BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40050.1 Length=1894 Score E Sequences producing significant alignments: (Bits) Value Ahg934788 jgi|Araly1|934788|scaffold_402776.1 370 2e-101 Ahg924827 jgi|Araly1|924827|scaffold_200388.1 137 2e-31 Ahg896203 jgi|Araly1|896203|Al_scaffold_0005_169 62.1 1e-08 > Ahg934788 jgi|Araly1|934788|scaffold_402776.1 Length=607 Score = 370 bits (200), Expect = 2e-101 Identities = 339/403 (84%), Gaps = 22/403 (5%) Strand=Plus/Plus Query 219 AATTCTTCCCCCGAGTACGTCCTTTC-TACAACGACG-ACCTCTCA-TGATCATCATGTA 275 ||||||||||||||||||||| || | |||||| ||| | || || ||||||||||||| Sbjct 190 AATTCTTCCCCCGAGTACGTC-TTCCCTACAACAACGGAT-TC-CAATGATCATCATGTA 246 Query 276 CTCCCTTTGTTTTGGTGCAACAATAAAGAATTTGATG-CTGATGGTGGATGCTACATATG 334 || ||||||||||||||||||||||||||||||||| | |||||||| ||| |||| || Sbjct 247 CTTCCTTTGTTTTGGTGCAACAATAAAGAATTTGATATC-GATGGTGGGTGCGACATGTG 305 Query 335 CGAAGGCTCAAATTCCGGCACCGACTATTATTTCTGCAACTATTGTA-GCAT-AAAA-TT 391 ||||||||||||| |||||| |||||||| ||||| | | ||| || | || |||| || Sbjct 306 TGAAGGCTCAAATTTCGGCACAGACTATTACTTCTGTATC-ATT-TATG-ATGAAAAATT 362 Query 392 ACACAAAGAATGCATTCAATCTCCACTTATAATCAAACATCCTTACCACCCTGAGCACTA 451 || | ||||||| | || ||||| |||| ||||||||| ||||||||||||||||| | Sbjct 363 CCATAGAGAATGCGTCCAGTCTCCTCTTAAAATCAAACACCCTTACCACCCTGAGCATTC 422 Query 452 TCTCCAACTTTTCTTTCATGATGATAACTTTCGTAAGATTGAGTGTTTATGTTGTGGAAG 511 ||||||||||| ||||||| | | || | || |||||||||||||||||| |||| Sbjct 423 TCTCCAACTTTCCTTTCATTTTT-T--CTC-C--AATATTGAGTGTTTATGTTGTAGAAG 476 Query 512 AAAAGCACAT-TGGTTGATTTATCATTGCACCACATGCCAGGCTTTTATGCATCCCATAT 570 || |||| || || ||| |||||||||| |||| ||| ||||||||||||||||| | || Sbjct 477 AAGAGCATATATG-TTGGTTTATCATTGTACCATATGTCAGGCTTTTATGCATCCAACAT 535 Query 571 GTGCGATGAAGCCAATACCTTTTCTTATAGACCCACCAAAAAA 613 ||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 536 GTGCGATGAAGCCAATACCCTTTATTATAGACCCACCAAAAAA 578 > Ahg924827 jgi|Araly1|924827|scaffold_200388.1 Length=524 Score = 137 bits (74), Expect = 2e-31 Identities = 149/183 (81%), Gaps = 14/183 (8%) Strand=Plus/Plus Query 262 ATGATCA-TCATGTACTCCCTTTGTTTTGGTGCAACAATAAAGAATTTGATGCTGA-TGG 319 ||||||| ||| |||||||||||||||||||||||||||||||||||||||| | | ||| Sbjct 284 ATGATCATTCA-GTACTCCCTTTGTTTTGGTGCAACAATAAAGAATTTGATG-TCAATGG 341 Query 320 TGGATGCTACAT--ATGCGAAGGCTCAAATTCCGGCACCGACTATTATTTCTGCAACTAT 377 |||||| || | |||||| |||||| ||| || || || ||||||||||| | || Sbjct 342 TGGATG-TAG-TGCATGCGATGGCTCATATTTTGGTACTGATTATTATTTCTGTGATTAC 399 Query 378 TGTAGCATAAAAT-TA-CACAAAGAATGCATTCAA-TCTCCACTTATAATCAAACATCCT 434 |||| || |||| || ||||||||||| | | | |||||||||| ||| ||||| ||| Sbjct 400 TGTA--ATCAAATGTATCACAAAGAATGTGT-CGAGTCTCCACTTAAAATAAAACACCCT 456 Query 435 TAC 437 ||| Sbjct 457 TAC 459 > Ahg896203 jgi|Araly1|896203|Al_scaffold_0005_169 Length=486 Score = 62.1 bits (33), Expect = 1e-08 Identities = 33/33 (100%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 273 GTACTCCCTTTGTTTTGGTGCAACAATAAAGAA 305 ||||||||||||||||||||||||||||||||| Sbjct 355 GTACTCCCTTTGTTTTGGTGCAACAATAAAGAA 387 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71152577660 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5