BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39980.1
Length=2284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934773 jgi|Araly1|934773|scaffold_402761.1 2305 0.0
Ahg887522 jgi|Araly1|887522|Al_scaffold_0883_3 665 0.0
Ahg934772 jgi|Araly1|934772|scaffold_402760.1 577 1e-163
Ahg359756 jgi|Araly1|359756|fgenesh1_pg.C_scaffold_883000002 560 1e-158
> Ahg934773 jgi|Araly1|934773|scaffold_402761.1
Length=1492
Score = 2305 bits (1248), Expect = 0.0
Identities = 1415/1496 (95%), Gaps = 10/1496 (1%)
Strand=Plus/Plus
Query 53 ACCAACGAATA-AAACAAAAATGCCTTCTTTAGAGAAATCTGTAACAATAATCTCAAGAA 111
|||||| || | ||||||||||||||||||||||||| ||||| ||||||| ||||||||
Sbjct 1 ACCAACAAAAAGAAACAAAAATGCCTTCTTTAGAGAACTCTGTTACAATAAACTCAAGAA 60
Query 112 ACAGAGTCTTCCCAGACCAAAAGTCAACCCTCGTTGACCTCAAGCTCTCCGTCTCCGATC 171
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GCAGAGTCTTCCCAGACCAAAAGTCAACCCTCGTTGACCTCAAGCTCTCCGTCTCTGATC 120
Query 172 TTCCCATGCTCTCTTGCCACTACATCCAAAAAGGTTGTCTTTTCACGTGCCCTA-ACCTT 230
|||||||||||||||||||||||||||||||||||||||| |||||| | || | |||||
Sbjct 121 TTCCCATGCTCTCTTGCCACTACATCCAAAAAGGTTGTCTCTTCACGCGTCC-ACACCTT 179
Query 231 CCTCTCCCCGCGCTTAtctcacacctcaaacactctctctcaatcactctcacccacttc 290
||||||| ||||||| |||| |||||||||||||| ||||| ||||||||| | ||||||
Sbjct 180 CCTCTCCACGCGCTTCTCTCTCACCTCAAACACTCACTCTCCATCACTCTCTCTCACTTC 239
Query 291 cctcctctcgctggccgtctctcaacctcctcctccGGCCACGTTTTCCTCACCTGCAAT 350
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCTCCTCTCGCCGGCCGTCTCTCAACCTCCTCCTCCGGCCACGTTTTCCTCACCTGCAAT 299
Query 351 GACGCCGGCGCCGATTTTGTTTTCGCCCAAGCAAAATCCATCCACGTGAGCGACGTGATC 410
||||||||||||||||| ||||||||| |||| |||||| ||||||||||||| ||||||
Sbjct 300 GACGCCGGCGCCGATTTCGTTTTCGCCGAAGCGAAATCCGTCCACGTGAGCGATGTGATC 359
Query 411 GCCGGAATCGACGTTCCCGATGTAGTCAAAGAGTTTTTCACCTACGACAGAGCTGTGAGC 470
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCCGGAATCGACGTTCCCAATGTAGTCAAAGAGTTTTTCACCTACGACAGAGCTGTGAGC 419
Query 471 TACGAGGGACATAACAGACCAATCCTCGCCGTTCAAGTGACGGAACTGAA-CGACGGCGT 529
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 420 TACGAGGGACATAACAGACCAATCCTCGCCGTTCAAGTAACGGAACT-AATTGACGGCGT 478
Query 530 TTTCATCGGATGCTCCGTTAACCACGCCGTGACTGACGGAACCTCGCTGTGGAATTTCAT 589
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTTCATCGGGTGCTCTGTTAACCACGCCGTGACTGACGGAACCTCGCTGTGGAATTTCAT 538
Query 590 TAACACCTTCGCGGAGGTTTCTAGAGGTGCTAAGAATGTGACACGTCAGCCTGATTTTAC 649
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 539 TAACACCTTCGCGGAGGTTTCTAGAGGTGTTAAGAATGTGACACGTCAGCCTGATTTTAC 598
