BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40050.1
Length=1894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934788 jgi|Araly1|934788|scaffold_402776.1 370 2e-101
Ahg924827 jgi|Araly1|924827|scaffold_200388.1 137 2e-31
Ahg896203 jgi|Araly1|896203|Al_scaffold_0005_169 62.1 1e-08
> Ahg934788 jgi|Araly1|934788|scaffold_402776.1
Length=607
Score = 370 bits (200), Expect = 2e-101
Identities = 339/403 (84%), Gaps = 22/403 (5%)
Strand=Plus/Plus
Query 219 AATTCTTCCCCCGAGTACGTCCTTTC-TACAACGACG-ACCTCTCA-TGATCATCATGTA 275
||||||||||||||||||||| || | |||||| ||| | || || |||||||||||||
Sbjct 190 AATTCTTCCCCCGAGTACGTC-TTCCCTACAACAACGGAT-TC-CAATGATCATCATGTA 246
Query 276 CTCCCTTTGTTTTGGTGCAACAATAAAGAATTTGATG-CTGATGGTGGATGCTACATATG 334
|| ||||||||||||||||||||||||||||||||| | |||||||| ||| |||| ||
Sbjct 247 CTTCCTTTGTTTTGGTGCAACAATAAAGAATTTGATATC-GATGGTGGGTGCGACATGTG 305
Query 335 CGAAGGCTCAAATTCCGGCACCGACTATTATTTCTGCAACTATTGTA-GCAT-AAAA-TT 391
||||||||||||| |||||| |||||||| ||||| | | ||| || | || |||| ||
Sbjct 306 TGAAGGCTCAAATTTCGGCACAGACTATTACTTCTGTATC-ATT-TATG-ATGAAAAATT 362
Query 392 ACACAAAGAATGCATTCAATCTCCACTTATAATCAAACATCCTTACCACCCTGAGCACTA 451
|| | ||||||| | || ||||| |||| ||||||||| ||||||||||||||||| |
Sbjct 363 CCATAGAGAATGCGTCCAGTCTCCTCTTAAAATCAAACACCCTTACCACCCTGAGCATTC 422
Query 452 TCTCCAACTTTTCTTTCATGATGATAACTTTCGTAAGATTGAGTGTTTATGTTGTGGAAG 511
||||||||||| ||||||| | | || | || |||||||||||||||||| ||||
Sbjct 423 TCTCCAACTTTCCTTTCATTTTT-T--CTC-C--AATATTGAGTGTTTATGTTGTAGAAG 476
Query 512 AAAAGCACAT-TGGTTGATTTATCATTGCACCACATGCCAGGCTTTTATGCATCCCATAT 570
|| |||| || || ||| |||||||||| |||| ||| ||||||||||||||||| | ||
Sbjct 477 AAGAGCATATATG-TTGGTTTATCATTGTACCATATGTCAGGCTTTTATGCATCCAACAT 535
Query 571 GTGCGATGAAGCCAATACCTTTTCTTATAGACCCACCAAAAAA 613
||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 536 GTGCGATGAAGCCAATACCCTTTATTATAGACCCACCAAAAAA 578
> Ahg924827 jgi|Araly1|924827|scaffold_200388.1
Length=524
Score = 137 bits (74), Expect = 2e-31
Identities = 149/183 (81%), Gaps = 14/183 (8%)
Strand=Plus/Plus
Query 262 ATGATCA-TCATGTACTCCCTTTGTTTTGGTGCAACAATAAAGAATTTGATGCTGA-TGG 319
||||||| ||| |||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 284 ATGATCATTCA-GTACTCCCTTTGTTTTGGTGCAACAATAAAGAATTTGATG-TCAATGG 341
Query 320 TGGATGCTACAT--ATGCGAAGGCTCAAATTCCGGCACCGACTATTATTTCTGCAACTAT 377
|||||| || | |||||| |||||| ||| || || || ||||||||||| | ||
Sbjct 342 TGGATG-TAG-TGCATGCGATGGCTCATATTTTGGTACTGATTATTATTTCTGTGATTAC 399
Query 378 TGTAGCATAAAAT-TA-CACAAAGAATGCATTCAA-TCTCCACTTATAATCAAACATCCT 434
|||| || |||| || ||||||||||| | | | |||||||||| ||| ||||| |||
Sbjct 400 TGTA--ATCAAATGTATCACAAAGAATGTGT-CGAGTCTCCACTTAAAATAAAACACCCT 456
Query 435 TAC 437
|||
Sbjct 457 TAC 459
> Ahg896203 jgi|Araly1|896203|Al_scaffold_0005_169
Length=486
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 273 GTACTCCCTTTGTTTTGGTGCAACAATAAAGAA 305
|||||||||||||||||||||||||||||||||
Sbjct 355 GTACTCCCTTTGTTTTGGTGCAACAATAAAGAA 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71152577660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5