BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40000.1
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483040 jgi|Araly1|483040|fgenesh2_kg.4__2100__AT2G40000.1 2095 0.0
> Ahg483040 jgi|Araly1|483040|fgenesh2_kg.4__2100__AT2G40000.1
Length=1420
Score = 2095 bits (1134), Expect = 0.0
Identities = 1354/1454 (93%), Gaps = 40/1454 (3%)
Strand=Plus/Plus
Query 61 aaaaaaataaaaaTGGTTGATATGGATTGGAAGAGGAAGATGGTATCATCAGATTTACCA 120
||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAAAAAA-AGAAATGGTTGATATGGATTGGAAGAGGAAGATGGCATCATCAGATTTACCA 59
Query 121 AACTCACCTAAGCTTTCTTCAAAGCTTCACGTAACTATTCCATCACCGTTCAAAATCGTC 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 60 AACTCACCTAAGCTTTCTTCAAAGCTTCACGTAACTATTCCATCACCATTCAAAATCGTC 119
Query 181 CCTGTTTCATCTCCGATCTCATGTTCAGCACCTGCTCTTTGCTCTGCTTACGAGCTTTAC 240
|||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 120 CCTGTTTCGTCTCCGATCTCTTGTTCCGCACCAGCGCTTTGCTCTGCTTACGAGCTTTAC 179
Query 241 CTTCGTCTCCCTGAGCTAAGAAAGCTCTGGTCATCTCGTGATTTTCCTCA-ATGGACATC 299
|||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 180 CTTCGTCTTCCTGAGCTAAGAAAGCTCTGGTCATCTCGTGATTTTCCT-ACGTGGACGTC 238
Query 300 AGAGCCGATTCTCAAACCAGCTCTTCAAGCTTTGGAGATCAGTTTCAGATTAGTTTTCGC 359
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 239 AGAGCCGATTCTTAAACCGGCTCTTCAAGCTTTGGAGATCAGTTTTAGATTAGTTTTCGC 298
Query 360 CGTTTGTTCTGATACTAGACCGTACATCAACCACCGTGAATGGAACCGGAGGCTAGATTC 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 299 CGTTTGTTCTGATACTAGACCGTATATCAACCACCGTGAATGGAACCGGAGGCTAGATTC 358
Query 420 TCTCATCACGAAGCAGATCCAGCTTGTAGCAGCGATCTGCGAAGATGA--A-GAAGAAGA 476
|||| |||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 359 TCTCGTCACGAAGCAGATCCAGCTTGTAGCAGCGATCTGCGAAGAAGACGATGAAGAAGA 418
Query 477 AGGTATATCAGCGGAGGCTCCGGTCGGCGGTGGACGGAGTTCGTTGAGTTTGTTACCGCA 536
|||| | | |||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 419 AGGT-GA-C-TCGGAGGTTCCGGTCAGCGATGGACGGAGTTCGTTGAGTTTGTTACCGCA 475
Query 537 GCTAGCTACGTGGAGGAGATCAGAGGCTTTGGGGAAGAAGATCTTATATACGATCGATAA 596
||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||||||
Sbjct 476 GCTAGCTACGTGGAGGAGATCGGAAGCTTTAGGGAAGAAGATCTTATCTACGATCGATAA 535
Query 597 CGAGATGAGTCGGTGTAAGTACACGCTCGGACTCGGTGAACAAAACATCGCCGGAAAACC 656
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 536 CGAGATGAGTCGGTGTAAGTACACGCTTGGACTCGGTGAGCAAAACATCGCCGGAAAACC 595
Query 657 AAATCTCCGGTACGATGCGATTTGCCGACCAAACGAGATCTATAGCCTCAAGGATAATCC 716
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 596 AAATCTCCGGTACGATGCGATTTGCCGACCTAACGAGATCTATAGCCTCAAGGATAATCC 655
Query 717 ATACGCAGATCATATCGATAATCACGAGAATCAAACTCTCTATATCATTCACCAGATCCT 776
|| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 656 ATTCGCAGATCATATCGATAATCAAGAGAATCAAACGCTCTATATCATTCACCAGATCCT 715
Query 777 CGAATCGTGGATCTACGCATCTGGAAATCTTCTGAATCGAATCGTCTCAAGTATCGAAGA 836
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 716 CGAATCGTGGATCTACGCATCTGGAAATCTTCTGAATCGAATCGTCTCCAGTATCGAAGA 775
Query 837 AGAGAAATTCGGAAAAGCTTCAAACGATGTTTACTTGCTGGAGAAGATCTGGAAAATTTT 896
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 776 AGAGAAATTCGAAAAAGCTTCTAACGATGTTTACTTGCTGGAGAAGATCTGGAAACTTTT 835
Query 897 AGCGGAGATTGAAGATCTTCATATGTTGATGGATCCGGAAGATTTTTTGAAATTGAAGAA 956
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 836 AGCGGAGATTGAAGATCTTCATATGTTGATGGATCCGGAGGATTTTCTGAAATTGAAGAA 895
Query 957 ACAGTTACAGATCAAATCGACGGGTAAAAACGATGCGTTTTGTTTCAGATCTAAAGGATT 1016
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 896 GCAGTTACAGATCAAATCGACGGGGAAAAACGATGCGTTTTGTTTCAGATCTAAAGGGTT 955
Query 1017 AGTGGAGATGATGAAGATGTCGAAAGATCTGAGACAGAAAGTACCGGCGGTCTTGGCGGT 1076
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 956 AGTGGAGATGATGAAGATGTCGAAAGATCTGAGGCAGAAAGTACCGGCGGTGTTGGCGGT 1015
Query 1077 TGAGGTAGATCCAACCGGAGGACCAAGATTACAAGAGGCGGCGATGAAGCTTTACGCGAG 1136
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1016 TGAGGTAGATCCAACCGGAGGACCGAGATTGCAAGAGGCGGCGATGAAGCTTTACGCGAC 1075
Query 1137 GAAGACAGAGTGCGATAAGATTCATTTGCTTCAGGGGATGCAAGCGGTGGAAGCGGCGGC 1196
||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1076 GAAGAGAGAGTGCGATAAGATTCATCTGCTTCAGGGGATGCAAGCGGTTGAAGCGGCGGC 1135
Query 1197 GAAGAGTTTCTTCTT-TGGGTATAGGCAGTTAGTGGCGGCTATGATGGGAAGTGCGGAGA 1255
||||||||||||||| | | ||||||||| |||||||||| ||||||||||| |||||||
Sbjct 1136 GAAGAGTTTCTTCTTCTCG-TATAGGCAGCTAGTGGCGGCGATGATGGGAAGCGCGGAGA 1194
Query 1256 TGAACGCGACGGCGAGTCAAGAGTCGTGTGACTCACTGAGTCAGATATTTATGGAGCCGA 1315
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1195 CGAACGCGACGGCGAGTCAAGAGTCGTGTGACTCGTTGAGTCAGATATTTATGGAGCCGA 1254
Query 1316 CGTATTTCCCGAGCCTTGACGCGGCAAAGACGTTTCT-GGGAGAGTTTTGGAGTCATTTG 1374
||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct 1255 CGTATTTCCCGAGTCTTGACGCGGCAAAGAC-TTTCTTGGGAGAGTTCTGGAGTCATTTG 1313
Query 1375 GGATGATTAAATTTTAATTTCTGCTGGTATAATTATTTAATATAAATTTAAATTGGTGGT 1434
|||||||| | |||||| || | |||||| || | ||||||
Sbjct 1314 GGATGATTCA-TTTTAA-----------AT--T-ATTTAA-AT---T-------GGTGGT 1347
Query 1435 TTGGTTTAATTTAGTTTGTAAGATAGTGAAATTTTTGGAACATTTGACGATCCATATTTG 1494
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1348 TTGGTT-AATTTAGTTTGTAAGATACTGAAATTTTTGGAACATTTGACGATCCATATTTG 1406
Query 1495 AATACAAATTCATT 1508
||||||||||||||
Sbjct 1407 AATACAAATTCATT 1420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56868735785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5