Query 650 GCGGGAGTCTGTGCTAATCTCACCGGCTGTGCTCAAAGTCCCTCAAGGTGGTCCAAAGGT 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 599 GCGGGAGTCTGTGCTAATCTCACCGGCTGTGCTCAAAGTCCCTCAAGGTGGTCCTAAGGT 658
Query 710 GACATTTGACGAAAACGCGCCGTTACGTGAACGGATATTCAGTTTCAGTAGAGAATCGAT 769
||| ||||||||||| |||||||||||||||||||| |||||||| || | |||||||||
Sbjct 659 GACGTTTGACGAAAAGGCGCCGTTACGTGAACGGATTTTCAGTTTTAGCAAAGAATCGAT 718
Query 770 TCAAGAGCTTAAAGCTGTGGTGAACAAGAAGAAATGGTTGACGGTTGATAACGGCGAAAT 829
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 719 TCAAGAGCTTAAAGCTGCGGTGAACAAGAAGAAATGGTTGACGGTTAATAACGGCGAAGT 778
Query 830 AGACGGTGTTGAGTTGTTAGGGAAA-CAAAGCAACGATAAACTTAACGGAAAAGAAAACG 888
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 AGACGGTGTTGAGTTGTT-GGGAAAGCAAAGCAACGATAAACTTAACGGAAAAGAAAACG 837
Query 889 GTATTTTAACGGAAATGTTGGAGAGTTTGTTTGGGAGAAACGACGCCGTTTCGAAACCCG 948
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 838 GTATATTAACGGAAATGTTAGAGAGTTTGTTTGGAAGAAACGACGCCGTTTCGAAACCCG 897
Query 949 TCGCGGTTGAGATCTCGTCGTTTCAATCTCTATGCGCGTTGCTTTGGCGTGCGATCACAC 1008
| | |||||||||||||||||| || |||||||| ||||||||||||||||||||||| |
Sbjct 898 TTGTGGTTGAGATCTCGTCGTTCCAGTCTCTATGTGCGTTGCTTTGGCGTGCGATCACTC 957
Query 1009 GTGCGAGGAAGCTTCCGAGTTCGAAAACGACTACGTTTCGTATGGCTGTGAATTGTCGTC 1068
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 958 GTGCGAGGAAGCTTCCGAGTTCAAAAACGACTACGTTTCGTATGGCTGTAAATTGTCGCC 1017
Query 1069 ACCGTTTGAGTCCTAAACTGAATCCGGAGTATTTCGGAAACGCGATTCAAAGCGTTCCTA 1128
|||| || |||||||| ||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1018 ACCGGTTAAGTCCTAAGTTGAATCCGGAGTATTTCGGAAACGCGATTCAGAGCGTTCCGA 1077
Query 1129 CGTTTGCGACTGCGGCAGAGGTTTTGTCACGTGATCTTAAATGGTGCGCTGATCAGCTTA 1188
||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1078 CGTTTGCGACTGCGGGGGAGGTTTTGTCTCGTGATCTTAAATGGTGCGCCGATCAGCTTA 1137
Query 1189 ACCAGAGTGTTGCGGCTCATCAAGACGGGAGGATTCGTAGCGTTGTGGCGGATTGGGAAG 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACCAGAGTGTTGCGGCTCATCAAGACGGGAGGATTCGTAGCGTTGTGGCGGATTGGGAAG 1197
Query 1249 CGAATCC-CAGGTGTTTTCCTCTTGGAAATGCCGACGGAGCTTCGGTTACTATGGGAAGC 1307
||||||| | |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1198 CGAATCCTC-GGTGTTTTCCTCTTGGAAATTCTGACGGAGCTTCGGTTACTATGGGAAGC 1256
Query 1308 TCTCCGAGGTTTCCGATGTATGATAATGATTTCGGGTGGGGAAGGCCGGTGGCGGTTAGA 1367
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1257 TCGCCGAGGTTTCCGATGTATGATAATGATTTTGGGTGGGGAAGACCGGTGGCGGTTAGA 1316
Query 1368 AGTGGACGGTCGAATAAGTTTGATGGGAAGATTTCGGCGTTTCCGGGGAGGGAAGGAAAC 1427
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1317 AGCGGACGGTCGAATAAGTTTGACGGGAAGATTTCGGCGTTTCCGGGGAGGGAAGGAAAC 1376
