGA 925
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 834 TAACCAAGCTGAAGAAAAAGCGTGCCTTGAAGGGTAGCAACAGCGTAACCGCTTTGGAGA 893
Query 926 CATTTCTTCTCGGAGCTGTGGCGAAACTCGGAGCTACAGTCACAACTTACCCTCTCTTGG 985
|||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 894 CATTTCTTCTTGGAGCTGTGGCTAAACTCGGAGCTACAGTCACAACTTATCCTCTCTTGG 953
Query 986 TTGTAAAGTCGCGACTTCAAGCCAAACAGGTCACAACAGGGGACAAAAGACAACAATACA 1045
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 954 TTGTAAAGTCGCGACTTCAAGCCAAACAGGTCACAACAGGGGACAAAAGACACCAGTACA 1013
Query 1046 AAGGAACATTGGACGCGATTCTGAAAATGATTCGATATGAAGGGCTTTACGGGTTTTATA 1105
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1014 AAGGAACATTGGACGCGATTCTGAAAATGATTCGATATGAAGGGCTTTACGGGTTTTACA 1073
Query 1106 AAGGGATGAGCACAAAGATTGTGCAGAGCGTTTTAGCTGCTGCGGTTCTGTTCATGATCA 1165
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1074 AAGGGATGAGCACAAAGATTGTGCAGAGCGTTTTAGCAGCTGCGGTTCTGTTCATGATCA 1133
Query 1166 AGGAAGAGCTTGTCAAGGGAGCTAAGCTGTTGCTCTCAAACGCTACCTCTAGCTAAGTCA 1225
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1134 AGGAAGAGCTTGTCAAGGGAGCTAAGCTGTTGCTCTCAAATGCAACCTCTAGCTAAGTCA 1193
Query 1226 AGTCCAAGCCTTCTTGAATGAACGCTAGTAGTT----AGAAATAAATAAAAATAGATTAA 1281
|||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 1194 AGTCCAAGCCTTCTTGAATGAACGCTAGTATTTTTTTAGAAATAAATAAAAATAGATTTA 1253
Query 1282 -ATTTCCAATAGTTTTCTTGATTAATTATTACACTATTGGGATTGTTGTTCATTTCCTGA 1340
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1254 TATTTCCAATAGTTTTCTTGATTAATTATCACACTATTGGGATTGTCGTTCATTTCCTGA 1313
Query 1341 TGATTGCAATTGATTATTGTAATTTCTGCAAGATTCTTTAGTAATGAAA-TCTGAATAAA 1399
||||||||||||||||||||| |||||||||||||||| |||| ||||| ||| ||||||
Sbjct 1314 TGATTGCAATTGATTATTGTATTTTCTGCAAGATTCTT-AGTA-TGAAAATCTCAATAAA 1371
Query 1400 GTTTGGCAGATTTC 1413
||||||||||||||
Sbjct 1372 GTTTGGCAGATTTC 1385
> Ahg333419 jgi|Araly1|333419|fgenesh1_pm.C_scaffold_883000001
Length=414
Score = 608 bits (329), Expect = 3e-173
Identities = 351/362 (97%), Gaps = 0/362 (0%)
Strand=Plus/Plus
Query 226 ATGTCGGACGCTTTGATCAATGGATTGGCTGGAGCTGGTGGTGGGATCATTGCTCAGCTT 285
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTCGGACGCTTTGATCAATGGATTGGCTGGAGCTGGCGGTGGGATCATTGCTCAGCTT 60
Query 286 CTCACTTATCCTCTTCAAACTGTAAATACGCGCCAACAGACGGAGCGGGATCTGAAGAGG 345
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CTCACTTATCCTCTTCAAACTGTAAATACGCGCCAACAGACGGAGCGGGATCTGAAAAGG 120
Query 346 GAGAAGAGGAAACTTGGAACTATCGAACACATGTGTCAGGTTGTCAAACAAGAAGGATGG 405
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GAGAAGAGGAAACTTGGAACTATCGAACACATGTGTCAGGTTGTCAAACAAGAGGGATGG 180
Query 406 GAGAGGTTATATGGTGGATTGGCGCCGTCTCTTGCTGGAACGGCTGCATCACAGGGTGTG 465
||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 181 GAGAGATTATACGGTGGATTGGCACCGTCTCTCGCTGGAACGGCAGCATCACAGGGTGTG 240
Query 466 TACTACTACTTCTACCAAGTGTTTCGGAATCGAGCTGAAGCCACAGCTCTTGCACGGAAG 525
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 TACTACTACTTCTACCAGGTGTTTCGGAATCAAGCTGAAGCCACAGCTCTTGCACGGAAG 300
Query 526 AAGAAAGGTTTGGGTGACGGATCAGTTGGGATGTTTGCTTCACTTTTAGTGGCTGCCTTT 585
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAAAGGGTTGGGTGACGGATCAGTTGGGATGTTTGCTTCACTTTTAGTGGCTGCCTTT 360
Query 586 GC 587
||
Sbjct 361 GC 362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5