BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40010.1
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483041 jgi|Araly1|483041|fgenesh2_kg.4__2101__AT2G40010.1 1709 0.0
> Ahg483041 jgi|Araly1|483041|fgenesh2_kg.4__2101__AT2G40010.1
Length=1096
Score = 1709 bits (925), Expect = 0.0
Identities = 1042/1098 (95%), Gaps = 9/1098 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGTGAAAGCAACAAAGGCGGAGAAGAAGATCGTTTACGATTCAAAGCTTTGTCAG 60
||||| ||||||| |||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCAGTGAAAGGAACAAAAGCAGAGAAGAAGATCGTTTACGATTCGAAGCTTTGTCAG 60
Query 61 CTTTTGAATGAGTACTCTCAGATTCTTGTCGTTGCAGCTGACAATGTTGGATCAACTCAG 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTTTTGAATGAGTACCCTCAGATTCTTGTCGTTGCAGCTGACAATGTTGGATCCACTCAG 120
Query 121 CTTCAGAACATAAGGAAAGGTTTACGAGGTGATTCAGTTGTTTTGATGGGGAAGAACACA 180
||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CTTCAGAACATTCGAAAAGGTTTACGAGGTGATTCAGTTGTTTTGATGGGGAAAAACACA 180
Query 181 ATGATGAAGAGATCTGTGAGGATTCATGCTGATAAAACTGGCAATCAAGCTTTCCTCAGT 240
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct 181 ATGATGAAGAGATCTGTGAGGCTCCATGCTGATAAAACTGGCAATCAAGCTTTCCTCAAT 240
Query 241 CTCCTTCCTCTTCTTCAGGGGAATGTTGGGTTGATCTTCACTAAGGGTGACTTGAAGGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCCTTCCTCTTCTTCAGGGGAATGTTGGGTTGATCTTCACTAAGGGTGACTTGAAGGAA 300
Query 301 GTCAGTGAAGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTAGGTTTAGTCGCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GTCAGTGAAGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTAGGTTTAATCGCG 360
Query 361 CCAATTGATGTGGTCGTGCAACCAGGCAACACTGGTCTTGACCCTTCACAGACCTCCTTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CCAATTGATGTGGTCGTGCAACCAGGCAACACTGGTCTTGACCCTTCACAGACATCCTTC 420
Query 421 TTCCAGGTGCTTAACATTCCAACCAAAATCAACAAAGGTACGGTTGAGATCATAACCCCT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCCAGGTGCTTAACATTCCAACCAAAATCAACAAAGGTACGGTTGAGATCATAACCCCC 480
Query 481 GTGGAGCTCATCAAGAAAGGCGACAAAGTCGGTTCATCCGAGGCTGCGCTTCTTGCCAAG 540
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 481 GTGGAGCTCATCAAGAAAGGTGACAAAGTCGGTTCATCTGAGGCTGCGCTTCTAGCCAAG 540
Query 541 CTTGGAATCAGGCCCTTTTCGTATGGTCTCGTTGTTGAGTCAGTCTACGATAATGGGTCA 600
|||||||||||||| || || ||||| ||||| ||||||||||||||||||||||| |||
Sbjct 541 CTTGGAATCAGGCCATTCTCTTATGGCCTCGTCGTTGAGTCAGTCTACGATAATGGCTCA 600
Query 601 GTGTTTAACCCTGAAGTGCTTAACCTCACTGAAGACGACCTTGTTGAGAAGTTTGCAGCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGTTTAACCCTGAAGTGCTTAACCTCACTGAAGACGACCTTGTTGAGAAGTTTGCAGCT 660
Query 661 GGTGTCTCGATGATCACTGCGCTTTCTCTTGCAATCTCTTACCCAACCGTAGCAGCTGCG 720
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 GGTGTCTCGATGATCACCGCGCTTTCTCTTGCAATATCTTACCCAACCGTAGCAGCTGCG 720
Query 721 CCTCACATGTTCCTCAATGCTTACAAGAACGTTCTTGCTGTTGCCTTAGCTACTGAGTAC 780
| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 721 CGTCACATGTTCCTCAATGCTTACAAGAATGTTCTTGATGTTGCCTTAGCTACTGAGTAT 780
Query 781 TCTTTCCCTCAGGCTGAGAATGTGAAGGAGTTCCTAAAGGATCCAACCAAGTTTGCAGTT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCTTTCCCTCAGGCTGAGAATGTGAAGGAGTTCCTAAAGGATCCAACCAAGTTTGCAGTT 840
Query 841 GCAGTGGCTGCACCGG-TTTCAGGAGAGTCTGGTGGAGCAGTGGTGGCAGTAGCTGTTGA 899
|||| ||||||||||| ||| |||||| ||||||||||| || |||||||||||||| ||
Sbjct 841 GCAGCGGCTGCACCGGATTT-AGGAGACTCTGGTGGAGCTGTTGTGGCAGTAGCTGTGGA 899
Query 900 GGAAGAAGCTGCAGAAGAGTCTGATGGGGACATGGGATTTGATCTGTTCGGTTAAAATAC 959
|||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 900 GGAAGAAGCTGCAGAAGAGTCTGATGAGGACATGGGATTCGATTTGTTCGGTTAAAATAC 959
Query 960 ACC-GTCTTATCTTTTGCCAGCCTTTCCTATTTATTTT--ATGGACCTTTAAAACTTTCA 1016
||| |||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||
Sbjct 960 ACCTGTCTTATCTTTTGCCAACCTTTCCTATTTATTTTTTATGGACCTTTTAAATTTTCA 1019
Query 1017 CGTTCAGAATTTCTTTGTT--ACGTTTATGGATATTTTGTTTCTTCATCAAA-ACTACCT 1073
|||||||||| || ||||| ||||||||||||||||||||| ||||||||| | |||||
Sbjct 1020 CGTTCAGAATATCATTGTTGCACGTTTATGGATATTTTGTTTTTTCATCAAATA-TACCT 1078
Query 1074 TTCTGGTTTTAATTTCTC 1091
||||||||||||||||||
Sbjct 1079 TTCTGGTTTTAATTTCTC 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43002650376
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5