Query 1428 GGGACTGTTGATTTGGAGGTGGTTTTATCGCCGGAGACTATGGCTGGGATTGAATCTGAC 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GGGACTGTTGATTTGGAGGTGGTTTTATCGCCGGAGACTATGGCTGGGATTGAATCTGAC 1436
Query 1488 GGTGAGTTTATGCGATACGTGACTAATAAGTAACGGAGTTTATGAAT-AATAACGT 1542
||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1437 AGTGAGTTTATGCGATACGTGACTAAAAAGTAACGGAGTTTATGGATTAATAACGT 1492
> Ahg887522 jgi|Araly1|887522|Al_scaffold_0883_3
Length=453
Score = 665 bits (360), Expect = 0.0
Identities = 413/439 (94%), Gaps = 2/439 (0%)
Strand=Plus/Plus
Query 855 CAAAGCAACGATAAACTTAACGGAAAAGAAAACGGTATTTTAACGGAAATGTTGGAGAGT 914
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1 CAAAGCAACGATAAACTTAACGGAAAAGAAGACGGTATATTAACGGAAATGTTGGAGAGT 60
Query 915 TTGTTTGGGAGAAACGACGCCGTTTCGAAACCCGTCGCGGTTGAGATCTCGTCGTTTCAA 974
|||||||| |||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 61 TTGTTTGGAAGAAACGACGCCGTTTCGAAACCCGTTGTGGTTGAGATCTCGTCGTTCCAG 120
Query 975 TCTCTATGCGCGTTGCTTTGGCGTGCGATCACACGTGCGAGGAAGCTTCCGAGTTCGAAA 1034
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 121 TCTCTATGTGCGTTGCTTTGGCGTGCGATCACTCGTGCGAGGAAGCTTCCGAGTTCAAAA 180
Query 1035 ACGACTACGTTTCGTATGGCTGTGAATTGTCGTCACCGTTTGAGTCCTAAACTGAATCCG 1094
||||||||||||||||||||||| |||||||| ||||| || |||||||| ||||||||
Sbjct 181 ACGACTACGTTTCGTATGGCTGTAAATTGTCGCCACCGGTTAAGTCCTAAGTTGAATCCG 240
Query 1095 GAGTATTTCGGAAACGCGATTCAAAGCGTTCCTACGTTTGCGACTGCGGCAGAGGTTTTG 1154
||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 241 GAGTATTTCGGAAACGCGATTCAGAGCGTTCCGACGTTTGCGACTGCGGGGGAGGTTTTG 300
Query 1155 TCACGTGATCTTAAATGGTGCGCTGATCAGCTTAACCAGAGTGTTGCGGCTCATCAAGAC 1214
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTCGTGATCTTAAATGGTGCGCCGATCAGCTTAACCAGAGTGTTGCGGCTCATCAAGAC 360
Query 1215 GGGAGGATTCGTAGCGTTGTGGCGGATTGGGAAGCGAATCC-CAGGTGTTTTCCTCTTGG 1273
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 361 GGGAGGATTCGTAGCGTTGTGGCGGATTGGGAAGCGAATCCTC-GGTGTTTTCCTCTTGG 419
Query 1274 AAATGCCGACGGAGCTTCG 1292
|||| | ||||||||||||
Sbjct 420 AAATTCTGACGGAGCTTCG 438
> Ahg934772 jgi|Araly1|934772|scaffold_402760.1
Length=420
Score = 577 bits (312), Expect = 1e-163
Identities = 369/395 (93%), Gaps = 10/395 (3%)
Strand=Plus/Minus
Query 1704 TTGCCTTAACCAGTCTCGAGGCCAAGATAAACTTCAAGATAACCAACAGTTACGATATTT 1763
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TTG-CTTAACCAGTCTCGAGGCCAAGATAAACTTCAAGATAACCAACAGTTACGATATTT 346
Query 1764 CCACTGGTGTCCAAGTTCTGAAGTTTGATCTTACGGTACACATTAGCGTTTGTTTTCATG 1823
||||||||||||||||||| |||||||| |||||||||||||||||| ||||| ||||||
Sbjct 345 CCACTGGTGTCCAAGTTCTCAAGTTTGACCTTACGGTACACATTAGCATTTGTCTTCATG 286
