BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G40020.3

Length=995
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934782 jgi|Araly1|934782|scaffold_402770.1                        392    2e-108


> Ahg934782 jgi|Araly1|934782|scaffold_402770.1
Length=550

 Score =  392 bits (212),  Expect = 2e-108
 Identities = 242/256 (95%), Gaps = 3/256 (1%)
 Strand=Plus/Plus

Query  130  AGAAGGCTGGATTGATGCGAGAGGATGCAGCACGAGATCGCATGAGAGGATTTGGGTTTC  189
            ||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct  7    AGAAGCCTGGATTGATGCGAGAGGATGCAGCACGAGATCGCATGAGAGTTTTTGGGTTTC  66

Query  190  ATGAGCATGTTATCAGTGAGAGTATTAAGGAACTGTTAGAGGTCTA---CGAAGACCAAT  246
            |||||| |||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct  67   ATGAGCGTGTTATCAGTGAGAGTATTAAGGAACTGTTAGAGGTCTATGGTGAAGACCAAT  126

Query  247  GGTTTTTGATTGAAGATGATAGCTATGGTCCCCTCCTTGCTATCTGCCTTGAAAAGCAAG  306
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  127  GGTTTTTGATTGAAGATGATAGCTATGGTCCCCTCCTCGCTATCTGCCTTGAAAAGCAAG  186

Query  307  AGGAAAAAGAGAAACAATTGGCTGAAGTACAAGCCAACCAATTGCCTGAGAATCACAATG  366
             ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct  187  CGGAAAAAGACAAACAATTGGCTGAAGTCCAAGCCTACCAATTGCCTGAGAATCAAAATG  246

Query  367  AAGAGATGGCTGAGGA  382
            ||||||||||||||||
Sbjct  247  AAGAGATGGCTGAGGA  262


 Score =  226 bits (122),  Expect = 3e-58
 Identities = 142/151 (94%), Gaps = 4/151 (3%)
 Strand=Plus/Plus

Query  427  AGGAGCAGGAGCAGGACATGCATATTGAGTATGGAAGAGACCAAGCTGATGAGTTATCAA  486
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  355  AGGAGCAGGAGCAGGACATGCAAATTGAGTATGGAAGAGACCAAGCTGATGAGTTATCAA  414

Query  487  TCAATAGCGAAGCAGTCAATG-ACCCATCACCAGCAGCTATT-CATTTGGGAGAAGCATC  544
            |||||||||| ||||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct  415  TCAATAGCGATGCAGTCA-TGGACCCATCACCAGCAGCT-TTACATTTGGGAGAAGCATC  472

Query  545  ATCAGATTATGCACAAAGTTCTGTTCGAGGT  575
            | |||||||||||||| |||||||| |||||
Sbjct  473  AGCAGATTATGCACAAGGTTCTGTTGGAGGT  503



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36979229490


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5