Query 1824 GGCAATGCTGTATTTGCCCTCCCA-ATGAAAAATGCGTCAGTGTCAGCTGAATTTACACT 1882
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 285 GGCAATGCTGTATTTGCCCTCCCACAA-AAAAATGCGTCAGTGTCAGCTGAATTTACACT 227
Query 1883 GAACAACTCCAAATTGAGAAAAGATGAAGCCATGTTTTGAGGAAGATGCAAAACCTCACG 1942
||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||
Sbjct 226 GAACAACTCCAAATTGAGAAACGATGCAGCCTTGTTTTGAGGAAGATGCAAAACCTCACG 167
Query 1943 GAACTCAGGATCTGCGTTTGTTGTCACAATCTTTGTTTGGCGTGGATCATCTTCGTTAGT 2002
|||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||
Sbjct 166 GAACTCAGGATCTGCGTTTGTTGTTACAATCTTTGTTTGCCGTCGATCATCTTCGTTTGT 107
Query 2003 CCAAGCT-CTCAACTT-GTAGTTGTATTT-TTGTTCACCACCGTCGCCAATTCCTGATGC 2059
||||||| | || ||| |||||||||||| || | |||||||||||||||||||||||||
Sbjct 106 CCAAGCTAC-CA-CTTTGTAGTTGTATTTCTTAT-CACCACCGTCGCCAATTCCTGATGC 50
Query 2060 TCCTACTACCATTACGAATAAGTCCATTTT-TTGT 2093
||| ||||||||||| ||||||||||| || ||||
Sbjct 49 TCCAACTACCATTACAAATAAGTCCATCTTGTTGT 15
> Ahg359756 jgi|Araly1|359756|fgenesh1_pg.C_scaffold_883000002
Length=378
Score = 560 bits (303), Expect = 1e-158
Identities = 357/382 (93%), Gaps = 8/382 (2%)
Strand=Plus/Minus
Query 1709 TTAACCAGTCTCGAGGCCAAGATAAACTTCAAGATAACCAACAGTTACGATATTTCCACT 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TTAACCAGTCTCGAGGCCAAGATAAACTTCAAGATAACCAACAGTTACGATATTTCCACT 319
Query 1769 GGTGTCCAAGTTCTGAAGTTTGATCTTACGGTACACATTAGCGTTTGTTTTCATGGGCAA 1828
||| |||||||||| |||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct 318 GGTCTCCAAGTTCTCAAGTTTGACCTTACGGTACACATTAGCATTTGTCTTCATGGGCAA 259
Query 1829 TGCTGTATTTGCCCTCCCA-ATGAAAAATGCGTCAGTGTCAGCTGAATTTACACTGAACA 1887
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 258 TGCTGTATTTGCCCTCCCACAA-AAAAATGCGTCAGTGTCAGCTGAATTTACACTGAAAA 200
Query 1888 ACTCCAAATTGAGAAAAGATGAAGCCATGTTTTGAGGAAGATGCAAAACCTCACGGAACT 1947
|||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||
Sbjct 199 ACTCCAAATTGAGAAACGATGCAGCCTTGTTTTGAGGAAGATGCAAAACCTCACGGAACT 140
Query 1948 CAGGATCTGCGTTTGTTGTCACAATCTTTGTTTGGCGTGGATCATCTTCGTTAGTCCAAG 2007
||||||||||||||||||| |||||||||||||| ||| ||||||||||||| |||||||
Sbjct 139 CAGGATCTGCGTTTGTTGTTACAATCTTTGTTTGCCGTCGATCATCTTCGTTTGTCCAAG 80
Query 2008 CT-CTCAACTT-GTAGTTGTATTT-TTGTTCACCACCGTCGCCAATTCCTGATGCTCCTA 2064
|| | || ||| |||||||||||| || | |||||||||||||||||||||||||||| |
Sbjct 79 CTAC-CA-CTTTGTAGTTGTATTTCTTAT-CACCACCGTCGCCAATTCCTGATGCTCCAA 23
Query 2065 CTACCATTACGAATAAGTCCAT 2086
|||||||||| |||||||||||
Sbjct 22 CTACCATTACAAATAAGTCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86007773210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5